Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
LIG3P49916 DET1-205ENST00000558413 583 ntTSL 4 BASIC19.95■□□□□ 0.78
LIG3P49916 AC007493.2-201ENST00000568427 478 ntTSL 3 BASIC19.95■□□□□ 0.78
LIG3P49916 ICAM2-207ENST00000579687 1154 ntAPPRIS P1 TSL 3 BASIC19.95■□□□□ 0.78
LIG3P49916 DCAKD-205ENST00000588499 990 ntAPPRIS P1 TSL 2 BASIC19.95■□□□□ 0.78
LIG3P49916 FAM197Y4-202ENST00000622692 608 ntBASIC19.95■□□□□ 0.78
LIG3P49916 CCNI2-201ENST00000378731 2355 ntAPPRIS P3 TSL 1 (best) BASIC19.95■□□□□ 0.78
LIG3P49916 SCRN2-201ENST00000290216 1548 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
LIG3P49916 TREX1-205ENST00000625293 1783 ntBASIC19.95■□□□□ 0.78
LIG3P49916 COQ10B-201ENST00000263960 2239 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
LIG3P49916 RTEL1-204ENST00000370003 2273 ntTSL 2 BASIC19.95■□□□□ 0.78
LIG3P49916 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
LIG3P49916 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC19.95■□□□□ 0.78
LIG3P49916 NOMO3-201ENST00000263012 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC19.95■□□□□ 0.78
LIG3P49916 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC19.94■□□□□ 0.78
LIG3P49916 GOLGA6L2-204ENST00000567107 3030 ntAPPRIS P2 TSL 5 BASIC19.94■□□□□ 0.78
LIG3P49916 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC19.94■□□□□ 0.78
LIG3P49916 AP005717.1-201ENST00000500705 1899 ntTSL 5 BASIC19.94■□□□□ 0.78
LIG3P49916 RNF144A-201ENST00000320892 5743 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
LIG3P49916 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC19.94■□□□□ 0.78
LIG3P49916 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
LIG3P49916 BCL7A-203ENST00000538010 6247 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
LIG3P49916 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
LIG3P49916 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
LIG3P49916 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
LIG3P49916 GALNT2-201ENST00000366672 4454 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
LIG3P49916 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC19.94■□□□□ 0.78
LIG3P49916 MCAT-202ENST00000327555 1134 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
LIG3P49916 BCL2L10-202ENST00000561198 825 ntAPPRIS ALT2 TSL 1 (best) BASIC19.94■□□□□ 0.78
LIG3P49916 BX649632.1-201ENST00000610187 819 ntTSL 3 BASIC19.94■□□□□ 0.78
LIG3P49916 SLC35A2-213ENST00000635015 1008 ntTSL 2 BASIC19.94■□□□□ 0.78
LIG3P49916 AL023875.1-201ENST00000640777 796 ntBASIC19.94■□□□□ 0.78
LIG3P49916 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC19.94■□□□□ 0.78
LIG3P49916 UBE2Q2-201ENST00000267938 3130 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
LIG3P49916 IRS2-201ENST00000375856 8138 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
LIG3P49916 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
LIG3P49916 ATXN7-210ENST00000487717 3683 ntAPPRIS P3 TSL 5 BASIC19.94■□□□□ 0.78
LIG3P49916 SLC25A46-201ENST00000355943 2385 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
LIG3P49916 TRIM73-202ENST00000430211 1321 ntAPPRIS ALT2 TSL 2 BASIC19.94■□□□□ 0.78
LIG3P49916 KCTD20-210ENST00000536244 5345 ntTSL 2 BASIC19.94■□□□□ 0.78
LIG3P49916 DCLK2-207ENST00000635524 2153 ntAPPRIS ALT2 TSL 5 BASIC19.94■□□□□ 0.78
LIG3P49916 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC19.94■□□□□ 0.78
LIG3P49916 AC007383.3-201ENST00000453039 1411 ntTSL 3 BASIC19.93■□□□□ 0.78
LIG3P49916 ADGRA3-202ENST00000334304 4566 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
LIG3P49916 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC19.93■□□□□ 0.78
LIG3P49916 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
LIG3P49916 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC19.93■□□□□ 0.78
LIG3P49916 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC19.93■□□□□ 0.78
LIG3P49916 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC19.93■□□□□ 0.78
LIG3P49916 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
LIG3P49916 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
LIG3P49916 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
LIG3P49916 RABEP2-202ENST00000358201 2821 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
LIG3P49916 NTSR2-201ENST00000306928 1569 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
LIG3P49916 MRPL15-201ENST00000260102 1147 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
LIG3P49916 PRSS57-201ENST00000329267 1025 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
LIG3P49916 CLTA-202ENST00000345519 1073 ntAPPRIS ALT1 TSL 1 (best) BASIC19.93■□□□□ 0.78
LIG3P49916 CMTM7-202ENST00000349718 1214 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
LIG3P49916 TTTY14-205ENST00000454875 544 ntTSL 2 BASIC19.93■□□□□ 0.78
LIG3P49916 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC19.93■□□□□ 0.78
LIG3P49916 AC091564.5-201ENST00000526456 820 ntTSL 4 BASIC19.93■□□□□ 0.78
LIG3P49916 PRSS57-202ENST00000613411 1090 ntAPPRIS P3 TSL 1 (best) BASIC19.93■□□□□ 0.78
LIG3P49916 KIAA1522-204ENST00000401073 5438 ntAPPRIS P3 TSL 2 BASIC19.93■□□□□ 0.78
LIG3P49916 MRPL4-202ENST00000307422 1320 ntAPPRIS P2 TSL 5 BASIC19.93■□□□□ 0.78
LIG3P49916 CARNS1-202ENST00000445895 3971 ntAPPRIS P1 TSL 5 BASIC19.93■□□□□ 0.78
LIG3P49916 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC19.93■□□□□ 0.78
LIG3P49916 KANSL1-202ENST00000432791 5343 ntAPPRIS P3 TSL 1 (best) BASIC19.93■□□□□ 0.78
LIG3P49916 GIT1-203ENST00000394869 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
LIG3P49916 MXRA8-209ENST00000477278 2728 ntTSL 5 BASIC19.93■□□□□ 0.78
LIG3P49916 PDE1C-206ENST00000396193 5109 ntAPPRIS P4 TSL 2 BASIC19.93■□□□□ 0.78
LIG3P49916 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC19.93■□□□□ 0.78
LIG3P49916 ADAMTS17-201ENST00000268070 6207 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
LIG3P49916 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC19.93■□□□□ 0.78
LIG3P49916 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
LIG3P49916 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
LIG3P49916 DGKI-203ENST00000446122 4070 ntAPPRIS ALT2 TSL 5 BASIC19.92■□□□□ 0.78
LIG3P49916 SDK1-202ENST00000404826 10397 ntAPPRIS P2 TSL 1 (best) BASIC19.92■□□□□ 0.78
LIG3P49916 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC19.92■□□□□ 0.78
LIG3P49916 BMP8B-201ENST00000372827 4822 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
LIG3P49916 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
LIG3P49916 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
LIG3P49916 AC099398.1-201ENST00000567919 2776 ntBASIC19.92■□□□□ 0.78
LIG3P49916 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC19.92■□□□□ 0.78
LIG3P49916 MTFP1-202ENST00000355143 891 ntTSL 2 BASIC19.92■□□□□ 0.78
LIG3P49916 ISG20-202ENST00000379224 540 ntTSL 3 BASIC19.92■□□□□ 0.78
LIG3P49916 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
LIG3P49916 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC19.92■□□□□ 0.78
LIG3P49916 LY6E-205ENST00000519611 635 ntTSL 3 BASIC19.92■□□□□ 0.78
LIG3P49916 LY6E-212ENST00000522024 868 ntAPPRIS P2 TSL 5 BASIC19.92■□□□□ 0.78
LIG3P49916 AC080023.1-201ENST00000526906 803 ntTSL 2 BASIC19.92■□□□□ 0.78
LIG3P49916 AC004771.5-201ENST00000575985 542 ntTSL 4 BASIC19.92■□□□□ 0.78
LIG3P49916 AC010531.6-201ENST00000602282 401 ntTSL 2 BASIC19.92■□□□□ 0.78
LIG3P49916 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
LIG3P49916 AL121829.2-201ENST00000620908 328 ntBASIC19.92■□□□□ 0.78
LIG3P49916 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
LIG3P49916 SCOC-208ENST00000510586 2193 ntAPPRIS ALT1 TSL 5 BASIC19.92■□□□□ 0.78
LIG3P49916 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC19.92■□□□□ 0.78
LIG3P49916 SYT7-209ENST00000542836 1362 ntTSL 5 BASIC19.92■□□□□ 0.78
LIG3P49916 ZBTB45-201ENST00000354590 2352 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
LIG3P49916 SLCO6A1-201ENST00000379807 2437 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 29.4 ms