Protein–RNA interactions for Protein: O75150

RNF40, E3 ubiquitin-protein ligase BRE1B, humanhuman

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40O75150 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
RNF40O75150 NOMO2-201ENST00000330537 4352 ntAPPRIS ALT2 TSL 5 BASIC20.51■□□□□ 0.87
RNF40O75150 ZBTB46-203ENST00000395104 5198 ntAPPRIS P1 TSL 2 BASIC20.51■□□□□ 0.87
RNF40O75150 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
RNF40O75150 AC079598.2-202ENST00000546624 1451 ntBASIC20.51■□□□□ 0.87
RNF40O75150 AL390961.4-201ENST00000623958 2535 ntBASIC20.51■□□□□ 0.87
RNF40O75150 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC20.51■□□□□ 0.87
RNF40O75150 AC009113.1-201ENST00000570267 2443 ntBASIC20.51■□□□□ 0.87
RNF40O75150 ATP5D-201ENST00000215375 997 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
RNF40O75150 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC20.51■□□□□ 0.87
RNF40O75150 PTPRCAP-201ENST00000326294 1292 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
RNF40O75150 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
RNF40O75150 RABL2A-202ENST00000393165 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
RNF40O75150 IAH1-215ENST00000497473 1266 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
RNF40O75150 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
RNF40O75150 MAX-217ENST00000557277 728 ntTSL 3 BASIC20.51■□□□□ 0.87
RNF40O75150 AC026471.5-201ENST00000615068 467 ntBASIC20.51■□□□□ 0.87
RNF40O75150 Six3os1_6.1-201ENST00000620790 196 ntBASIC20.51■□□□□ 0.87
RNF40O75150 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
RNF40O75150 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC20.51■□□□□ 0.87
RNF40O75150 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC20.51■□□□□ 0.87
RNF40O75150 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC20.51■□□□□ 0.87
RNF40O75150 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
RNF40O75150 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
RNF40O75150 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
RNF40O75150 ADRA1A-203ENST00000380572 1697 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
RNF40O75150 AC233280.1-201ENST00000423600 1684 ntTSL 2 BASIC20.51■□□□□ 0.87
RNF40O75150 ATP6V0B-213ENST00000532642 1685 ntTSL 2 BASIC20.51■□□□□ 0.87
RNF40O75150 KIAA1324L-208ENST00000450689 6841 ntAPPRIS ALT2 TSL 5 BASIC20.51■□□□□ 0.87
RNF40O75150 CROCCP3-202ENST00000420820 1947 ntBASIC20.51■□□□□ 0.87
RNF40O75150 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC20.51■□□□□ 0.87
RNF40O75150 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
RNF40O75150 ZNF419-204ENST00000415379 2186 ntAPPRIS ALT2 TSL 2 BASIC20.51■□□□□ 0.87
RNF40O75150 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC20.51■□□□□ 0.87
RNF40O75150 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC20.51■□□□□ 0.87
RNF40O75150 KANSL1-202ENST00000432791 5343 ntAPPRIS P3 TSL 1 (best) BASIC20.51■□□□□ 0.87
RNF40O75150 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC20.51■□□□□ 0.87
RNF40O75150 BX119927.1-201ENST00000636596 1552 ntBASIC20.51■□□□□ 0.87
RNF40O75150 KLHL23-201ENST00000272797 2087 ntAPPRIS P1 TSL 2 BASIC20.5■□□□□ 0.87
RNF40O75150 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC20.5■□□□□ 0.87
RNF40O75150 ROPN1-209ENST00000495093 1376 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
RNF40O75150 FAM167A-207ENST00000534308 1642 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
RNF40O75150 MAPKAP1-205ENST00000373503 3045 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
RNF40O75150 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC20.5■□□□□ 0.87
RNF40O75150 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC20.5■□□□□ 0.87
RNF40O75150 MRPS24-201ENST00000317534 707 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
RNF40O75150 SAPCD2P4-201ENST00000424595 1171 ntBASIC20.5■□□□□ 0.87
RNF40O75150 C20orf166-AS1-202ENST00000436101 761 ntTSL 5 BASIC20.5■□□□□ 0.87
RNF40O75150 DCAKD-205ENST00000588499 990 ntAPPRIS P1 TSL 2 BASIC20.5■□□□□ 0.87
RNF40O75150 AL121829.2-201ENST00000620908 328 ntBASIC20.5■□□□□ 0.87
RNF40O75150 AC018445.1-201ENST00000621571 568 ntTSL 4 BASIC20.5■□□□□ 0.87
RNF40O75150 AC097493.4-201ENST00000641197 219 ntBASIC20.5■□□□□ 0.87
RNF40O75150 ASPRV1-201ENST00000320256 2177 ntAPPRIS P1 BASIC20.5■□□□□ 0.87
RNF40O75150 CACNA1B-204ENST00000371357 9642 ntAPPRIS ALT2 TSL 5 BASIC20.5■□□□□ 0.87
RNF40O75150 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
RNF40O75150 AL133373.2-201ENST00000623187 2828 ntBASIC20.5■□□□□ 0.87
RNF40O75150 TTC34-201ENST00000401095 8814 ntAPPRIS ALT2 TSL 5 BASIC20.5■□□□□ 0.87
RNF40O75150 AC124283.5-201ENST00000624661 1809 ntBASIC20.5■□□□□ 0.87
RNF40O75150 DYNLT3-201ENST00000378578 2217 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
RNF40O75150 DPYSL5-202ENST00000401478 1972 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
RNF40O75150 ARNT-202ENST00000358595 4887 ntAPPRIS P3 TSL 1 (best) BASIC20.5■□□□□ 0.87
RNF40O75150 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
RNF40O75150 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
RNF40O75150 TP73-202ENST00000354437 2140 ntTSL 5 BASIC20.5■□□□□ 0.87
RNF40O75150 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC20.5■□□□□ 0.87
RNF40O75150 PALM3-201ENST00000340790 2262 ntAPPRIS P2 TSL 5 BASIC20.5■□□□□ 0.87
RNF40O75150 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
RNF40O75150 SENP6-202ENST00000370010 4644 ntAPPRIS P3 TSL 1 (best) BASIC20.49■□□□□ 0.87
RNF40O75150 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
RNF40O75150 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC20.49■□□□□ 0.87
RNF40O75150 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
RNF40O75150 GRK6-201ENST00000355472 2939 ntAPPRIS P3 TSL 1 (best) BASIC20.49■□□□□ 0.87
RNF40O75150 HSF2-201ENST00000368455 2549 ntAPPRIS P3 TSL 1 (best) BASIC20.49■□□□□ 0.87
RNF40O75150 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
RNF40O75150 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC20.49■□□□□ 0.87
RNF40O75150 CMTM8-201ENST00000307526 1174 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
RNF40O75150 DDR1-228ENST00000376575 732 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
RNF40O75150 AC008105.2-201ENST00000420431 579 ntTSL 4 BASIC20.49■□□□□ 0.87
RNF40O75150 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC20.49■□□□□ 0.87
RNF40O75150 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC20.49■□□□□ 0.87
RNF40O75150 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC20.49■□□□□ 0.87
RNF40O75150 ANK1-211ENST00000522231 1060 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
RNF40O75150 ANK1-212ENST00000522543 1160 ntTSL 2 BASIC20.49■□□□□ 0.87
RNF40O75150 AC012306.2-201ENST00000609350 630 ntBASIC20.49■□□□□ 0.87
RNF40O75150 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
RNF40O75150 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC20.49■□□□□ 0.87
RNF40O75150 TFCP2-204ENST00000548115 1862 ntTSL 5 BASIC20.49■□□□□ 0.87
RNF40O75150 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC20.49■□□□□ 0.87
RNF40O75150 CADPS2-208ENST00000615869 6066 ntAPPRIS ALT1 TSL 5 BASIC20.49■□□□□ 0.87
RNF40O75150 RELL2-202ENST00000444782 2154 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
RNF40O75150 DCLK2-207ENST00000635524 2153 ntAPPRIS ALT2 TSL 5 BASIC20.49■□□□□ 0.87
RNF40O75150 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
RNF40O75150 HTR7P1-201ENST00000538670 1336 ntBASIC20.49■□□□□ 0.87
RNF40O75150 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC20.49■□□□□ 0.87
RNF40O75150 COQ10B-201ENST00000263960 2239 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
RNF40O75150 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
RNF40O75150 NLGN2-204ENST00000575301 4374 ntAPPRIS P1 TSL 5 BASIC20.48■□□□□ 0.87
RNF40O75150 SOGA3-203ENST00000525778 4077 ntAPPRIS P1 TSL 5 BASIC20.48■□□□□ 0.87
RNF40O75150 RTEL1-204ENST00000370003 2273 ntTSL 2 BASIC20.48■□□□□ 0.87
RNF40O75150 UXS1-203ENST00000409501 1839 ntAPPRIS P3 TSL 1 (best) BASIC20.48■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 24.3 ms