Protein–RNA interactions for Protein: Q8NCR9

CLRN3, Clarin-3, humanhuman

Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN3Q8NCR9 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
CLRN3Q8NCR9 GMIP-204ENST00000587238 2987 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
CLRN3Q8NCR9 APTR-204ENST00000440088 2029 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
CLRN3Q8NCR9 ELN-221ENST00000445912 2583 ntAPPRIS ALT2 TSL 2 BASIC15.23■□□□□ 0.03
CLRN3Q8NCR9 CXXC1-201ENST00000285106 2936 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
CLRN3Q8NCR9 IGFBP6-201ENST00000301464 1169 ntAPPRIS P2 TSL 1 (best) BASIC15.23■□□□□ 0.03
CLRN3Q8NCR9 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC15.23■□□□□ 0.03
CLRN3Q8NCR9 AL590094.1-201ENST00000635581 706 ntTSL 2 BASIC15.23■□□□□ 0.03
CLRN3Q8NCR9 COBL-201ENST00000265136 5291 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
CLRN3Q8NCR9 MFSD2A-201ENST00000372809 2173 ntTSL 2 BASIC15.23■□□□□ 0.03
CLRN3Q8NCR9 SLC22A11-202ENST00000377581 1975 ntTSL 5 BASIC15.23■□□□□ 0.03
CLRN3Q8NCR9 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
CLRN3Q8NCR9 RAD1-202ENST00000341754 2341 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
CLRN3Q8NCR9 ZNF274-202ENST00000345813 2678 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
CLRN3Q8NCR9 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
CLRN3Q8NCR9 PPP1R21-206ENST00000449090 3049 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
CLRN3Q8NCR9 SLC22A11-203ENST00000377585 2124 ntTSL 2 BASIC15.23■□□□□ 0.03
CLRN3Q8NCR9 LRP4-201ENST00000378623 8076 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
CLRN3Q8NCR9 USP39-202ENST00000409025 1946 ntTSL 5 BASIC15.23■□□□□ 0.03
CLRN3Q8NCR9 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC15.23■□□□□ 0.03
CLRN3Q8NCR9 MCMBP-201ENST00000360003 4169 ntAPPRIS P3 TSL 2 BASIC15.23■□□□□ 0.03
CLRN3Q8NCR9 UBR3-203ENST00000418381 7951 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
CLRN3Q8NCR9 MC1R-204ENST00000639847 2567 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
CLRN3Q8NCR9 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC15.23■□□□□ 0.03
CLRN3Q8NCR9 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
CLRN3Q8NCR9 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
CLRN3Q8NCR9 NFATC4-228ENST00000556759 2025 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
CLRN3Q8NCR9 MATN3-201ENST00000407540 2524 ntAPPRIS P2 TSL 1 (best) BASIC15.22■□□□□ 0.03
CLRN3Q8NCR9 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
CLRN3Q8NCR9 SMUG1-215ENST00000508394 1697 ntAPPRIS P1 TSL 2 BASIC15.22■□□□□ 0.03
CLRN3Q8NCR9 ZNF18-204ENST00000580306 2330 ntAPPRIS P3 TSL 2 BASIC15.22■□□□□ 0.03
CLRN3Q8NCR9 AL136379.1-201ENST00000623471 2642 ntBASIC15.22■□□□□ 0.03
CLRN3Q8NCR9 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
CLRN3Q8NCR9 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC15.22■□□□□ 0.03
CLRN3Q8NCR9 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
CLRN3Q8NCR9 GRIN2C-202ENST00000347612 2929 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
CLRN3Q8NCR9 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
CLRN3Q8NCR9 CBWD6-201ENST00000377391 1792 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CLRN3Q8NCR9 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC15.22■□□□□ 0.03
CLRN3Q8NCR9 RUNX1-203ENST00000358356 2720 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
CLRN3Q8NCR9 PCDHA1-201ENST00000378133 2726 ntBASIC15.22■□□□□ 0.03
CLRN3Q8NCR9 AL121758.1-201ENST00000488788 2714 ntAPPRIS P1 TSL 2 BASIC15.22■□□□□ 0.03
CLRN3Q8NCR9 ZNF512B-201ENST00000369888 5919 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CLRN3Q8NCR9 ARSA-201ENST00000216124 2050 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CLRN3Q8NCR9 PAX6-203ENST00000379109 3182 ntAPPRIS ALT1 TSL 2 BASIC15.22■□□□□ 0.03
CLRN3Q8NCR9 TCF25-202ENST00000263347 2377 ntTSL 5 BASIC15.22■□□□□ 0.03
CLRN3Q8NCR9 LRRC36-201ENST00000329956 2395 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CLRN3Q8NCR9 LMNB1-202ENST00000395354 1572 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
CLRN3Q8NCR9 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CLRN3Q8NCR9 MAPK14-201ENST00000229794 3779 ntAPPRIS P5 TSL 1 (best) BASIC15.22■□□□□ 0.03
CLRN3Q8NCR9 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CLRN3Q8NCR9 YPEL5-205ENST00000402708 1735 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CLRN3Q8NCR9 PSTPIP1-203ENST00000558012 1896 ntAPPRIS P2 TSL 1 (best) BASIC15.22■□□□□ 0.03
CLRN3Q8NCR9 RREB1-201ENST00000334984 5789 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
CLRN3Q8NCR9 PHF20L1-201ENST00000220847 3297 ntTSL 5 BASIC15.22■□□□□ 0.03
CLRN3Q8NCR9 F11R-202ENST00000368026 4835 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CLRN3Q8NCR9 PHF1-202ENST00000374516 2330 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CLRN3Q8NCR9 MTCL1-205ENST00000517570 6009 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
CLRN3Q8NCR9 UBALD1-205ENST00000590891 2641 ntBASIC15.22■□□□□ 0.03
CLRN3Q8NCR9 TDRKH-207ENST00000458431 2768 ntAPPRIS P2 TSL 1 (best) BASIC15.22■□□□□ 0.03
CLRN3Q8NCR9 SYBU-230ENST00000532779 2765 ntAPPRIS ALT2 TSL 2 BASIC15.22■□□□□ 0.03
CLRN3Q8NCR9 CCNA2-202ENST00000618014 2797 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CLRN3Q8NCR9 LRRC58-201ENST00000295628 7903 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CLRN3Q8NCR9 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CLRN3Q8NCR9 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC15.22■□□□□ 0.03
CLRN3Q8NCR9 ZNF707-223ENST00000532205 2865 ntAPPRIS P1 TSL 2 BASIC15.22■□□□□ 0.03
CLRN3Q8NCR9 PLCB2-201ENST00000260402 4616 ntAPPRIS P3 TSL 2 BASIC15.21■□□□□ 0.03
CLRN3Q8NCR9 C2CD4C-201ENST00000332235 3129 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.03
CLRN3Q8NCR9 FGD4-212ENST00000534526 2977 ntTSL 5 BASIC15.21■□□□□ 0.03
CLRN3Q8NCR9 VIPR1-217ENST00000543411 2681 ntTSL 2 BASIC15.21■□□□□ 0.03
CLRN3Q8NCR9 PDX1-201ENST00000381033 2501 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
CLRN3Q8NCR9 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC15.21■□□□□ 0.03
CLRN3Q8NCR9 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
CLRN3Q8NCR9 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC15.21■□□□□ 0.03
CLRN3Q8NCR9 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC15.21■□□□□ 0.03
CLRN3Q8NCR9 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC15.21■□□□□ 0.03
CLRN3Q8NCR9 TPI1-210ENST00000613953 1460 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
CLRN3Q8NCR9 SEMA4B-202ENST00000411539 3807 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
CLRN3Q8NCR9 ACSS1-201ENST00000323482 3680 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
CLRN3Q8NCR9 CCDC8-201ENST00000307522 3213 ntAPPRIS P1 BASIC15.21■□□□□ 0.03
CLRN3Q8NCR9 HDAC10-222ENST00000626012 2607 ntTSL 5 BASIC15.21■□□□□ 0.03
CLRN3Q8NCR9 MYEOV-203ENST00000535407 2306 ntAPPRIS ALT2 TSL 2 BASIC15.21■□□□□ 0.03
CLRN3Q8NCR9 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
CLRN3Q8NCR9 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
CLRN3Q8NCR9 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
CLRN3Q8NCR9 CHST14-201ENST00000306243 3574 ntAPPRIS P1 BASIC15.21■□□□□ 0.03
CLRN3Q8NCR9 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC15.21■□□□□ 0.03
CLRN3Q8NCR9 AC138649.1-201ENST00000619611 1449 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
CLRN3Q8NCR9 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
CLRN3Q8NCR9 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
CLRN3Q8NCR9 BX664725.1-201ENST00000438252 379 ntBASIC15.21■□□□□ 0.03
CLRN3Q8NCR9 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC15.21■□□□□ 0.03
CLRN3Q8NCR9 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.03
CLRN3Q8NCR9 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
CLRN3Q8NCR9 TMEM170A-202ENST00000561878 1072 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
CLRN3Q8NCR9 AC009163.4-201ENST00000567194 530 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.03
CLRN3Q8NCR9 AC137630.3-201ENST00000607245 391 ntBASIC15.21■□□□□ 0.03
CLRN3Q8NCR9 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC15.21■□□□□ 0.03
CLRN3Q8NCR9 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
CLRN3Q8NCR9 DAPK1-207ENST00000469640 5899 ntTSL 5 BASIC15.21■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 26 ms