Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 RTBDN-203ENST00000458671 1066 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
CCDC40Q4G0X9 AC108693.2-201ENST00000492981 303 ntTSL 3 BASIC20.95■□□□□ 0.94
CCDC40Q4G0X9 AC124016.1-201ENST00000609552 612 ntBASIC20.95■□□□□ 0.94
CCDC40Q4G0X9 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC20.95■□□□□ 0.94
CCDC40Q4G0X9 TRIM73-202ENST00000430211 1321 ntAPPRIS ALT2 TSL 2 BASIC20.95■□□□□ 0.94
CCDC40Q4G0X9 AVPR1A-201ENST00000299178 5963 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
CCDC40Q4G0X9 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC20.95■□□□□ 0.94
CCDC40Q4G0X9 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC20.95■□□□□ 0.94
CCDC40Q4G0X9 DPYSL3-202ENST00000398514 5309 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
CCDC40Q4G0X9 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC20.94■□□□□ 0.94
CCDC40Q4G0X9 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
CCDC40Q4G0X9 IL6R-208ENST00000622330 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
CCDC40Q4G0X9 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
CCDC40Q4G0X9 SENP6-202ENST00000370010 4644 ntAPPRIS P3 TSL 1 (best) BASIC20.94■□□□□ 0.94
CCDC40Q4G0X9 ATXN7L2-202ENST00000369870 2318 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
CCDC40Q4G0X9 AC073107.1-201ENST00000633579 1962 ntTSL 5 BASIC20.94■□□□□ 0.94
CCDC40Q4G0X9 RNF144A-201ENST00000320892 5743 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
CCDC40Q4G0X9 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
CCDC40Q4G0X9 CEP78-201ENST00000277082 2542 ntAPPRIS ALT2 TSL 2 BASIC20.94■□□□□ 0.94
CCDC40Q4G0X9 PUSL1-201ENST00000379031 1287 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
CCDC40Q4G0X9 KCNMA1-220ENST00000481070 896 ntTSL 2 BASIC20.94■□□□□ 0.94
CCDC40Q4G0X9 AL162258.1-201ENST00000497086 753 ntTSL 2 BASIC20.94■□□□□ 0.94
CCDC40Q4G0X9 ZNF346-203ENST00000503425 1191 ntTSL 2 BASIC20.94■□□□□ 0.94
CCDC40Q4G0X9 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC20.94■□□□□ 0.94
CCDC40Q4G0X9 RN7SL471P-201ENST00000580476 299 ntBASIC20.94■□□□□ 0.94
CCDC40Q4G0X9 ADD3-AS1-204ENST00000627565 388 ntTSL 3 BASIC20.94■□□□□ 0.94
CCDC40Q4G0X9 MTFP1-206ENST00000629597 482 ntTSL 5 BASIC20.94■□□□□ 0.94
CCDC40Q4G0X9 FBXO41-205ENST00000521871 7336 ntAPPRIS P1 TSL 5 BASIC20.94■□□□□ 0.94
CCDC40Q4G0X9 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC20.94■□□□□ 0.94
CCDC40Q4G0X9 FEM1AP3-201ENST00000403722 1741 ntBASIC20.94■□□□□ 0.94
CCDC40Q4G0X9 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
CCDC40Q4G0X9 ARL5A-201ENST00000295087 5326 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
CCDC40Q4G0X9 GPS2-201ENST00000380728 1379 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
CCDC40Q4G0X9 CROCCP3-202ENST00000420820 1947 ntBASIC20.94■□□□□ 0.94
CCDC40Q4G0X9 NOMO2-201ENST00000330537 4352 ntAPPRIS ALT2 TSL 5 BASIC20.94■□□□□ 0.94
CCDC40Q4G0X9 DCAKD-208ENST00000614054 2054 ntAPPRIS P1 TSL 2 BASIC20.93■□□□□ 0.94
CCDC40Q4G0X9 FAM189B-204ENST00000368368 2609 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
CCDC40Q4G0X9 MAP3K6-207ENST00000493901 4309 ntAPPRIS P1 TSL 5 BASIC20.93■□□□□ 0.94
CCDC40Q4G0X9 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC20.93■□□□□ 0.94
CCDC40Q4G0X9 NOMO1-201ENST00000287667 4355 ntAPPRIS P2 TSL 1 (best) BASIC20.93■□□□□ 0.94
CCDC40Q4G0X9 AATK-203ENST00000417379 5081 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
CCDC40Q4G0X9 SCRIB-201ENST00000320476 5143 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
CCDC40Q4G0X9 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC20.93■□□□□ 0.94
CCDC40Q4G0X9 KCTD20-210ENST00000536244 5345 ntTSL 2 BASIC20.93■□□□□ 0.94
CCDC40Q4G0X9 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC20.93■□□□□ 0.94
CCDC40Q4G0X9 SERF1A-201ENST00000317633 963 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
CCDC40Q4G0X9 NMRK1-201ENST00000361092 1185 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
CCDC40Q4G0X9 TMEM35B-201ENST00000373337 922 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
CCDC40Q4G0X9 ICAM2-207ENST00000579687 1154 ntAPPRIS P1 TSL 3 BASIC20.93■□□□□ 0.94
CCDC40Q4G0X9 MIR4651-201ENST00000582622 73 ntBASIC20.93■□□□□ 0.94
CCDC40Q4G0X9 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC20.93■□□□□ 0.94
CCDC40Q4G0X9 AC110285.5-201ENST00000611501 352 ntBASIC20.93■□□□□ 0.94
CCDC40Q4G0X9 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
CCDC40Q4G0X9 USP32-201ENST00000300896 5171 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
CCDC40Q4G0X9 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
CCDC40Q4G0X9 KLHL23-201ENST00000272797 2087 ntAPPRIS P1 TSL 2 BASIC20.93■□□□□ 0.94
CCDC40Q4G0X9 MEF2B-204ENST00000424583 1405 ntAPPRIS P1 TSL 5 BASIC20.93■□□□□ 0.94
CCDC40Q4G0X9 TPCN2-201ENST00000294309 2931 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
CCDC40Q4G0X9 C19orf66-209ENST00000591813 1481 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
CCDC40Q4G0X9 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
CCDC40Q4G0X9 RAB11FIP2-201ENST00000355624 6061 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
CCDC40Q4G0X9 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
CCDC40Q4G0X9 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
CCDC40Q4G0X9 SLC12A5-210ENST00000616202 2445 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
CCDC40Q4G0X9 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
CCDC40Q4G0X9 ZNF623-203ENST00000526926 2612 ntAPPRIS ALT2 TSL 2 BASIC20.92■□□□□ 0.94
CCDC40Q4G0X9 GRB10-208ENST00000403097 5432 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
CCDC40Q4G0X9 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
CCDC40Q4G0X9 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
CCDC40Q4G0X9 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC20.92■□□□□ 0.94
CCDC40Q4G0X9 AC011944.1-201ENST00000316148 1900 ntTSL 2 BASIC20.92■□□□□ 0.94
CCDC40Q4G0X9 ALG9-214ENST00000614444 2028 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
CCDC40Q4G0X9 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC20.92■□□□□ 0.94
CCDC40Q4G0X9 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC20.92■□□□□ 0.94
CCDC40Q4G0X9 TLE4-205ENST00000376544 4871 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
CCDC40Q4G0X9 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC20.92■□□□□ 0.94
CCDC40Q4G0X9 CMTM7-202ENST00000349718 1214 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
CCDC40Q4G0X9 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
CCDC40Q4G0X9 ISG20-202ENST00000379224 540 ntTSL 3 BASIC20.92■□□□□ 0.94
CCDC40Q4G0X9 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC20.92■□□□□ 0.94
CCDC40Q4G0X9 TSPY21P-201ENST00000433481 731 ntBASIC20.92■□□□□ 0.94
CCDC40Q4G0X9 Z98884.1-201ENST00000451646 830 ntTSL 3 BASIC20.92■□□□□ 0.94
CCDC40Q4G0X9 AC091564.2-201ENST00000527191 399 ntTSL 3 BASIC20.92■□□□□ 0.94
CCDC40Q4G0X9 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC20.92■□□□□ 0.94
CCDC40Q4G0X9 FBXO17-202ENST00000595329 1299 ntAPPRIS P1 TSL 2 BASIC20.92■□□□□ 0.94
CCDC40Q4G0X9 CD24-208ENST00000622315 825 ntAPPRIS ALT2 TSL 2 BASIC20.92■□□□□ 0.94
CCDC40Q4G0X9 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
CCDC40Q4G0X9 ARID1A-201ENST00000324856 8577 ntAPPRIS P3 TSL 1 (best) BASIC20.92■□□□□ 0.94
CCDC40Q4G0X9 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC20.92■□□□□ 0.94
CCDC40Q4G0X9 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC20.92■□□□□ 0.94
CCDC40Q4G0X9 CABP7-201ENST00000216144 3259 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
CCDC40Q4G0X9 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC20.92■□□□□ 0.94
CCDC40Q4G0X9 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
CCDC40Q4G0X9 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
CCDC40Q4G0X9 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
CCDC40Q4G0X9 FBXL20-202ENST00000394294 2309 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
CCDC40Q4G0X9 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
CCDC40Q4G0X9 AZIN1-201ENST00000337198 4721 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
CCDC40Q4G0X9 EFR3A-201ENST00000254624 5438 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
CCDC40Q4G0X9 TMEM131-201ENST00000186436 6640 ntAPPRIS P1 TSL 5 BASIC20.91■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 65.3 ms