Protein–RNA interactions for Protein: Q9H9J4

USP42, Ubiquitin carboxyl-terminal hydrolase 42, humanhuman

Known RBP Predictions only

Length 1,324 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP42Q9H9J4 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC24.2■■□□□ 1.46
USP42Q9H9J4 FAM57B-204ENST00000564806 1710 ntTSL 2 BASIC24.2■■□□□ 1.46
USP42Q9H9J4 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC24.2■■□□□ 1.46
USP42Q9H9J4 AC008060.1-201ENST00000401499 1551 ntTSL 1 (best) BASIC24.2■■□□□ 1.46
USP42Q9H9J4 NAA60-235ENST00000576916 1567 ntTSL 1 (best) BASIC24.2■■□□□ 1.46
USP42Q9H9J4 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC24.19■■□□□ 1.46
USP42Q9H9J4 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC24.19■■□□□ 1.46
USP42Q9H9J4 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
USP42Q9H9J4 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC24.19■■□□□ 1.46
USP42Q9H9J4 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
USP42Q9H9J4 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC24.19■■□□□ 1.46
USP42Q9H9J4 TCEAL2-201ENST00000329035 1080 ntAPPRIS P1 TSL 5 BASIC24.19■■□□□ 1.46
USP42Q9H9J4 TMEM234-202ENST00000344461 721 ntTSL 1 (best) BASIC24.19■■□□□ 1.46
USP42Q9H9J4 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC24.19■■□□□ 1.46
USP42Q9H9J4 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC24.19■■□□□ 1.46
USP42Q9H9J4 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC24.19■■□□□ 1.46
USP42Q9H9J4 KLK8-205ENST00000593490 267 ntTSL 3 BASIC24.19■■□□□ 1.46
USP42Q9H9J4 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC24.19■■□□□ 1.46
USP42Q9H9J4 AL732314.6-201ENST00000627721 484 ntTSL 4 BASIC24.19■■□□□ 1.46
USP42Q9H9J4 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
USP42Q9H9J4 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC24.19■■□□□ 1.46
USP42Q9H9J4 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC24.19■■□□□ 1.46
USP42Q9H9J4 BBC3-201ENST00000300880 1347 ntTSL 1 (best) BASIC24.19■■□□□ 1.46
USP42Q9H9J4 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC24.18■■□□□ 1.46
USP42Q9H9J4 UCHL5-202ENST00000367449 1507 ntAPPRIS ALT1 TSL 1 (best) BASIC24.18■■□□□ 1.46
USP42Q9H9J4 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC24.18■■□□□ 1.46
USP42Q9H9J4 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
USP42Q9H9J4 RASGRP2-208ENST00000394428 444 ntTSL 2 BASIC24.18■■□□□ 1.46
USP42Q9H9J4 ACP6-203ENST00000487562 1258 ntTSL 5 BASIC24.18■■□□□ 1.46
USP42Q9H9J4 RPL28-210ENST00000560583 1204 ntTSL 2 BASIC24.18■■□□□ 1.46
USP42Q9H9J4 IGFLR1-209ENST00000592537 1195 ntAPPRIS P2 TSL 1 (best) BASIC24.18■■□□□ 1.46
USP42Q9H9J4 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC24.18■■□□□ 1.46
USP42Q9H9J4 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC24.18■■□□□ 1.46
USP42Q9H9J4 ABO-203ENST00000611156 1577 ntAPPRIS ALT2 TSL 5 BASIC24.18■■□□□ 1.46
USP42Q9H9J4 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
USP42Q9H9J4 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
USP42Q9H9J4 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC24.18■■□□□ 1.46
USP42Q9H9J4 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC24.18■■□□□ 1.46
USP42Q9H9J4 SYTL1-201ENST00000318074 1900 ntTSL 2 BASIC24.17■■□□□ 1.46
USP42Q9H9J4 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC24.17■■□□□ 1.46
USP42Q9H9J4 ADAD1-202ENST00000388724 1912 ntTSL 1 (best) BASIC24.17■■□□□ 1.46
USP42Q9H9J4 PVRIG2P-201ENST00000435460 978 ntBASIC24.17■■□□□ 1.46
USP42Q9H9J4 DMKN-212ENST00000443640 842 ntAPPRIS ALT2 TSL 5 BASIC24.17■■□□□ 1.46
USP42Q9H9J4 TSSC2-201ENST00000450217 709 ntBASIC24.17■■□□□ 1.46
USP42Q9H9J4 MTG1-205ENST00000477902 1283 ntTSL 3 BASIC24.17■■□□□ 1.46
USP42Q9H9J4 SELENOH-204ENST00000534355 818 ntAPPRIS P2 TSL 1 (best) BASIC24.17■■□□□ 1.46
USP42Q9H9J4 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
USP42Q9H9J4 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC24.17■■□□□ 1.46
USP42Q9H9J4 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC24.17■■□□□ 1.46
USP42Q9H9J4 P2RY6-210ENST00000542092 1674 ntAPPRIS P1 TSL 2 BASIC24.17■■□□□ 1.46
USP42Q9H9J4 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC24.17■■□□□ 1.46
USP42Q9H9J4 PFKFB3-217ENST00000626882 1965 ntTSL 5 BASIC24.17■■□□□ 1.46
USP42Q9H9J4 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
USP42Q9H9J4 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC24.17■■□□□ 1.46
USP42Q9H9J4 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC24.17■■□□□ 1.46
USP42Q9H9J4 CYP2D7-203ENST00000433992 1740 ntTSL 1 (best) BASIC24.17■■□□□ 1.46
USP42Q9H9J4 CYP2D7-207ENST00000612115 1734 ntAPPRIS P1 TSL 5 BASIC24.17■■□□□ 1.46
USP42Q9H9J4 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC24.17■■□□□ 1.46
USP42Q9H9J4 PLAUR-203ENST00000340093 1548 ntAPPRIS P3 TSL 1 (best) BASIC24.17■■□□□ 1.46
USP42Q9H9J4 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
USP42Q9H9J4 GMPPA-213ENST00000622191 1473 ntTSL 5 BASIC24.16■■□□□ 1.46
USP42Q9H9J4 AFG3L1P-217ENST00000557444 2447 ntBASIC24.16■■□□□ 1.46
USP42Q9H9J4 GTPBP8-208ENST00000619116 1378 ntTSL 5 BASIC24.16■■□□□ 1.46
USP42Q9H9J4 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
USP42Q9H9J4 ELK1-202ENST00000343894 736 ntAPPRIS ALT2 TSL 1 (best) BASIC24.16■■□□□ 1.46
USP42Q9H9J4 DBNDD2-202ENST00000360981 1078 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
USP42Q9H9J4 ATP5J-203ENST00000400090 647 ntAPPRIS P1 TSL 2 BASIC24.16■■□□□ 1.46
USP42Q9H9J4 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC24.16■■□□□ 1.46
USP42Q9H9J4 ZNF346-205ENST00000506693 1276 ntTSL 2 BASIC24.16■■□□□ 1.46
USP42Q9H9J4 AP000721.2-201ENST00000537170 650 ntTSL 4 BASIC24.16■■□□□ 1.46
USP42Q9H9J4 AC111152.3-201ENST00000569699 673 ntBASIC24.16■■□□□ 1.46
USP42Q9H9J4 AC004771.4-201ENST00000576752 474 ntTSL 5 BASIC24.16■■□□□ 1.46
USP42Q9H9J4 ZSCAN1-203ENST00000601162 813 ntTSL 1 (best) BASIC24.16■■□□□ 1.46
USP42Q9H9J4 HOXB8-201ENST00000239144 1823 ntAPPRIS P2 TSL 2 BASIC24.16■■□□□ 1.46
USP42Q9H9J4 SLC25A24-204ENST00000569674 2357 ntBASIC24.16■■□□□ 1.46
USP42Q9H9J4 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC24.16■■□□□ 1.46
USP42Q9H9J4 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC24.16■■□□□ 1.46
USP42Q9H9J4 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC24.16■■□□□ 1.46
USP42Q9H9J4 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC24.16■■□□□ 1.46
USP42Q9H9J4 PRR16-201ENST00000379551 1826 ntTSL 1 (best) BASIC24.15■■□□□ 1.46
USP42Q9H9J4 AC016734.2-201ENST00000624325 1377 ntBASIC24.15■■□□□ 1.46
USP42Q9H9J4 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
USP42Q9H9J4 AP002383.4-201ENST00000442518 975 ntBASIC24.15■■□□□ 1.46
USP42Q9H9J4 AC034232.1-201ENST00000506026 1064 ntBASIC24.15■■□□□ 1.46
USP42Q9H9J4 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC24.15■■□□□ 1.46
USP42Q9H9J4 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC24.15■■□□□ 1.46
USP42Q9H9J4 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC24.15■■□□□ 1.46
USP42Q9H9J4 AC011498.5-201ENST00000592027 486 ntBASIC24.15■■□□□ 1.46
USP42Q9H9J4 KCNE1B-204ENST00000623803 811 ntAPPRIS P2 TSL 1 (best) BASIC24.15■■□□□ 1.46
USP42Q9H9J4 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC24.15■■□□□ 1.46
USP42Q9H9J4 SLC38A11-203ENST00000409149 1621 ntAPPRIS P2 TSL 2 BASIC24.15■■□□□ 1.46
USP42Q9H9J4 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
USP42Q9H9J4 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC24.15■■□□□ 1.46
USP42Q9H9J4 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC24.15■■□□□ 1.46
USP42Q9H9J4 FKBP8-206ENST00000596558 1756 ntAPPRIS ALT1 TSL 2 BASIC24.15■■□□□ 1.46
USP42Q9H9J4 TREX1-205ENST00000625293 1783 ntBASIC24.15■■□□□ 1.46
USP42Q9H9J4 PRDX3-201ENST00000298510 1591 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
USP42Q9H9J4 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC24.15■■□□□ 1.46
USP42Q9H9J4 CHID1-203ENST00000436108 1477 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
USP42Q9H9J4 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
Retrieved 100 of 98,524 protein–RNA pairs in 46.4 ms