Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
PKNOX1P55347 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC18.67■□□□□ 0.58
PKNOX1P55347 TACO1-201ENST00000258975 1469 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
PKNOX1P55347 TMEM53-205ENST00000372244 1472 ntTSL 2 BASIC18.67■□□□□ 0.58
PKNOX1P55347 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
PKNOX1P55347 AC008667.2-201ENST00000504413 469 ntTSL 3 BASIC18.67■□□□□ 0.58
PKNOX1P55347 AC068987.1-201ENST00000562996 427 ntTSL 3 BASIC18.67■□□□□ 0.58
PKNOX1P55347 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC18.67■□□□□ 0.58
PKNOX1P55347 CES1P1-204ENST00000574030 877 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
PKNOX1P55347 AL109923.1-201ENST00000618799 583 ntBASIC18.67■□□□□ 0.58
PKNOX1P55347 IL10RB-201ENST00000290200 1963 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
PKNOX1P55347 ADARB1-201ENST00000348831 6882 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
PKNOX1P55347 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
PKNOX1P55347 GORASP1-220ENST00000479927 1345 ntTSL 2 BASIC18.67■□□□□ 0.58
PKNOX1P55347 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC18.67■□□□□ 0.58
PKNOX1P55347 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC18.67■□□□□ 0.58
PKNOX1P55347 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
PKNOX1P55347 NDUFV3-202ENST00000354250 1575 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
PKNOX1P55347 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
PKNOX1P55347 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
PKNOX1P55347 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
PKNOX1P55347 BMP8B-201ENST00000372827 4822 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
PKNOX1P55347 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
PKNOX1P55347 LGALS9C-212ENST00000583322 1602 ntAPPRIS ALT1 TSL 5 BASIC18.67■□□□□ 0.58
PKNOX1P55347 TRPM2-202ENST00000300482 5989 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
PKNOX1P55347 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
PKNOX1P55347 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
PKNOX1P55347 AC135050.7-201ENST00000624508 2218 ntBASIC18.66■□□□□ 0.58
PKNOX1P55347 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
PKNOX1P55347 LTB4R2-202ENST00000528054 3092 ntBASIC18.66■□□□□ 0.58
PKNOX1P55347 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC18.66■□□□□ 0.58
PKNOX1P55347 PTPA-201ENST00000337738 2845 ntTSL 2 BASIC18.66■□□□□ 0.58
PKNOX1P55347 GALNT2-201ENST00000366672 4454 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
PKNOX1P55347 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
PKNOX1P55347 NAA35-201ENST00000361671 2649 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
PKNOX1P55347 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
PKNOX1P55347 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
PKNOX1P55347 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
PKNOX1P55347 CFC1-201ENST00000259216 1046 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
PKNOX1P55347 CFC1B-201ENST00000281882 1071 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
PKNOX1P55347 ZNF580-201ENST00000325333 1261 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
PKNOX1P55347 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
PKNOX1P55347 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC18.66■□□□□ 0.58
PKNOX1P55347 AC026427.1-201ENST00000508993 555 ntTSL 3 BASIC18.66■□□□□ 0.58
PKNOX1P55347 C17orf107-202ENST00000521575 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
PKNOX1P55347 UNC93B6-201ENST00000525262 1143 ntTSL 5 BASIC18.66■□□□□ 0.58
PKNOX1P55347 AC069185.1-201ENST00000531395 811 ntTSL 3 BASIC18.66■□□□□ 0.58
PKNOX1P55347 RHOD-202ENST00000532559 538 ntTSL 3 BASIC18.66■□□□□ 0.58
PKNOX1P55347 TXNL4A-203ENST00000585474 1185 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
PKNOX1P55347 SMAGP-206ENST00000604188 433 ntTSL 3 BASIC18.66■□□□□ 0.58
PKNOX1P55347 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC18.66■□□□□ 0.58
PKNOX1P55347 GCDH-216ENST00000591470 1867 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
PKNOX1P55347 CCDC27-201ENST00000294600 2176 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
PKNOX1P55347 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC18.66■□□□□ 0.58
PKNOX1P55347 ZNF768-202ENST00000562803 1999 ntAPPRIS ALT2 TSL 3 BASIC18.66■□□□□ 0.58
PKNOX1P55347 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
PKNOX1P55347 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC18.66■□□□□ 0.58
PKNOX1P55347 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC18.66■□□□□ 0.58
PKNOX1P55347 IRX1P1-201ENST00000438849 1838 ntBASIC18.65■□□□□ 0.58
PKNOX1P55347 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC18.65■□□□□ 0.58
PKNOX1P55347 KANSL1L-203ENST00000418791 3562 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
PKNOX1P55347 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
PKNOX1P55347 DAG1-221ENST00000541308 5676 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
PKNOX1P55347 USP39-202ENST00000409025 1946 ntTSL 5 BASIC18.65■□□□□ 0.58
PKNOX1P55347 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC18.65■□□□□ 0.58
PKNOX1P55347 CDHR1-201ENST00000332904 2694 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
PKNOX1P55347 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC18.65■□□□□ 0.58
PKNOX1P55347 ADORA2A-213ENST00000610595 2736 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
PKNOX1P55347 FKBP2-202ENST00000394540 1002 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
PKNOX1P55347 TTTY14-205ENST00000454875 544 ntTSL 2 BASIC18.65■□□□□ 0.58
PKNOX1P55347 AC142086.2-201ENST00000569753 217 ntBASIC18.65■□□□□ 0.58
PKNOX1P55347 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC18.65■□□□□ 0.58
PKNOX1P55347 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC18.65■□□□□ 0.58
PKNOX1P55347 INO80E-214ENST00000620599 515 ntTSL 2 BASIC18.65■□□□□ 0.58
PKNOX1P55347 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC18.65■□□□□ 0.58
PKNOX1P55347 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
PKNOX1P55347 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
PKNOX1P55347 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
PKNOX1P55347 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC18.65■□□□□ 0.58
PKNOX1P55347 KATNAL2-208ENST00000592005 1348 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
PKNOX1P55347 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
PKNOX1P55347 NFS1-214ENST00000541387 1436 ntTSL 2 BASIC18.65■□□□□ 0.58
PKNOX1P55347 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
PKNOX1P55347 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC18.65■□□□□ 0.58
PKNOX1P55347 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
PKNOX1P55347 ACYP2-203ENST00000406041 1913 ntTSL 1 (best) BASIC18.64■□□□□ 0.58
PKNOX1P55347 AC008878.3-201ENST00000617428 4964 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
PKNOX1P55347 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC18.64■□□□□ 0.58
PKNOX1P55347 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC18.64■□□□□ 0.58
PKNOX1P55347 AC073107.1-201ENST00000633579 1962 ntTSL 5 BASIC18.64■□□□□ 0.58
PKNOX1P55347 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.58
PKNOX1P55347 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC18.64■□□□□ 0.58
PKNOX1P55347 SGSM2-201ENST00000268989 4863 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
PKNOX1P55347 CD7-206ENST00000583376 1659 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
PKNOX1P55347 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
PKNOX1P55347 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.57
PKNOX1P55347 B3GALNT1-202ENST00000392779 3221 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
PKNOX1P55347 FBLN1-201ENST00000262722 2251 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
PKNOX1P55347 C10orf76-201ENST00000311122 724 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
PKNOX1P55347 EGFL7-202ENST00000371698 1282 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 21.2 ms