Protein–RNA interactions for Protein: Q9Y5H0

PCDHGA3, Protocadherin gamma-A3, humanhuman

Predictions only

Length 932 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA3Q9Y5H0 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
PCDHGA3Q9Y5H0 SOCS3-201ENST00000330871 2734 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
PCDHGA3Q9Y5H0 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
PCDHGA3Q9Y5H0 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
PCDHGA3Q9Y5H0 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
PCDHGA3Q9Y5H0 PYCR1-204ENST00000403172 1811 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
PCDHGA3Q9Y5H0 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
PCDHGA3Q9Y5H0 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC18.49■□□□□ 0.55
PCDHGA3Q9Y5H0 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
PCDHGA3Q9Y5H0 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC18.49■□□□□ 0.55
PCDHGA3Q9Y5H0 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC18.48■□□□□ 0.55
PCDHGA3Q9Y5H0 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
PCDHGA3Q9Y5H0 PBXIP1-201ENST00000368460 1175 ntAPPRIS ALT2 TSL 3 BASIC18.48■□□□□ 0.55
PCDHGA3Q9Y5H0 AK4P3-201ENST00000418260 669 ntBASIC18.48■□□□□ 0.55
PCDHGA3Q9Y5H0 CDKN2AIPNL-202ENST00000458198 1223 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
PCDHGA3Q9Y5H0 AC063952.2-201ENST00000498792 1227 ntBASIC18.48■□□□□ 0.55
PCDHGA3Q9Y5H0 AC098864.1-204ENST00000513752 805 ntTSL 4 BASIC18.48■□□□□ 0.55
PCDHGA3Q9Y5H0 ABCD4-228ENST00000557588 763 ntTSL 3 BASIC18.48■□□□□ 0.55
PCDHGA3Q9Y5H0 GPX4-207ENST00000589115 812 ntTSL 2 BASIC18.48■□□□□ 0.55
PCDHGA3Q9Y5H0 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC18.48■□□□□ 0.55
PCDHGA3Q9Y5H0 TMEM114-203ENST00000620492 945 ntAPPRIS P1 TSL 2 BASIC18.48■□□□□ 0.55
PCDHGA3Q9Y5H0 AC010653.2-201ENST00000623505 997 ntBASIC18.48■□□□□ 0.55
PCDHGA3Q9Y5H0 TCF3P1-201ENST00000423021 1937 ntBASIC18.48■□□□□ 0.55
PCDHGA3Q9Y5H0 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
PCDHGA3Q9Y5H0 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
PCDHGA3Q9Y5H0 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC18.48■□□□□ 0.55
PCDHGA3Q9Y5H0 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC18.48■□□□□ 0.55
PCDHGA3Q9Y5H0 PCDHB14-202ENST00000624896 2367 ntTSL 2 BASIC18.48■□□□□ 0.55
PCDHGA3Q9Y5H0 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC18.48■□□□□ 0.55
PCDHGA3Q9Y5H0 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
PCDHGA3Q9Y5H0 FKBP3-202ENST00000396062 1346 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
PCDHGA3Q9Y5H0 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
PCDHGA3Q9Y5H0 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC18.47■□□□□ 0.55
PCDHGA3Q9Y5H0 TNXA-203ENST00000507684 2038 ntBASIC18.47■□□□□ 0.55
PCDHGA3Q9Y5H0 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
PCDHGA3Q9Y5H0 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC18.47■□□□□ 0.55
PCDHGA3Q9Y5H0 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC18.47■□□□□ 0.55
PCDHGA3Q9Y5H0 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
PCDHGA3Q9Y5H0 DNAJC4-201ENST00000321460 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
PCDHGA3Q9Y5H0 HIST1H2APS4-201ENST00000362070 348 ntBASIC18.47■□□□□ 0.55
PCDHGA3Q9Y5H0 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
PCDHGA3Q9Y5H0 NME1-207ENST00000480143 964 ntTSL 2 BASIC18.47■□□□□ 0.55
PCDHGA3Q9Y5H0 GLRB-205ENST00000512619 728 ntTSL 3 BASIC18.47■□□□□ 0.55
PCDHGA3Q9Y5H0 ABHD14B-208ENST00000525795 980 ntAPPRIS P1 TSL 3 BASIC18.47■□□□□ 0.55
PCDHGA3Q9Y5H0 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC18.47■□□□□ 0.55
PCDHGA3Q9Y5H0 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC18.47■□□□□ 0.55
PCDHGA3Q9Y5H0 AL138966.2-201ENST00000621997 464 ntBASIC18.47■□□□□ 0.55
PCDHGA3Q9Y5H0 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
PCDHGA3Q9Y5H0 ATRN-201ENST00000262919 8633 ntAPPRIS P4 TSL 5 BASIC18.47■□□□□ 0.55
PCDHGA3Q9Y5H0 RBM15B-201ENST00000563281 6641 ntAPPRIS P1 BASIC18.47■□□□□ 0.55
PCDHGA3Q9Y5H0 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC18.47■□□□□ 0.55
PCDHGA3Q9Y5H0 KRT8P8-201ENST00000434750 1448 ntBASIC18.47■□□□□ 0.55
PCDHGA3Q9Y5H0 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
PCDHGA3Q9Y5H0 ADGRD2-201ENST00000334810 3244 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
PCDHGA3Q9Y5H0 TYMS-201ENST00000323224 1327 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
PCDHGA3Q9Y5H0 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC18.47■□□□□ 0.55
PCDHGA3Q9Y5H0 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC18.46■□□□□ 0.55
PCDHGA3Q9Y5H0 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
PCDHGA3Q9Y5H0 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
PCDHGA3Q9Y5H0 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC18.46■□□□□ 0.55
PCDHGA3Q9Y5H0 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
PCDHGA3Q9Y5H0 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC18.46■□□□□ 0.55
PCDHGA3Q9Y5H0 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC18.46■□□□□ 0.55
PCDHGA3Q9Y5H0 COMMD1-201ENST00000311832 911 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
PCDHGA3Q9Y5H0 MRPL52-201ENST00000311892 1042 ntTSL 3 BASIC18.46■□□□□ 0.55
PCDHGA3Q9Y5H0 RASGRP2-205ENST00000377489 583 ntTSL 3 BASIC18.46■□□□□ 0.55
PCDHGA3Q9Y5H0 TSPY8-202ENST00000383000 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
PCDHGA3Q9Y5H0 TSPY2-202ENST00000383042 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
PCDHGA3Q9Y5H0 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC18.46■□□□□ 0.55
PCDHGA3Q9Y5H0 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC18.46■□□□□ 0.55
PCDHGA3Q9Y5H0 TSPY3-201ENST00000424594 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
PCDHGA3Q9Y5H0 TSPY10-202ENST00000444056 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
PCDHGA3Q9Y5H0 AC091390.4-202ENST00000476426 537 ntBASIC18.46■□□□□ 0.55
PCDHGA3Q9Y5H0 Z85996.1-201ENST00000494644 937 ntBASIC18.46■□□□□ 0.55
PCDHGA3Q9Y5H0 AC022616.7-201ENST00000525383 220 ntBASIC18.46■□□□□ 0.55
PCDHGA3Q9Y5H0 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC18.46■□□□□ 0.55
PCDHGA3Q9Y5H0 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
PCDHGA3Q9Y5H0 ZNF667-AS1-208ENST00000594783 475 ntTSL 3 BASIC18.46■□□□□ 0.55
PCDHGA3Q9Y5H0 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC18.46■□□□□ 0.55
PCDHGA3Q9Y5H0 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC18.46■□□□□ 0.55
PCDHGA3Q9Y5H0 BCAP29-202ENST00000379117 1946 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.55
PCDHGA3Q9Y5H0 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
PCDHGA3Q9Y5H0 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
PCDHGA3Q9Y5H0 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC18.46■□□□□ 0.55
PCDHGA3Q9Y5H0 AP000974.1-201ENST00000623909 2387 ntBASIC18.46■□□□□ 0.55
PCDHGA3Q9Y5H0 EIF5A-204ENST00000416016 1336 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
PCDHGA3Q9Y5H0 TMEM255B-202ENST00000375353 6100 ntAPPRIS P2 TSL 1 (best) BASIC18.46■□□□□ 0.55
PCDHGA3Q9Y5H0 PRKCI-201ENST00000295797 4950 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
PCDHGA3Q9Y5H0 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC18.45■□□□□ 0.54
PCDHGA3Q9Y5H0 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC18.45■□□□□ 0.54
PCDHGA3Q9Y5H0 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
PCDHGA3Q9Y5H0 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
PCDHGA3Q9Y5H0 PCDHAC2-201ENST00000289269 5963 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
PCDHGA3Q9Y5H0 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
PCDHGA3Q9Y5H0 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC18.45■□□□□ 0.54
PCDHGA3Q9Y5H0 TPPP3-202ENST00000393957 1058 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
PCDHGA3Q9Y5H0 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC18.45■□□□□ 0.54
PCDHGA3Q9Y5H0 AC007731.5-201ENST00000429594 644 ntAPPRIS P1 TSL 5 BASIC18.45■□□□□ 0.54
PCDHGA3Q9Y5H0 LINC01381-201ENST00000431650 466 ntTSL 3 BASIC18.45■□□□□ 0.54
PCDHGA3Q9Y5H0 REPIN1-210ENST00000482680 1029 ntTSL 2 BASIC18.45■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 21.9 ms