Protein–RNA interactions for Protein: Q9H6T3

RPAP3, RNA polymerase II-associated protein 3, humanhuman

Predicted RBP Predictions only

Length 665 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPAP3Q9H6T3 KCNMB3-202ENST00000349697 1228 ntAPPRIS P1 TSL 5 BASIC21.92■■□□□ 1.1
RPAP3Q9H6T3 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC21.92■■□□□ 1.1
RPAP3Q9H6T3 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
RPAP3Q9H6T3 MCCD1P1-208ENST00000445732 328 ntBASIC21.92■■□□□ 1.1
RPAP3Q9H6T3 AC034232.1-201ENST00000506026 1064 ntBASIC21.92■■□□□ 1.1
RPAP3Q9H6T3 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC21.92■■□□□ 1.1
RPAP3Q9H6T3 AL133352.1-203ENST00000557395 1234 ntAPPRIS P5 TSL 2 BASIC21.92■■□□□ 1.1
RPAP3Q9H6T3 NDUFV2-AS1-203ENST00000608008 779 ntBASIC21.92■■□□□ 1.1
RPAP3Q9H6T3 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC21.92■■□□□ 1.1
RPAP3Q9H6T3 DNAJB6-218ENST00000634080 1005 ntTSL 2 BASIC21.92■■□□□ 1.1
RPAP3Q9H6T3 SPACA6-213ENST00000637797 1073 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
RPAP3Q9H6T3 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC21.92■■□□□ 1.1
RPAP3Q9H6T3 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC21.92■■□□□ 1.1
RPAP3Q9H6T3 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC21.92■■□□□ 1.1
RPAP3Q9H6T3 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC21.92■■□□□ 1.1
RPAP3Q9H6T3 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC21.92■■□□□ 1.1
RPAP3Q9H6T3 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
RPAP3Q9H6T3 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
RPAP3Q9H6T3 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC21.91■■□□□ 1.1
RPAP3Q9H6T3 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
RPAP3Q9H6T3 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
RPAP3Q9H6T3 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC21.91■■□□□ 1.1
RPAP3Q9H6T3 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC21.91■■□□□ 1.1
RPAP3Q9H6T3 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
RPAP3Q9H6T3 C20orf196-201ENST00000303142 1154 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
RPAP3Q9H6T3 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
RPAP3Q9H6T3 IFT27-201ENST00000340630 1113 ntAPPRIS P3 TSL 1 (best) BASIC21.91■■□□□ 1.1
RPAP3Q9H6T3 LINC00421-201ENST00000413833 1054 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
RPAP3Q9H6T3 AP000347.1-209ENST00000437294 557 ntTSL 4 BASIC21.91■■□□□ 1.1
RPAP3Q9H6T3 CNP-204ENST00000472031 1019 ntTSL 2 BASIC21.91■■□□□ 1.1
RPAP3Q9H6T3 MIR3180-5-201ENST00000583743 153 ntBASIC21.91■■□□□ 1.1
RPAP3Q9H6T3 RABAC1-210ENST00000601891 628 ntTSL 3 BASIC21.91■■□□□ 1.1
RPAP3Q9H6T3 AC096719.1-201ENST00000510705 1874 ntTSL 5 BASIC21.91■■□□□ 1.1
RPAP3Q9H6T3 PHLDB3-201ENST00000292140 2591 ntAPPRIS P1 TSL 5 BASIC21.91■■□□□ 1.1
RPAP3Q9H6T3 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC21.9■■□□□ 1.1
RPAP3Q9H6T3 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC21.9■■□□□ 1.1
RPAP3Q9H6T3 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC21.9■■□□□ 1.1
RPAP3Q9H6T3 KRT8P3-201ENST00000519669 1449 ntBASIC21.9■■□□□ 1.1
RPAP3Q9H6T3 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
RPAP3Q9H6T3 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
RPAP3Q9H6T3 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC21.9■■□□□ 1.1
RPAP3Q9H6T3 CSNK2A2-201ENST00000262506 1701 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
RPAP3Q9H6T3 PTPRK-218ENST00000525459 1722 ntTSL 2 BASIC21.9■■□□□ 1.1
RPAP3Q9H6T3 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
RPAP3Q9H6T3 ISCU-201ENST00000311893 994 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
RPAP3Q9H6T3 SWI5-201ENST00000320188 980 ntAPPRIS P3 TSL 1 (best) BASIC21.9■■□□□ 1.1
RPAP3Q9H6T3 OTOP2-201ENST00000331427 2147 ntAPPRIS P1 TSL 5 BASIC21.9■■□□□ 1.1
RPAP3Q9H6T3 TNFRSF10C-202ENST00000397703 1242 ntTSL 2 BASIC21.9■■□□□ 1.1
RPAP3Q9H6T3 RAP1B-228ENST00000542145 1060 ntTSL 2 BASIC21.9■■□□□ 1.1
RPAP3Q9H6T3 CLEC4GP1-201ENST00000596555 870 ntBASIC21.9■■□□□ 1.1
RPAP3Q9H6T3 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
RPAP3Q9H6T3 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
RPAP3Q9H6T3 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC21.9■■□□□ 1.1
RPAP3Q9H6T3 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC21.9■■□□□ 1.1
RPAP3Q9H6T3 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC21.9■■□□□ 1.1
RPAP3Q9H6T3 TP73-202ENST00000354437 2140 ntTSL 5 BASIC21.89■■□□□ 1.1
RPAP3Q9H6T3 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC21.89■■□□□ 1.1
RPAP3Q9H6T3 ZACN-201ENST00000334586 1335 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.1
RPAP3Q9H6T3 FUOM-201ENST00000278025 709 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
RPAP3Q9H6T3 TLCD1-201ENST00000292090 1017 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
RPAP3Q9H6T3 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC21.89■■□□□ 1.09
RPAP3Q9H6T3 NDUFAB1-201ENST00000007516 717 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
RPAP3Q9H6T3 Z82202.1-201ENST00000623446 1880 ntBASIC21.89■■□□□ 1.09
RPAP3Q9H6T3 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC21.89■■□□□ 1.09
RPAP3Q9H6T3 L3HYPDH-201ENST00000247194 1527 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
RPAP3Q9H6T3 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC21.89■■□□□ 1.09
RPAP3Q9H6T3 TCP11-209ENST00000444780 1841 ntAPPRIS ALT2 TSL 2 BASIC21.89■■□□□ 1.09
RPAP3Q9H6T3 DNAJC8-201ENST00000263697 1759 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
RPAP3Q9H6T3 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC21.89■■□□□ 1.09
RPAP3Q9H6T3 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC21.89■■□□□ 1.09
RPAP3Q9H6T3 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
RPAP3Q9H6T3 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
RPAP3Q9H6T3 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
RPAP3Q9H6T3 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC21.88■■□□□ 1.09
RPAP3Q9H6T3 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC21.88■■□□□ 1.09
RPAP3Q9H6T3 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
RPAP3Q9H6T3 CLDN5-201ENST00000403084 2357 ntBASIC21.88■■□□□ 1.09
RPAP3Q9H6T3 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC21.88■■□□□ 1.09
RPAP3Q9H6T3 ZFAND2A-201ENST00000316495 860 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
RPAP3Q9H6T3 ZFAND2A-203ENST00000401903 968 ntTSL 3 BASIC21.88■■□□□ 1.09
RPAP3Q9H6T3 AL645929.1-201ENST00000420084 975 ntBASIC21.88■■□□□ 1.09
RPAP3Q9H6T3 AP003396.1-201ENST00000501918 507 ntTSL 5 BASIC21.88■■□□□ 1.09
RPAP3Q9H6T3 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC21.88■■□□□ 1.09
RPAP3Q9H6T3 AC064807.1-201ENST00000518942 816 ntTSL 3 BASIC21.88■■□□□ 1.09
RPAP3Q9H6T3 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC21.88■■□□□ 1.09
RPAP3Q9H6T3 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC21.88■■□□□ 1.09
RPAP3Q9H6T3 NTF4-201ENST00000593537 932 ntAPPRIS P1 BASIC21.88■■□□□ 1.09
RPAP3Q9H6T3 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
RPAP3Q9H6T3 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC21.88■■□□□ 1.09
RPAP3Q9H6T3 TREX1-205ENST00000625293 1783 ntBASIC21.88■■□□□ 1.09
RPAP3Q9H6T3 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC21.88■■□□□ 1.09
RPAP3Q9H6T3 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC21.88■■□□□ 1.09
RPAP3Q9H6T3 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
RPAP3Q9H6T3 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
RPAP3Q9H6T3 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC21.88■■□□□ 1.09
RPAP3Q9H6T3 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC21.88■■□□□ 1.09
RPAP3Q9H6T3 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC21.87■■□□□ 1.09
RPAP3Q9H6T3 SNRPN-207ENST00000554227 1763 ntTSL 5 BASIC21.87■■□□□ 1.09
RPAP3Q9H6T3 GJA8-201ENST00000369235 1302 ntAPPRIS P1 BASIC21.87■■□□□ 1.09
RPAP3Q9H6T3 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
Retrieved 100 of 98,524 protein–RNA pairs in 29.6 ms