Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 MARC2-202ENST00000366913 2134 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
BDNFP23560 RBM26-207ENST00000622611 5230 ntTSL 2 BASIC20.08■□□□□ 0.8
BDNFP23560 P3H4-202ENST00000393928 2601 ntAPPRIS P2 TSL 1 (best) BASIC20.07■□□□□ 0.8
BDNFP23560 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC20.07■□□□□ 0.8
BDNFP23560 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
BDNFP23560 CAB39-203ENST00000410084 1324 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
BDNFP23560 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
BDNFP23560 SLC25A51-202ENST00000377716 1691 ntAPPRIS P1 TSL 3 BASIC20.07■□□□□ 0.8
BDNFP23560 C21orf58-205ENST00000397683 1674 ntAPPRIS ALT2 TSL 2 BASIC20.07■□□□□ 0.8
BDNFP23560 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC20.07■□□□□ 0.8
BDNFP23560 ADGRL1-202ENST00000361434 5610 ntAPPRIS P3 TSL 1 (best) BASIC20.07■□□□□ 0.8
BDNFP23560 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC20.07■□□□□ 0.8
BDNFP23560 RARRES2-205ENST00000482669 563 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
BDNFP23560 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
BDNFP23560 AL513523.10-201ENST00000623024 1186 ntAPPRIS P1 TSL 5 BASIC20.07■□□□□ 0.8
BDNFP23560 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC20.07■□□□□ 0.8
BDNFP23560 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
BDNFP23560 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC20.07■□□□□ 0.8
BDNFP23560 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
BDNFP23560 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC20.07■□□□□ 0.8
BDNFP23560 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC20.07■□□□□ 0.8
BDNFP23560 FO681492.1-203ENST00000622861 1362 ntAPPRIS ALT2 TSL 5 BASIC20.07■□□□□ 0.8
BDNFP23560 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
BDNFP23560 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC20.06■□□□□ 0.8
BDNFP23560 TYMS-201ENST00000323224 1327 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
BDNFP23560 DHRS4-201ENST00000313250 1443 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
BDNFP23560 BOLA3-202ENST00000327428 639 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
BDNFP23560 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC20.06■□□□□ 0.8
BDNFP23560 AC099329.3-201ENST00000431549 602 ntAPPRIS P1 TSL 4 BASIC20.06■□□□□ 0.8
BDNFP23560 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC20.06■□□□□ 0.8
BDNFP23560 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC20.06■□□□□ 0.8
BDNFP23560 TYROBP-209ENST00000589517 415 ntAPPRIS ALT1 TSL 1 (best) BASIC20.06■□□□□ 0.8
BDNFP23560 ACD-203ENST00000602320 1408 ntAPPRIS ALT2 TSL 5 BASIC20.06■□□□□ 0.8
BDNFP23560 AC008622.2-201ENST00000617006 1229 ntBASIC20.06■□□□□ 0.8
BDNFP23560 AL138966.2-201ENST00000621997 464 ntBASIC20.06■□□□□ 0.8
BDNFP23560 AL032819.2-201ENST00000624543 2162 ntBASIC20.06■□□□□ 0.8
BDNFP23560 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC20.06■□□□□ 0.8
BDNFP23560 MYEOV-202ENST00000441339 1996 ntAPPRIS P3 TSL 2 BASIC20.06■□□□□ 0.8
BDNFP23560 NES-201ENST00000368223 5558 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
BDNFP23560 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC20.06■□□□□ 0.8
BDNFP23560 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
BDNFP23560 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
BDNFP23560 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC20.05■□□□□ 0.8
BDNFP23560 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC20.05■□□□□ 0.8
BDNFP23560 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
BDNFP23560 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC20.05■□□□□ 0.8
BDNFP23560 CYP2F1-201ENST00000331105 1720 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
BDNFP23560 MAML1-201ENST00000292599 5723 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
BDNFP23560 LMNB1-202ENST00000395354 1572 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
BDNFP23560 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC20.05■□□□□ 0.8
BDNFP23560 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC20.05■□□□□ 0.8
BDNFP23560 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
BDNFP23560 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC20.05■□□□□ 0.8
BDNFP23560 PTCRA-201ENST00000304672 1080 ntAPPRIS P3 TSL 1 (best) BASIC20.05■□□□□ 0.8
BDNFP23560 CCK-201ENST00000334681 830 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
BDNFP23560 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC20.05■□□□□ 0.8
BDNFP23560 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
BDNFP23560 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
BDNFP23560 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC20.05■□□□□ 0.8
BDNFP23560 AL049597.2-201ENST00000565575 961 ntBASIC20.05■□□□□ 0.8
BDNFP23560 AL158151.3-201ENST00000599172 696 ntTSL 5 BASIC20.05■□□□□ 0.8
BDNFP23560 AC006011.2-201ENST00000621313 1158 ntBASIC20.05■□□□□ 0.8
BDNFP23560 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC20.05■□□□□ 0.8
BDNFP23560 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC20.05■□□□□ 0.8
BDNFP23560 MBIP-203ENST00000416007 1648 ntAPPRIS P3 TSL 1 (best) BASIC20.05■□□□□ 0.8
BDNFP23560 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC20.04■□□□□ 0.8
BDNFP23560 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
BDNFP23560 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC20.04■□□□□ 0.8
BDNFP23560 UPP1-201ENST00000331803 1932 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
BDNFP23560 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC20.04■□□□□ 0.8
BDNFP23560 KRT8P45-201ENST00000414328 1447 ntBASIC20.04■□□□□ 0.8
BDNFP23560 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
BDNFP23560 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC20.04■□□□□ 0.8
BDNFP23560 PPTC7-201ENST00000354300 4996 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
BDNFP23560 TH-202ENST00000333684 1535 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
BDNFP23560 BAD-201ENST00000309032 929 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
BDNFP23560 S100A16-203ENST00000368705 956 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
BDNFP23560 SELENOF-203ENST00000401030 727 ntTSL 2 BASIC20.04■□□□□ 0.8
BDNFP23560 AC005606.2-201ENST00000564438 614 ntTSL 2 BASIC20.04■□□□□ 0.8
BDNFP23560 ADAP1-217ENST00000611167 2118 ntTSL 5 BASIC20.04■□□□□ 0.8
BDNFP23560 TRAPPC6A-201ENST00000006275 805 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
BDNFP23560 KCNK6-201ENST00000263372 5722 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
BDNFP23560 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC20.04■□□□□ 0.8
BDNFP23560 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC20.04■□□□□ 0.8
BDNFP23560 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC20.04■□□□□ 0.8
BDNFP23560 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC20.04■□□□□ 0.8
BDNFP23560 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
BDNFP23560 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
BDNFP23560 AKIRIN2-201ENST00000257787 1662 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
BDNFP23560 SLC34A3-201ENST00000361134 2124 ntAPPRIS P1 TSL 2 BASIC20.03■□□□□ 0.8
BDNFP23560 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
BDNFP23560 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC20.03■□□□□ 0.8
BDNFP23560 SNHG10-201ENST00000500370 1531 ntTSL 2 BASIC20.03■□□□□ 0.8
BDNFP23560 ARHGAP22-210ENST00000477708 1951 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
BDNFP23560 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC20.03■□□□□ 0.8
BDNFP23560 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
BDNFP23560 HEXDC-201ENST00000327949 1733 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
BDNFP23560 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
BDNFP23560 SCGB3A1-201ENST00000292641 521 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
BDNFP23560 CD70-202ENST00000423145 881 ntTSL 2 BASIC20.03■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 30.1 ms