Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 AL049637.2-201ENST00000641778 930 ntBASIC18.66■□□□□ 0.58
VPS4BO75351 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC18.66■□□□□ 0.58
VPS4BO75351 AC093525.10-201ENST00000625130 1569 ntBASIC18.66■□□□□ 0.58
VPS4BO75351 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
VPS4BO75351 LMF1-212ENST00000568897 1603 ntTSL 5 BASIC18.66■□□□□ 0.58
VPS4BO75351 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC18.66■□□□□ 0.58
VPS4BO75351 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
VPS4BO75351 ST6GALNAC4-201ENST00000335791 1691 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
VPS4BO75351 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
VPS4BO75351 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
VPS4BO75351 OTOP3-201ENST00000328801 2363 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
VPS4BO75351 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC18.65■□□□□ 0.58
VPS4BO75351 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
VPS4BO75351 KAZN-203ENST00000376030 6030 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
VPS4BO75351 USP39-202ENST00000409025 1946 ntTSL 5 BASIC18.65■□□□□ 0.58
VPS4BO75351 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC18.65■□□□□ 0.58
VPS4BO75351 WDR74-201ENST00000278856 1289 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
VPS4BO75351 LRRC26-201ENST00000371542 1209 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
VPS4BO75351 SLC29A4P2-201ENST00000504749 1089 ntBASIC18.65■□□□□ 0.58
VPS4BO75351 C5orf38-206ENST00000505778 509 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
VPS4BO75351 REXO2-216ENST00000544196 452 ntTSL 3 BASIC18.65■□□□□ 0.58
VPS4BO75351 MAP3K14-AS1-202ENST00000585351 893 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
VPS4BO75351 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
VPS4BO75351 KLHL23-201ENST00000272797 2087 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
VPS4BO75351 MRPL4-202ENST00000307422 1320 ntAPPRIS P2 TSL 5 BASIC18.65■□□□□ 0.58
VPS4BO75351 ADAMTS9-202ENST00000459780 2871 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
VPS4BO75351 AC104417.2-201ENST00000562989 1793 ntBASIC18.65■□□□□ 0.58
VPS4BO75351 SPTBN4-202ENST00000352632 8676 ntAPPRIS P2 TSL 5 BASIC18.65■□□□□ 0.58
VPS4BO75351 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC18.65■□□□□ 0.58
VPS4BO75351 PLEKHG2-202ENST00000409797 2205 ntAPPRIS ALT2 TSL 2 BASIC18.65■□□□□ 0.58
VPS4BO75351 CCAR2-214ENST00000613179 1421 ntTSL 5 BASIC18.65■□□□□ 0.58
VPS4BO75351 EP300-201ENST00000263253 9587 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
VPS4BO75351 GCDH-216ENST00000591470 1867 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
VPS4BO75351 KRT15-203ENST00000393976 2394 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.58
VPS4BO75351 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
VPS4BO75351 MPZ-206ENST00000533357 1955 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
VPS4BO75351 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.58
VPS4BO75351 WWC1-201ENST00000265293 7130 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
VPS4BO75351 POMT2-201ENST00000261534 4876 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
VPS4BO75351 CACNA1A-247ENST00000637769 8648 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
VPS4BO75351 PDP1-208ENST00000520728 2554 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
VPS4BO75351 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC18.64■□□□□ 0.57
VPS4BO75351 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
VPS4BO75351 HEXDC-201ENST00000327949 1733 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
VPS4BO75351 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
VPS4BO75351 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
VPS4BO75351 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
VPS4BO75351 TTLL10-203ENST00000379290 2283 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
VPS4BO75351 Z98044.1-201ENST00000632503 1764 ntBASIC18.64■□□□□ 0.57
VPS4BO75351 PRSS57-201ENST00000329267 1025 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
VPS4BO75351 LMCD1-AS1-204ENST00000446281 932 ntTSL 5 BASIC18.64■□□□□ 0.57
VPS4BO75351 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC18.64■□□□□ 0.57
VPS4BO75351 THAP6-213ENST00000514480 1161 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
VPS4BO75351 TMEM72-203ENST00000544540 1018 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
VPS4BO75351 C12orf76-208ENST00000551185 496 ntTSL 2 BASIC18.64■□□□□ 0.57
VPS4BO75351 FAM181A-203ENST00000556222 1162 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
VPS4BO75351 NAT14-204ENST00000591590 1011 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
VPS4BO75351 PRSS57-202ENST00000613411 1090 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
VPS4BO75351 STX6-201ENST00000258301 4851 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
VPS4BO75351 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
VPS4BO75351 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.57
VPS4BO75351 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
VPS4BO75351 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
VPS4BO75351 IQSEC2-218ENST00000640694 5958 ntAPPRIS ALT2 TSL 5 BASIC18.64■□□□□ 0.57
VPS4BO75351 KRT8P8-201ENST00000434750 1448 ntBASIC18.64■□□□□ 0.57
VPS4BO75351 BLOC1S3-201ENST00000433642 2601 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
VPS4BO75351 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
VPS4BO75351 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC18.64■□□□□ 0.57
VPS4BO75351 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC18.64■□□□□ 0.57
VPS4BO75351 SLC25A15-201ENST00000338625 1586 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
VPS4BO75351 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
VPS4BO75351 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC18.63■□□□□ 0.57
VPS4BO75351 ST3GAL4-203ENST00000392669 1724 ntAPPRIS ALT1 TSL 1 (best) BASIC18.63■□□□□ 0.57
VPS4BO75351 CARD9-202ENST00000371734 1814 ntTSL 5 BASIC18.63■□□□□ 0.57
VPS4BO75351 GRB10-205ENST00000401949 2627 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
VPS4BO75351 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC18.63■□□□□ 0.57
VPS4BO75351 FP475955.4-201ENST00000623131 1990 ntBASIC18.63■□□□□ 0.57
VPS4BO75351 NFKBIZ-201ENST00000326151 2058 ntTSL 2 BASIC18.63■□□□□ 0.57
VPS4BO75351 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
VPS4BO75351 LCE2A-201ENST00000368779 592 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
VPS4BO75351 GDAP1L1-202ENST00000372952 722 ntTSL 5 BASIC18.63■□□□□ 0.57
VPS4BO75351 N4BP2L1-203ENST00000380133 903 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
VPS4BO75351 C20orf166-AS1-202ENST00000436101 761 ntTSL 5 BASIC18.63■□□□□ 0.57
VPS4BO75351 YBX1P10-201ENST00000444752 975 ntBASIC18.63■□□□□ 0.57
VPS4BO75351 AC026412.1-201ENST00000507290 1033 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
VPS4BO75351 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC18.63■□□□□ 0.57
VPS4BO75351 PRKACA-209ENST00000590853 1101 ntTSL 5 BASIC18.63■□□□□ 0.57
VPS4BO75351 AZIN1-201ENST00000337198 4721 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
VPS4BO75351 CHRNA4-207ENST00000615287 5643 ntTSL 5 BASIC18.63■□□□□ 0.57
VPS4BO75351 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC18.63■□□□□ 0.57
VPS4BO75351 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
VPS4BO75351 QSOX2-201ENST00000358701 4530 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
VPS4BO75351 NEFHP1-201ENST00000412845 2629 ntBASIC18.63■□□□□ 0.57
VPS4BO75351 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
VPS4BO75351 GOLGA6L3-201ENST00000507199 1679 ntBASIC18.63■□□□□ 0.57
VPS4BO75351 KLHDC10-201ENST00000335420 6437 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
VPS4BO75351 AL031598.1-201ENST00000561511 1773 ntBASIC18.63■□□□□ 0.57
VPS4BO75351 GDPD1-201ENST00000284116 1821 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
VPS4BO75351 IRX1P1-201ENST00000438849 1838 ntBASIC18.63■□□□□ 0.57
VPS4BO75351 UNC5B-201ENST00000335350 6841 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 29.2 ms