Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC15.94■□□□□ 0.14
CCDC28AQ8IWP9 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC15.94■□□□□ 0.14
CCDC28AQ8IWP9 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
CCDC28AQ8IWP9 PABPN1-207ENST00000556821 1220 ntTSL 2 BASIC15.94■□□□□ 0.14
CCDC28AQ8IWP9 Z97653.1-201ENST00000567096 446 ntTSL 3 BASIC15.94■□□□□ 0.14
CCDC28AQ8IWP9 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC15.94■□□□□ 0.14
CCDC28AQ8IWP9 AC131212.1-201ENST00000613771 668 ntBASIC15.94■□□□□ 0.14
CCDC28AQ8IWP9 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC15.94■□□□□ 0.14
CCDC28AQ8IWP9 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC15.94■□□□□ 0.14
CCDC28AQ8IWP9 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
CCDC28AQ8IWP9 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
CCDC28AQ8IWP9 SLC27A5-207ENST00000601355 1987 ntAPPRIS ALT2 TSL 2 BASIC15.94■□□□□ 0.14
CCDC28AQ8IWP9 SPINT1-202ENST00000562057 2456 ntAPPRIS ALT2 TSL 1 (best) BASIC15.94■□□□□ 0.14
CCDC28AQ8IWP9 FMR1-207ENST00000439526 3699 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
CCDC28AQ8IWP9 KIF5C-201ENST00000435030 6931 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
CCDC28AQ8IWP9 CTDP1-201ENST00000075430 3538 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
CCDC28AQ8IWP9 AL136379.1-201ENST00000623471 2642 ntBASIC15.94■□□□□ 0.14
CCDC28AQ8IWP9 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
CCDC28AQ8IWP9 ADGRB2-206ENST00000398556 4879 ntAPPRIS ALT2 TSL 5 BASIC15.94■□□□□ 0.14
CCDC28AQ8IWP9 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
CCDC28AQ8IWP9 PDZD8-201ENST00000334464 9699 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
CCDC28AQ8IWP9 MARCH1-203ENST00000503008 5877 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
CCDC28AQ8IWP9 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC15.93■□□□□ 0.14
CCDC28AQ8IWP9 ST14-201ENST00000278742 3539 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
CCDC28AQ8IWP9 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC15.93■□□□□ 0.14
CCDC28AQ8IWP9 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
CCDC28AQ8IWP9 SYT6-210ENST00000641643 1587 ntBASIC15.93■□□□□ 0.14
CCDC28AQ8IWP9 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
CCDC28AQ8IWP9 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
CCDC28AQ8IWP9 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC15.93■□□□□ 0.14
CCDC28AQ8IWP9 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC15.93■□□□□ 0.14
CCDC28AQ8IWP9 AC006455.2-201ENST00000429931 906 ntBASIC15.93■□□□□ 0.14
CCDC28AQ8IWP9 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
CCDC28AQ8IWP9 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC15.93■□□□□ 0.14
CCDC28AQ8IWP9 TCEA1-214ENST00000640382 1234 ntTSL 5 BASIC15.93■□□□□ 0.14
CCDC28AQ8IWP9 ZNF707-223ENST00000532205 2865 ntAPPRIS P1 TSL 2 BASIC15.93■□□□□ 0.14
CCDC28AQ8IWP9 HECTD2-204ENST00000446394 4939 ntTSL 2 BASIC15.93■□□□□ 0.14
CCDC28AQ8IWP9 OR4D1-202ENST00000641449 4925 ntAPPRIS P1 BASIC15.93■□□□□ 0.14
CCDC28AQ8IWP9 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
CCDC28AQ8IWP9 NKPD1-201ENST00000317951 4233 ntAPPRIS P1 TSL 2 BASIC15.93■□□□□ 0.14
CCDC28AQ8IWP9 BPIFB4-201ENST00000375483 2159 ntAPPRIS P1 TSL 5 BASIC15.93■□□□□ 0.14
CCDC28AQ8IWP9 FAM227A-201ENST00000355830 2417 ntAPPRIS P5 TSL 5 BASIC15.93■□□□□ 0.14
CCDC28AQ8IWP9 ANXA6-211ENST00000521512 1793 ntTSL 5 BASIC15.92■□□□□ 0.14
CCDC28AQ8IWP9 AL031598.1-201ENST00000561511 1773 ntBASIC15.92■□□□□ 0.14
CCDC28AQ8IWP9 ENC1-207ENST00000618628 5657 ntAPPRIS P1 TSL 5 BASIC15.92■□□□□ 0.14
CCDC28AQ8IWP9 PPP1R21-206ENST00000449090 3049 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
CCDC28AQ8IWP9 SLC26A5-209ENST00000393735 1947 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
CCDC28AQ8IWP9 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
CCDC28AQ8IWP9 IGF2-204ENST00000381406 5179 ntAPPRIS ALT1 TSL 2 BASIC15.92■□□□□ 0.14
CCDC28AQ8IWP9 MYOC-201ENST00000037502 2095 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
CCDC28AQ8IWP9 AL645608.8-201ENST00000606034 2086 ntBASIC15.92■□□□□ 0.14
CCDC28AQ8IWP9 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
CCDC28AQ8IWP9 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
CCDC28AQ8IWP9 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
CCDC28AQ8IWP9 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC15.92■□□□□ 0.14
CCDC28AQ8IWP9 AL512631.2-201ENST00000604634 923 ntBASIC15.92■□□□□ 0.14
CCDC28AQ8IWP9 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC15.92■□□□□ 0.14
CCDC28AQ8IWP9 WNT5B-202ENST00000397196 2303 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
CCDC28AQ8IWP9 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC15.92■□□□□ 0.14
CCDC28AQ8IWP9 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
CCDC28AQ8IWP9 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC15.92■□□□□ 0.14
CCDC28AQ8IWP9 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC15.92■□□□□ 0.14
CCDC28AQ8IWP9 PTCH1-201ENST00000331920 8057 ntAPPRIS P1 TSL 5 BASIC15.92■□□□□ 0.14
CCDC28AQ8IWP9 KLC1-202ENST00000334553 2524 ntTSL 5 BASIC15.92■□□□□ 0.14
CCDC28AQ8IWP9 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC15.92■□□□□ 0.14
CCDC28AQ8IWP9 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC15.92■□□□□ 0.14
CCDC28AQ8IWP9 AHRR-201ENST00000316418 5661 ntAPPRIS P3 TSL 1 (best) BASIC15.92■□□□□ 0.14
CCDC28AQ8IWP9 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC15.92■□□□□ 0.14
CCDC28AQ8IWP9 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
CCDC28AQ8IWP9 MAPK14-201ENST00000229794 3779 ntAPPRIS P5 TSL 1 (best) BASIC15.91■□□□□ 0.14
CCDC28AQ8IWP9 SPG7-201ENST00000268704 3076 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
CCDC28AQ8IWP9 CHST14-201ENST00000306243 3574 ntAPPRIS P1 BASIC15.91■□□□□ 0.14
CCDC28AQ8IWP9 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC15.91■□□□□ 0.14
CCDC28AQ8IWP9 GLG1-202ENST00000422840 4748 ntAPPRIS ALT2 TSL 1 (best) BASIC15.91■□□□□ 0.14
CCDC28AQ8IWP9 MPIG6B-204ENST00000375809 2396 ntAPPRIS ALT2 TSL 1 (best) BASIC15.91■□□□□ 0.14
CCDC28AQ8IWP9 FBXO46-201ENST00000317683 3001 ntAPPRIS P1 TSL 2 BASIC15.91■□□□□ 0.14
CCDC28AQ8IWP9 LINC00554-201ENST00000564841 3011 ntBASIC15.91■□□□□ 0.14
CCDC28AQ8IWP9 ZNF324-203ENST00000536459 5653 ntAPPRIS P1 TSL 2 BASIC15.91■□□□□ 0.14
CCDC28AQ8IWP9 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
CCDC28AQ8IWP9 ADGRB2-212ENST00000527361 4919 ntAPPRIS ALT2 TSL 1 (best) BASIC15.91■□□□□ 0.14
CCDC28AQ8IWP9 USB1-201ENST00000219281 2282 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
CCDC28AQ8IWP9 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
CCDC28AQ8IWP9 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC15.91■□□□□ 0.14
CCDC28AQ8IWP9 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
CCDC28AQ8IWP9 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC15.91■□□□□ 0.14
CCDC28AQ8IWP9 LINC01979-201ENST00000576738 5271 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
CCDC28AQ8IWP9 CBS-201ENST00000352178 2583 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
CCDC28AQ8IWP9 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC15.91■□□□□ 0.14
CCDC28AQ8IWP9 CCDC8-201ENST00000307522 3213 ntAPPRIS P1 BASIC15.91■□□□□ 0.14
CCDC28AQ8IWP9 FGD4-212ENST00000534526 2977 ntTSL 5 BASIC15.91■□□□□ 0.14
CCDC28AQ8IWP9 SURF4-208ENST00000613129 3148 ntTSL 2 BASIC15.91■□□□□ 0.14
CCDC28AQ8IWP9 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC15.91■□□□□ 0.14
CCDC28AQ8IWP9 CFC1B-202ENST00000619050 1554 ntTSL 5 BASIC15.91■□□□□ 0.14
CCDC28AQ8IWP9 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
CCDC28AQ8IWP9 LRRC59-201ENST00000225972 2910 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
CCDC28AQ8IWP9 AES-201ENST00000221561 1884 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
CCDC28AQ8IWP9 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC15.91■□□□□ 0.14
CCDC28AQ8IWP9 STAT5A-201ENST00000345506 4301 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
CCDC28AQ8IWP9 DHFR-201ENST00000439211 3917 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
CCDC28AQ8IWP9 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC15.9■□□□□ 0.14
Retrieved 100 of 98,524 protein–RNA pairs in 29.5 ms