Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 CMIP-201ENST00000398040 2825 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
LINC00643Q86TS7 DMTN-223ENST00000523782 2235 ntAPPRIS P1 TSL 5 BASIC11.92□□□□□ -0.5
LINC00643Q86TS7 MOB3A-201ENST00000357066 3391 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
LINC00643Q86TS7 ELFN2-201ENST00000402918 8361 ntAPPRIS P1 TSL 4 BASIC11.92□□□□□ -0.5
LINC00643Q86TS7 APAF1-203ENST00000359972 7029 ntAPPRIS ALT1 TSL 1 (best) BASIC11.92□□□□□ -0.5
LINC00643Q86TS7 ZYG11A-202ENST00000371532 3942 ntTSL 5 BASIC11.92□□□□□ -0.5
LINC00643Q86TS7 SYBU-230ENST00000532779 2765 ntAPPRIS ALT2 TSL 2 BASIC11.92□□□□□ -0.5
LINC00643Q86TS7 ARHGAP22-206ENST00000435790 2595 ntAPPRIS ALT2 TSL 2 BASIC11.92□□□□□ -0.5
LINC00643Q86TS7 SLC52A1-201ENST00000254853 2377 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
LINC00643Q86TS7 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC11.92□□□□□ -0.5
LINC00643Q86TS7 MINPP1-201ENST00000371994 2183 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
LINC00643Q86TS7 CACNA1G-201ENST00000352832 7848 ntAPPRIS ALT2 TSL 1 (best) BASIC11.92□□□□□ -0.5
LINC00643Q86TS7 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
LINC00643Q86TS7 CCT6A-201ENST00000275603 2719 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
LINC00643Q86TS7 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC11.92□□□□□ -0.5
LINC00643Q86TS7 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC11.92□□□□□ -0.5
LINC00643Q86TS7 ZAR1L-202ENST00000533490 1564 ntAPPRIS P1 TSL 5 BASIC11.92□□□□□ -0.5
LINC00643Q86TS7 BMI1-201ENST00000376663 3428 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
LINC00643Q86TS7 WWTR1-201ENST00000360632 2103 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
LINC00643Q86TS7 SLC29A1-206ENST00000371755 2112 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
LINC00643Q86TS7 UGP2-202ENST00000394417 2136 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
LINC00643Q86TS7 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
LINC00643Q86TS7 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC11.92□□□□□ -0.5
LINC00643Q86TS7 PAX6-203ENST00000379109 3182 ntAPPRIS ALT1 TSL 2 BASIC11.91□□□□□ -0.5
LINC00643Q86TS7 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
LINC00643Q86TS7 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
LINC00643Q86TS7 TMCO6-203ENST00000394671 1887 ntAPPRIS P1 TSL 2 BASIC11.91□□□□□ -0.5
LINC00643Q86TS7 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC11.91□□□□□ -0.5
LINC00643Q86TS7 NUDT16P1-202ENST00000499077 2208 ntTSL 2 BASIC11.91□□□□□ -0.5
LINC00643Q86TS7 LINC02551-202ENST00000533812 2203 ntTSL 5 BASIC11.91□□□□□ -0.5
LINC00643Q86TS7 PLXNB3-201ENST00000361971 6146 ntAPPRIS P3 TSL 1 (best) BASIC11.91□□□□□ -0.5
LINC00643Q86TS7 PRRX2-201ENST00000372469 1311 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
LINC00643Q86TS7 DDX42-208ENST00000578681 4337 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
LINC00643Q86TS7 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC11.91□□□□□ -0.5
LINC00643Q86TS7 BICD2-202ENST00000375512 4636 ntAPPRIS P3 TSL 1 (best) BASIC11.91□□□□□ -0.5
LINC00643Q86TS7 CD34-202ENST00000356522 2874 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
LINC00643Q86TS7 ZNF707-223ENST00000532205 2865 ntAPPRIS P1 TSL 2 BASIC11.91□□□□□ -0.5
LINC00643Q86TS7 DOC2GP-204ENST00000639052 2548 ntBASIC11.91□□□□□ -0.5
LINC00643Q86TS7 CASK-203ENST00000378163 4411 ntAPPRIS ALT1 TSL 5 BASIC11.91□□□□□ -0.5
LINC00643Q86TS7 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC11.91□□□□□ -0.5
LINC00643Q86TS7 CAPN15-201ENST00000219611 4744 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
LINC00643Q86TS7 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
LINC00643Q86TS7 TMUB2-204ENST00000538716 1953 ntAPPRIS ALT1 TSL 2 BASIC11.91□□□□□ -0.5
LINC00643Q86TS7 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC11.91□□□□□ -0.5
LINC00643Q86TS7 NTHL1-201ENST00000219066 1067 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
LINC00643Q86TS7 RIPPLY2-202ENST00000369689 664 ntAPPRIS P2 TSL 1 (best) BASIC11.91□□□□□ -0.5
LINC00643Q86TS7 CARD9-201ENST00000371732 2123 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
LINC00643Q86TS7 FAM185A-202ENST00000413034 1179 ntAPPRIS P4 TSL 5 BASIC11.91□□□□□ -0.5
LINC00643Q86TS7 AC136428.2-201ENST00000563187 214 ntBASIC11.91□□□□□ -0.5
LINC00643Q86TS7 Z97653.1-201ENST00000567096 446 ntTSL 3 BASIC11.91□□□□□ -0.5
LINC00643Q86TS7 AC044849.2-201ENST00000606596 710 ntBASIC11.91□□□□□ -0.5
LINC00643Q86TS7 GAK-223ENST00000628912 497 ntTSL 5 BASIC11.91□□□□□ -0.5
LINC00643Q86TS7 P3H4-202ENST00000393928 2601 ntAPPRIS P2 TSL 1 (best) BASIC11.91□□□□□ -0.5
LINC00643Q86TS7 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
LINC00643Q86TS7 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC11.91□□□□□ -0.5
LINC00643Q86TS7 EIF3L-202ENST00000406934 2282 ntTSL 2 BASIC11.91□□□□□ -0.5
LINC00643Q86TS7 SRCIN1-215ENST00000621492 4644 ntAPPRIS ALT2 TSL 5 BASIC11.91□□□□□ -0.5
LINC00643Q86TS7 ALOX15-205ENST00000574640 2422 ntTSL 2 BASIC11.91□□□□□ -0.5
LINC00643Q86TS7 C2CD4A-201ENST00000355522 3445 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
LINC00643Q86TS7 ROBO3-201ENST00000397801 4569 ntAPPRIS P2 TSL 1 (best) BASIC11.91□□□□□ -0.5
LINC00643Q86TS7 ROBO3-220ENST00000538940 4551 ntAPPRIS ALT2 TSL 5 BASIC11.91□□□□□ -0.5
LINC00643Q86TS7 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
LINC00643Q86TS7 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC11.91□□□□□ -0.5
LINC00643Q86TS7 FAM208A-201ENST00000355628 5239 ntAPPRIS ALT2 TSL 1 (best) BASIC11.91□□□□□ -0.5
LINC00643Q86TS7 LRRFIP1-201ENST00000244815 4370 ntAPPRIS P3 TSL 1 (best) BASIC11.91□□□□□ -0.5
LINC00643Q86TS7 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC11.91□□□□□ -0.5
LINC00643Q86TS7 ARHGAP39-201ENST00000276826 4697 ntAPPRIS ALT2 TSL 2 BASIC11.91□□□□□ -0.5
LINC00643Q86TS7 MYB-242ENST00000618728 3545 ntTSL 5 BASIC11.91□□□□□ -0.5
LINC00643Q86TS7 CCDC155-201ENST00000447857 2378 ntAPPRIS P2 TSL 1 (best) BASIC11.91□□□□□ -0.5
LINC00643Q86TS7 ZNF451-203ENST00000370706 5268 ntAPPRIS ALT2 TSL 1 (best) BASIC11.91□□□□□ -0.5
LINC00643Q86TS7 ZNF503-201ENST00000372524 3347 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
LINC00643Q86TS7 MAGEA2-208ENST00000623438 2009 ntAPPRIS P1 TSL 2 BASIC11.91□□□□□ -0.5
LINC00643Q86TS7 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC11.91□□□□□ -0.5
LINC00643Q86TS7 MTERF3-204ENST00000523821 1529 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
LINC00643Q86TS7 C2CD4C-201ENST00000332235 3129 ntAPPRIS P1 TSL 2 BASIC11.91□□□□□ -0.5
LINC00643Q86TS7 SAP130-202ENST00000259235 4065 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
LINC00643Q86TS7 LRP11-201ENST00000239367 3260 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
LINC00643Q86TS7 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC11.91□□□□□ -0.5
LINC00643Q86TS7 ZNF302-202ENST00000446502 2635 ntAPPRIS ALT2 TSL 2 BASIC11.9□□□□□ -0.5
LINC00643Q86TS7 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
LINC00643Q86TS7 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
LINC00643Q86TS7 WASHC2C-204ENST00000374362 4623 ntAPPRIS P3 TSL 1 (best) BASIC11.9□□□□□ -0.5
LINC00643Q86TS7 MOGS-205ENST00000452063 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC11.9□□□□□ -0.5
LINC00643Q86TS7 AL121758.1-201ENST00000488788 2714 ntAPPRIS P1 TSL 2 BASIC11.9□□□□□ -0.5
LINC00643Q86TS7 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
LINC00643Q86TS7 PMAIP1-202ENST00000316660 1948 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
LINC00643Q86TS7 FGFR3-208ENST00000481110 4217 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
LINC00643Q86TS7 TCF25-202ENST00000263347 2377 ntTSL 5 BASIC11.9□□□□□ -0.5
LINC00643Q86TS7 SARDH-205ENST00000422262 2367 ntTSL 5 BASIC11.9□□□□□ -0.5
LINC00643Q86TS7 PCDHB19P-201ENST00000570871 2371 ntBASIC11.9□□□□□ -0.5
LINC00643Q86TS7 SUPT20H-203ENST00000360252 2843 ntAPPRIS P3 TSL 1 (best) BASIC11.9□□□□□ -0.5
LINC00643Q86TS7 ASH2L-212ENST00000545394 2808 ntTSL 2 BASIC11.9□□□□□ -0.5
LINC00643Q86TS7 ARHGEF5-201ENST00000056217 5544 ntAPPRIS P2 TSL 1 (best) BASIC11.9□□□□□ -0.5
LINC00643Q86TS7 LRRC59-201ENST00000225972 2910 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
LINC00643Q86TS7 HDAC5-201ENST00000225983 5326 ntAPPRIS P3 TSL 5 BASIC11.9□□□□□ -0.5
LINC00643Q86TS7 DNM2-201ENST00000355667 3541 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
LINC00643Q86TS7 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
LINC00643Q86TS7 YPEL5-205ENST00000402708 1735 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
LINC00643Q86TS7 CAAP1-205ENST00000520187 773 ntTSL 5 BASIC11.9□□□□□ -0.5
LINC00643Q86TS7 C16orf52-207ENST00000569656 1257 ntTSL 5 BASIC11.9□□□□□ -0.5
Retrieved 100 of 98,524 protein–RNA pairs in 52.7 ms