Protein–RNA interactions for Protein: A0A0B4J275

TRAV17, T-cell receptor alpha variable 17 (Fragment), humanhuman

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV17A0A0B4J275 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
TRAV17A0A0B4J275 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC17.2■□□□□ 0.34
TRAV17A0A0B4J275 PRDX3-201ENST00000298510 1591 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
TRAV17A0A0B4J275 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
TRAV17A0A0B4J275 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC17.19■□□□□ 0.34
TRAV17A0A0B4J275 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
TRAV17A0A0B4J275 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
TRAV17A0A0B4J275 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
TRAV17A0A0B4J275 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
TRAV17A0A0B4J275 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC17.19■□□□□ 0.34
TRAV17A0A0B4J275 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC17.19■□□□□ 0.34
TRAV17A0A0B4J275 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC17.19■□□□□ 0.34
TRAV17A0A0B4J275 BIN1-207ENST00000357970 2497 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
TRAV17A0A0B4J275 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
TRAV17A0A0B4J275 FUOM-201ENST00000278025 709 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
TRAV17A0A0B4J275 NEURL2-201ENST00000372518 1278 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
TRAV17A0A0B4J275 AL645929.1-201ENST00000420084 975 ntBASIC17.19■□□□□ 0.34
TRAV17A0A0B4J275 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC17.19■□□□□ 0.34
TRAV17A0A0B4J275 AL162258.2-202ENST00000469931 831 ntTSL 5 BASIC17.19■□□□□ 0.34
TRAV17A0A0B4J275 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC17.19■□□□□ 0.34
TRAV17A0A0B4J275 REPIN1-217ENST00000518514 478 ntTSL 3 BASIC17.19■□□□□ 0.34
TRAV17A0A0B4J275 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC17.19■□□□□ 0.34
TRAV17A0A0B4J275 AP1S2-206ENST00000545766 576 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
TRAV17A0A0B4J275 ANKRD34C-AS1-203ENST00000559225 528 ntTSL 4 BASIC17.19■□□□□ 0.34
TRAV17A0A0B4J275 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
TRAV17A0A0B4J275 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
TRAV17A0A0B4J275 L3HYPDH-201ENST00000247194 1527 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
TRAV17A0A0B4J275 MACROD2-201ENST00000217246 4994 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.34
TRAV17A0A0B4J275 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
TRAV17A0A0B4J275 CPAMD8-202ENST00000388925 5355 ntTSL 5 BASIC17.19■□□□□ 0.34
TRAV17A0A0B4J275 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC17.19■□□□□ 0.34
TRAV17A0A0B4J275 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC17.19■□□□□ 0.34
TRAV17A0A0B4J275 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC17.19■□□□□ 0.34
TRAV17A0A0B4J275 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
TRAV17A0A0B4J275 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
TRAV17A0A0B4J275 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC17.18■□□□□ 0.34
TRAV17A0A0B4J275 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
TRAV17A0A0B4J275 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
TRAV17A0A0B4J275 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC17.18■□□□□ 0.34
TRAV17A0A0B4J275 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC17.18■□□□□ 0.34
TRAV17A0A0B4J275 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
TRAV17A0A0B4J275 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
TRAV17A0A0B4J275 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
TRAV17A0A0B4J275 CADPS2-208ENST00000615869 6066 ntAPPRIS ALT1 TSL 5 BASIC17.18■□□□□ 0.34
TRAV17A0A0B4J275 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC17.18■□□□□ 0.34
TRAV17A0A0B4J275 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
TRAV17A0A0B4J275 ZFAND2A-201ENST00000316495 860 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
TRAV17A0A0B4J275 IFT27-201ENST00000340630 1113 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
TRAV17A0A0B4J275 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
TRAV17A0A0B4J275 ZFAND2A-203ENST00000401903 968 ntTSL 3 BASIC17.18■□□□□ 0.34
TRAV17A0A0B4J275 AC093901.1-201ENST00000414886 778 ntTSL 5 BASIC17.18■□□□□ 0.34
TRAV17A0A0B4J275 AC106771.1-201ENST00000502209 372 ntTSL 2 BASIC17.18■□□□□ 0.34
TRAV17A0A0B4J275 AC010463.1-201ENST00000596542 1207 ntAPPRIS P1 TSL 2 BASIC17.18■□□□□ 0.34
TRAV17A0A0B4J275 PCSK6-215ENST00000611967 3336 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
TRAV17A0A0B4J275 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC17.18■□□□□ 0.34
TRAV17A0A0B4J275 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
TRAV17A0A0B4J275 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC17.18■□□□□ 0.34
TRAV17A0A0B4J275 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC17.18■□□□□ 0.34
TRAV17A0A0B4J275 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC17.18■□□□□ 0.34
TRAV17A0A0B4J275 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
TRAV17A0A0B4J275 DRD2-202ENST00000362072 2789 ntAPPRIS P2 TSL 1 (best) BASIC17.17■□□□□ 0.34
TRAV17A0A0B4J275 AGPAT2-205ENST00000538402 1357 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
TRAV17A0A0B4J275 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC17.17■□□□□ 0.34
TRAV17A0A0B4J275 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC17.17■□□□□ 0.34
TRAV17A0A0B4J275 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC17.17■□□□□ 0.34
TRAV17A0A0B4J275 ATP5G2P1-201ENST00000433580 426 ntBASIC17.17■□□□□ 0.34
TRAV17A0A0B4J275 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
TRAV17A0A0B4J275 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC17.17■□□□□ 0.34
TRAV17A0A0B4J275 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
TRAV17A0A0B4J275 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC17.17■□□□□ 0.34
TRAV17A0A0B4J275 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
TRAV17A0A0B4J275 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC17.17■□□□□ 0.34
TRAV17A0A0B4J275 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC17.17■□□□□ 0.34
TRAV17A0A0B4J275 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
TRAV17A0A0B4J275 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC17.17■□□□□ 0.34
TRAV17A0A0B4J275 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC17.17■□□□□ 0.34
TRAV17A0A0B4J275 PRKAG2-203ENST00000418337 2318 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
TRAV17A0A0B4J275 TH-202ENST00000333684 1535 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
TRAV17A0A0B4J275 Z82202.1-201ENST00000623446 1880 ntBASIC17.16■□□□□ 0.34
TRAV17A0A0B4J275 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC17.16■□□□□ 0.34
TRAV17A0A0B4J275 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
TRAV17A0A0B4J275 ARFRP1-214ENST00000622789 2559 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
TRAV17A0A0B4J275 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC17.16■□□□□ 0.34
TRAV17A0A0B4J275 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC17.16■□□□□ 0.34
TRAV17A0A0B4J275 PTPRE-201ENST00000254667 5331 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
TRAV17A0A0B4J275 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
TRAV17A0A0B4J275 TLCD1-201ENST00000292090 1017 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
TRAV17A0A0B4J275 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
TRAV17A0A0B4J275 AL603832.1-201ENST00000421943 449 ntTSL 5 BASIC17.16■□□□□ 0.34
TRAV17A0A0B4J275 DUSP5P1-201ENST00000441325 1139 ntBASIC17.16■□□□□ 0.34
TRAV17A0A0B4J275 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC17.16■□□□□ 0.34
TRAV17A0A0B4J275 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC17.16■□□□□ 0.34
TRAV17A0A0B4J275 NTF4-201ENST00000593537 932 ntAPPRIS P1 BASIC17.16■□□□□ 0.34
TRAV17A0A0B4J275 CLEC4GP1-201ENST00000596555 870 ntBASIC17.16■□□□□ 0.34
TRAV17A0A0B4J275 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC17.16■□□□□ 0.34
TRAV17A0A0B4J275 BCL10-202ENST00000620248 774 ntTSL 5 BASIC17.16■□□□□ 0.34
TRAV17A0A0B4J275 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
TRAV17A0A0B4J275 AC112497.1-201ENST00000624824 639 ntBASIC17.16■□□□□ 0.34
TRAV17A0A0B4J275 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC17.16■□□□□ 0.34
TRAV17A0A0B4J275 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 23.9 ms