Protein–RNA interactions for Protein: Q9NY46

SCN3A, Sodium channel protein type 3 subunit alpha, humanhuman

Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3AQ9NY46 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC18.03■□□□□ 0.48
SCN3AQ9NY46 TPPP3-202ENST00000393957 1058 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
SCN3AQ9NY46 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
SCN3AQ9NY46 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC18.03■□□□□ 0.48
SCN3AQ9NY46 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC18.03■□□□□ 0.48
SCN3AQ9NY46 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC18.03■□□□□ 0.48
SCN3AQ9NY46 CRNDE-210ENST00000560912 459 ntTSL 5 BASIC18.03■□□□□ 0.48
SCN3AQ9NY46 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC18.03■□□□□ 0.48
SCN3AQ9NY46 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC18.03■□□□□ 0.48
SCN3AQ9NY46 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
SCN3AQ9NY46 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
SCN3AQ9NY46 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
SCN3AQ9NY46 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
SCN3AQ9NY46 C12orf42-205ENST00000548048 1532 ntAPPRIS ALT2 TSL 5 BASIC18.03■□□□□ 0.48
SCN3AQ9NY46 JAKMIP1-208ENST00000637373 1362 ntTSL 5 BASIC18.03■□□□□ 0.48
SCN3AQ9NY46 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC18.03■□□□□ 0.48
SCN3AQ9NY46 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC18.03■□□□□ 0.48
SCN3AQ9NY46 ITGBL1-202ENST00000376180 2494 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
SCN3AQ9NY46 CAMK4-210ENST00000512453 1640 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
SCN3AQ9NY46 MMP23A-201ENST00000234610 1017 ntBASIC18.03■□□□□ 0.48
SCN3AQ9NY46 IL17C-201ENST00000244241 1044 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
SCN3AQ9NY46 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
SCN3AQ9NY46 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
SCN3AQ9NY46 AC012306.2-201ENST00000609350 630 ntBASIC18.03■□□□□ 0.48
SCN3AQ9NY46 ABCC5-204ENST00000392579 1848 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
SCN3AQ9NY46 GRK6-201ENST00000355472 2939 ntAPPRIS P3 TSL 1 (best) BASIC18.03■□□□□ 0.48
SCN3AQ9NY46 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
SCN3AQ9NY46 BTBD1-202ENST00000379403 1467 ntTSL 5 BASIC18.03■□□□□ 0.48
SCN3AQ9NY46 DNAJC28-204ENST00000617313 2237 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
SCN3AQ9NY46 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC18.03■□□□□ 0.48
SCN3AQ9NY46 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC18.03■□□□□ 0.48
SCN3AQ9NY46 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
SCN3AQ9NY46 AC036111.1-201ENST00000533973 1582 ntBASIC18.02■□□□□ 0.48
SCN3AQ9NY46 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC18.02■□□□□ 0.48
SCN3AQ9NY46 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC18.02■□□□□ 0.48
SCN3AQ9NY46 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC18.02■□□□□ 0.48
SCN3AQ9NY46 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
SCN3AQ9NY46 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
SCN3AQ9NY46 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
SCN3AQ9NY46 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
SCN3AQ9NY46 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.48
SCN3AQ9NY46 GXYLT1P6-201ENST00000456472 1187 ntBASIC18.02■□□□□ 0.48
SCN3AQ9NY46 RN7SL850P-201ENST00000579959 291 ntBASIC18.02■□□□□ 0.48
SCN3AQ9NY46 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC18.02■□□□□ 0.48
SCN3AQ9NY46 ACAA1-209ENST00000450296 1570 ntTSL 5 BASIC18.02■□□□□ 0.47
SCN3AQ9NY46 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
SCN3AQ9NY46 LGALS9-202ENST00000313648 1378 ntTSL 3 BASIC18.02■□□□□ 0.47
SCN3AQ9NY46 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC18.02■□□□□ 0.47
SCN3AQ9NY46 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC18.02■□□□□ 0.47
SCN3AQ9NY46 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
SCN3AQ9NY46 ALG9-214ENST00000614444 2028 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
SCN3AQ9NY46 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC18.01■□□□□ 0.47
SCN3AQ9NY46 TSPY21P-201ENST00000433481 731 ntBASIC18.01■□□□□ 0.47
SCN3AQ9NY46 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
SCN3AQ9NY46 AC120498.9-201ENST00000339021 3867 ntBASIC18.01■□□□□ 0.47
SCN3AQ9NY46 ARID1A-201ENST00000324856 8577 ntAPPRIS P3 TSL 1 (best) BASIC18.01■□□□□ 0.47
SCN3AQ9NY46 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC18.01■□□□□ 0.47
SCN3AQ9NY46 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC18.01■□□□□ 0.47
SCN3AQ9NY46 LINC01568-207ENST00000641790 1380 ntBASIC18.01■□□□□ 0.47
SCN3AQ9NY46 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
SCN3AQ9NY46 IRX1P1-201ENST00000438849 1838 ntBASIC18.01■□□□□ 0.47
SCN3AQ9NY46 TH-202ENST00000333684 1535 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
SCN3AQ9NY46 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
SCN3AQ9NY46 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
SCN3AQ9NY46 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
SCN3AQ9NY46 KCTD10-211ENST00000540411 866 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
SCN3AQ9NY46 ARL16-209ENST00000573715 763 ntTSL 3 BASIC18.01■□□□□ 0.47
SCN3AQ9NY46 ARL16-211ENST00000576135 694 ntTSL 3 BASIC18.01■□□□□ 0.47
SCN3AQ9NY46 P4HB-223ENST00000576390 439 ntTSL 4 BASIC18.01■□□□□ 0.47
SCN3AQ9NY46 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC18.01■□□□□ 0.47
SCN3AQ9NY46 C17orf62-230ENST00000583617 866 ntTSL 5 BASIC18.01■□□□□ 0.47
SCN3AQ9NY46 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC18.01■□□□□ 0.47
SCN3AQ9NY46 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC18.01■□□□□ 0.47
SCN3AQ9NY46 SCFD2-204ENST00000611795 1320 ntTSL 5 BASIC18.01■□□□□ 0.47
SCN3AQ9NY46 TMEM74-201ENST00000297459 1741 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
SCN3AQ9NY46 IRF7-203ENST00000397566 2051 ntAPPRIS P4 TSL 1 (best) BASIC18.01■□□□□ 0.47
SCN3AQ9NY46 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC18.01■□□□□ 0.47
SCN3AQ9NY46 TTC34-201ENST00000401095 8814 ntAPPRIS ALT2 TSL 5 BASIC18.01■□□□□ 0.47
SCN3AQ9NY46 PTOV1-AS1-201ENST00000596521 2155 ntTSL 1 (best) BASIC18■□□□□ 0.47
SCN3AQ9NY46 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC18■□□□□ 0.47
SCN3AQ9NY46 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC18■□□□□ 0.47
SCN3AQ9NY46 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC18■□□□□ 0.47
SCN3AQ9NY46 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
SCN3AQ9NY46 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC18■□□□□ 0.47
SCN3AQ9NY46 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
SCN3AQ9NY46 ADAMTS10-205ENST00000595838 2458 ntTSL 2 BASIC18■□□□□ 0.47
SCN3AQ9NY46 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC18■□□□□ 0.47
SCN3AQ9NY46 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC18■□□□□ 0.47
SCN3AQ9NY46 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
SCN3AQ9NY46 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
SCN3AQ9NY46 ROPN1L-202ENST00000503804 1291 ntAPPRIS P1 TSL 2 BASIC18■□□□□ 0.47
SCN3AQ9NY46 CKBP1-201ENST00000565489 1086 ntBASIC18■□□□□ 0.47
SCN3AQ9NY46 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC18■□□□□ 0.47
SCN3AQ9NY46 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC18■□□□□ 0.47
SCN3AQ9NY46 TCP11-209ENST00000444780 1841 ntAPPRIS ALT2 TSL 2 BASIC18■□□□□ 0.47
SCN3AQ9NY46 METRN-204ENST00000568223 3325 ntAPPRIS P2 TSL 1 (best) BASIC18■□□□□ 0.47
SCN3AQ9NY46 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC18■□□□□ 0.47
SCN3AQ9NY46 SIGLEC14-201ENST00000360844 2035 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
SCN3AQ9NY46 SLC6A18-201ENST00000324642 2121 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
SCN3AQ9NY46 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC18■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 49.2 ms