Protein–RNA interactions for Protein: O95985

TOP3B, DNA topoisomerase 3-beta-1, humanhuman

Known RBP Predictions only

Length 862 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3BO95985 COBL-202ENST00000395540 2332 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
TOP3BO95985 ST3GAL4-205ENST00000449406 1669 ntTSL 5 BASIC19.49■□□□□ 0.71
TOP3BO95985 SAMD14-203ENST00000503131 1938 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
TOP3BO95985 MUTYH-203ENST00000372098 1839 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
TOP3BO95985 MUTYH-204ENST00000372104 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
TOP3BO95985 MUTYH-205ENST00000372110 1809 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
TOP3BO95985 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC19.49■□□□□ 0.71
TOP3BO95985 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC19.49■□□□□ 0.71
TOP3BO95985 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC19.49■□□□□ 0.71
TOP3BO95985 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC19.49■□□□□ 0.71
TOP3BO95985 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC19.49■□□□□ 0.71
TOP3BO95985 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
TOP3BO95985 POMZP3-201ENST00000275569 1259 ntTSL 2 BASIC19.49■□□□□ 0.71
TOP3BO95985 EDARADD-201ENST00000334232 858 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
TOP3BO95985 GUK1-204ENST00000366721 689 ntTSL 3 BASIC19.49■□□□□ 0.71
TOP3BO95985 FKBP2-202ENST00000394540 1002 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
TOP3BO95985 KRT18P56-201ENST00000507275 550 ntBASIC19.49■□□□□ 0.71
TOP3BO95985 DYNLL1-205ENST00000548342 662 ntAPPRIS P1 TSL 2 BASIC19.49■□□□□ 0.71
TOP3BO95985 HSD17B12-213ENST00000637401 866 ntTSL 4 BASIC19.49■□□□□ 0.71
TOP3BO95985 RMND5A-201ENST00000283632 6301 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
TOP3BO95985 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC19.49■□□□□ 0.71
TOP3BO95985 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
TOP3BO95985 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC19.49■□□□□ 0.71
TOP3BO95985 RBM26-207ENST00000622611 5230 ntTSL 2 BASIC19.49■□□□□ 0.71
TOP3BO95985 AL049812.1-201ENST00000432563 2267 ntBASIC19.49■□□□□ 0.71
TOP3BO95985 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC19.49■□□□□ 0.71
TOP3BO95985 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
TOP3BO95985 MICU2-201ENST00000382374 1920 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
TOP3BO95985 ARFIP2-204ENST00000445086 1300 ntTSL 2 BASIC19.49■□□□□ 0.71
TOP3BO95985 NAAA-206ENST00000507956 1300 ntAPPRIS ALT2 TSL 2 BASIC19.49■□□□□ 0.71
TOP3BO95985 KLHL23-201ENST00000272797 2087 ntAPPRIS P1 TSL 2 BASIC19.48■□□□□ 0.71
TOP3BO95985 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC19.48■□□□□ 0.71
TOP3BO95985 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC19.48■□□□□ 0.71
TOP3BO95985 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
TOP3BO95985 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC19.48■□□□□ 0.71
TOP3BO95985 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC19.48■□□□□ 0.71
TOP3BO95985 BLOC1S3-201ENST00000433642 2601 ntAPPRIS P1 TSL 2 BASIC19.48■□□□□ 0.71
TOP3BO95985 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
TOP3BO95985 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
TOP3BO95985 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC19.48■□□□□ 0.71
TOP3BO95985 GUCA1B-201ENST00000230361 1113 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
TOP3BO95985 NPM3-201ENST00000370110 877 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
TOP3BO95985 HLA-G-202ENST00000376815 851 ntBASIC19.48■□□□□ 0.71
TOP3BO95985 HLA-G-203ENST00000376818 1127 ntBASIC19.48■□□□□ 0.71
TOP3BO95985 RASGRP2-205ENST00000377489 583 ntTSL 3 BASIC19.48■□□□□ 0.71
TOP3BO95985 IMMP2L-207ENST00000452895 833 ntAPPRIS P1 TSL 5 BASIC19.48■□□□□ 0.71
TOP3BO95985 ABHD11-207ENST00000458339 890 ntTSL 3 BASIC19.48■□□□□ 0.71
TOP3BO95985 GPHA2-202ENST00000532246 466 ntTSL 3 BASIC19.48■□□□□ 0.71
TOP3BO95985 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
TOP3BO95985 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC19.48■□□□□ 0.71
TOP3BO95985 CYP2E1-205ENST00000463117 1912 ntAPPRIS P1 TSL 5 BASIC19.48■□□□□ 0.71
TOP3BO95985 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
TOP3BO95985 HERPUD2-201ENST00000311350 2474 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
TOP3BO95985 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC19.48■□□□□ 0.71
TOP3BO95985 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
TOP3BO95985 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC19.48■□□□□ 0.71
TOP3BO95985 NDUFB9-206ENST00000522532 1319 ntTSL 2 BASIC19.48■□□□□ 0.71
TOP3BO95985 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC19.48■□□□□ 0.71
TOP3BO95985 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
TOP3BO95985 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
TOP3BO95985 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
TOP3BO95985 KLHL17-201ENST00000338591 2560 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
TOP3BO95985 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC19.47■□□□□ 0.71
TOP3BO95985 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
TOP3BO95985 AP001922.1-201ENST00000499390 1504 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
TOP3BO95985 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
TOP3BO95985 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
TOP3BO95985 MZB1-201ENST00000302125 825 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
TOP3BO95985 AKR1A1-201ENST00000351829 1166 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
TOP3BO95985 MARC2-202ENST00000366913 2134 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
TOP3BO95985 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC19.47■□□□□ 0.71
TOP3BO95985 GGT6-202ENST00000381550 2145 ntTSL 2 BASIC19.47■□□□□ 0.71
TOP3BO95985 HES2-206ENST00000489730 730 ntTSL 2 BASIC19.47■□□□□ 0.71
TOP3BO95985 F2R-202ENST00000505600 442 ntTSL 2 BASIC19.47■□□□□ 0.71
TOP3BO95985 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC19.47■□□□□ 0.71
TOP3BO95985 AC016582.3-201ENST00000589653 561 ntTSL 4 BASIC19.47■□□□□ 0.71
TOP3BO95985 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC19.47■□□□□ 0.71
TOP3BO95985 PPP1R36-201ENST00000298705 1405 ntAPPRIS P2 TSL 1 (best) BASIC19.47■□□□□ 0.71
TOP3BO95985 TSSC4-207ENST00000451491 1423 ntAPPRIS P3 TSL 1 (best) BASIC19.47■□□□□ 0.71
TOP3BO95985 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC19.47■□□□□ 0.71
TOP3BO95985 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC19.47■□□□□ 0.71
TOP3BO95985 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
TOP3BO95985 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC19.47■□□□□ 0.71
TOP3BO95985 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
TOP3BO95985 SPRYD7-204ENST00000613924 2285 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
TOP3BO95985 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC19.46■□□□□ 0.71
TOP3BO95985 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
TOP3BO95985 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
TOP3BO95985 MEF2B-204ENST00000424583 1405 ntAPPRIS P1 TSL 5 BASIC19.46■□□□□ 0.71
TOP3BO95985 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC19.46■□□□□ 0.71
TOP3BO95985 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
TOP3BO95985 DNAJC4-201ENST00000321460 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
TOP3BO95985 AL353807.1-201ENST00000427475 662 ntBASIC19.46■□□□□ 0.71
TOP3BO95985 RAP1B-228ENST00000542145 1060 ntTSL 2 BASIC19.46■□□□□ 0.71
TOP3BO95985 ELAC1-203ENST00000588577 694 ntTSL 2 BASIC19.46■□□□□ 0.71
TOP3BO95985 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC19.46■□□□□ 0.71
TOP3BO95985 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC19.46■□□□□ 0.71
TOP3BO95985 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC19.46■□□□□ 0.71
TOP3BO95985 SLC7A10-201ENST00000253188 1946 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
TOP3BO95985 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC19.46■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 31.5 ms