Protein–RNA interactions for Protein: Q9BYV6

TRIM55, Tripartite motif-containing protein 55, humanhuman

Predictions only

Length 548 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM55Q9BYV6 CNIH4-203ENST00000366858 702 ntTSL 3 BASIC19.2■□□□□ 0.66
TRIM55Q9BYV6 ZDHHC20-204ENST00000415724 1296 ntAPPRIS ALT2 TSL 5 BASIC19.2■□□□□ 0.66
TRIM55Q9BYV6 ZPBP-203ENST00000419417 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
TRIM55Q9BYV6 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC19.2■□□□□ 0.66
TRIM55Q9BYV6 AC226101.2-201ENST00000458252 747 ntTSL 2 BASIC19.2■□□□□ 0.66
TRIM55Q9BYV6 AC091564.5-201ENST00000526456 820 ntTSL 4 BASIC19.2■□□□□ 0.66
TRIM55Q9BYV6 PNMA6B-201ENST00000538162 1200 ntBASIC19.2■□□□□ 0.66
TRIM55Q9BYV6 ANP32AP1-202ENST00000560832 1074 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
TRIM55Q9BYV6 RRN3-205ENST00000563559 2128 ntTSL 5 BASIC19.2■□□□□ 0.66
TRIM55Q9BYV6 CLN6-206ENST00000565471 1075 ntTSL 2 BASIC19.2■□□□□ 0.66
TRIM55Q9BYV6 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC19.2■□□□□ 0.66
TRIM55Q9BYV6 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC19.2■□□□□ 0.66
TRIM55Q9BYV6 RPS15-206ENST00000589656 473 ntAPPRIS ALT1 TSL 5 BASIC19.2■□□□□ 0.66
TRIM55Q9BYV6 MAPK14-210ENST00000622903 1003 ntTSL 5 BASIC19.2■□□□□ 0.66
TRIM55Q9BYV6 DNAH17-AS1-202ENST00000591373 1453 ntTSL 5 BASIC19.2■□□□□ 0.66
TRIM55Q9BYV6 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
TRIM55Q9BYV6 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
TRIM55Q9BYV6 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
TRIM55Q9BYV6 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC19.19■□□□□ 0.66
TRIM55Q9BYV6 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
TRIM55Q9BYV6 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
TRIM55Q9BYV6 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC19.19■□□□□ 0.66
TRIM55Q9BYV6 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC19.19■□□□□ 0.66
TRIM55Q9BYV6 AL031598.1-201ENST00000561511 1773 ntBASIC19.19■□□□□ 0.66
TRIM55Q9BYV6 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC19.19■□□□□ 0.66
TRIM55Q9BYV6 BCL2-203ENST00000589955 5011 ntBASIC19.19■□□□□ 0.66
TRIM55Q9BYV6 ISLR2-210ENST00000565540 2780 ntAPPRIS P1 TSL 4 BASIC19.19■□□□□ 0.66
TRIM55Q9BYV6 CARD9-202ENST00000371734 1814 ntTSL 5 BASIC19.19■□□□□ 0.66
TRIM55Q9BYV6 ETHE1-201ENST00000292147 963 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
TRIM55Q9BYV6 CEACAM3-201ENST00000344550 1022 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
TRIM55Q9BYV6 BOLA1-203ENST00000369153 1096 ntAPPRIS P1 TSL 3 BASIC19.19■□□□□ 0.66
TRIM55Q9BYV6 UBE2SP1-201ENST00000450587 669 ntBASIC19.19■□□□□ 0.66
TRIM55Q9BYV6 DLEU7-203ENST00000504404 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
TRIM55Q9BYV6 CERNA3-201ENST00000521403 557 ntTSL 3 BASIC19.19■□□□□ 0.66
TRIM55Q9BYV6 AC007493.2-201ENST00000568427 478 ntTSL 3 BASIC19.19■□□□□ 0.66
TRIM55Q9BYV6 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC19.19■□□□□ 0.66
TRIM55Q9BYV6 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC19.19■□□□□ 0.66
TRIM55Q9BYV6 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
TRIM55Q9BYV6 RBM7-201ENST00000375490 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC19.19■□□□□ 0.66
TRIM55Q9BYV6 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC19.19■□□□□ 0.66
TRIM55Q9BYV6 ARL5A-201ENST00000295087 5326 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
TRIM55Q9BYV6 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
TRIM55Q9BYV6 ZBTB4-201ENST00000311403 5956 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
TRIM55Q9BYV6 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
TRIM55Q9BYV6 AHCYL2-201ENST00000325006 5056 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
TRIM55Q9BYV6 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC19.19■□□□□ 0.66
TRIM55Q9BYV6 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC19.19■□□□□ 0.66
TRIM55Q9BYV6 EEPD1-201ENST00000242108 4765 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
TRIM55Q9BYV6 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC19.18■□□□□ 0.66
TRIM55Q9BYV6 ENOPH1-201ENST00000273920 2025 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
TRIM55Q9BYV6 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC19.18■□□□□ 0.66
TRIM55Q9BYV6 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
TRIM55Q9BYV6 CHST11-205ENST00000549260 5696 ntAPPRIS ALT1 TSL 1 (best) BASIC19.18■□□□□ 0.66
TRIM55Q9BYV6 TEX21P-204ENST00000641479 1693 ntBASIC19.18■□□□□ 0.66
TRIM55Q9BYV6 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
TRIM55Q9BYV6 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC19.18■□□□□ 0.66
TRIM55Q9BYV6 UBN1-201ENST00000262376 6252 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
TRIM55Q9BYV6 MCIDAS-201ENST00000513312 1736 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
TRIM55Q9BYV6 MCAT-202ENST00000327555 1134 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
TRIM55Q9BYV6 AK2-201ENST00000354858 1021 ntAPPRIS P4 TSL 1 (best) BASIC19.18■□□□□ 0.66
TRIM55Q9BYV6 KRT18P68-201ENST00000392293 1000 ntBASIC19.18■□□□□ 0.66
TRIM55Q9BYV6 FLYWCH2-202ENST00000396958 1036 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
TRIM55Q9BYV6 GPR35-203ENST00000407714 1258 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
TRIM55Q9BYV6 TNIK-208ENST00000465393 750 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
TRIM55Q9BYV6 JPT2-204ENST00000561516 1065 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
TRIM55Q9BYV6 AC005225.2-202ENST00000617980 408 ntTSL 4 BASIC19.18■□□□□ 0.66
TRIM55Q9BYV6 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
TRIM55Q9BYV6 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC19.18■□□□□ 0.66
TRIM55Q9BYV6 SOWAHC-201ENST00000356454 4657 ntAPPRIS P1 BASIC19.18■□□□□ 0.66
TRIM55Q9BYV6 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
TRIM55Q9BYV6 AC092368.3-202ENST00000574180 1591 ntBASIC19.18■□□□□ 0.66
TRIM55Q9BYV6 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
TRIM55Q9BYV6 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
TRIM55Q9BYV6 AL133373.2-201ENST00000623187 2828 ntBASIC19.18■□□□□ 0.66
TRIM55Q9BYV6 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC19.18■□□□□ 0.66
TRIM55Q9BYV6 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC19.18■□□□□ 0.66
TRIM55Q9BYV6 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
TRIM55Q9BYV6 DCHS2-201ENST00000339452 5064 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
TRIM55Q9BYV6 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
TRIM55Q9BYV6 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
TRIM55Q9BYV6 SPRED3-201ENST00000338502 4778 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
TRIM55Q9BYV6 Z98044.1-201ENST00000632503 1764 ntBASIC19.17■□□□□ 0.66
TRIM55Q9BYV6 PQLC2-203ENST00000400548 1548 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
TRIM55Q9BYV6 PCDHB18P-201ENST00000524813 2368 ntBASIC19.17■□□□□ 0.66
TRIM55Q9BYV6 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
TRIM55Q9BYV6 RHOC-203ENST00000369632 1026 ntAPPRIS P1 TSL 3 BASIC19.17■□□□□ 0.66
TRIM55Q9BYV6 HLA-G-202ENST00000376815 851 ntBASIC19.17■□□□□ 0.66
TRIM55Q9BYV6 HLA-G-203ENST00000376818 1127 ntBASIC19.17■□□□□ 0.66
TRIM55Q9BYV6 AVP-201ENST00000380293 619 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
TRIM55Q9BYV6 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
TRIM55Q9BYV6 ELF3-AS1-202ENST00000419190 788 ntTSL 2 BASIC19.17■□□□□ 0.66
TRIM55Q9BYV6 RPPH1-201ENST00000516869 333 ntBASIC19.17■□□□□ 0.66
TRIM55Q9BYV6 NDUFS3-212ENST00000534208 583 ntTSL 4 BASIC19.17■□□□□ 0.66
TRIM55Q9BYV6 AC113189.1-201ENST00000570444 327 ntTSL 3 BASIC19.17■□□□□ 0.66
TRIM55Q9BYV6 AC004771.5-201ENST00000575985 542 ntTSL 4 BASIC19.17■□□□□ 0.66
TRIM55Q9BYV6 AC233263.1-201ENST00000578059 224 ntBASIC19.17■□□□□ 0.66
TRIM55Q9BYV6 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
TRIM55Q9BYV6 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
TRIM55Q9BYV6 WNT5B-201ENST00000310594 2184 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
TRIM55Q9BYV6 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 38.4 ms