Protein–RNA interactions for Protein: Q7Z3V4

UBE3B, Ubiquitin-protein ligase E3B, humanhuman

Predictions only

Length 1,068 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3BQ7Z3V4 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC23.81■■□□□ 1.4
UBE3BQ7Z3V4 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC23.81■■□□□ 1.4
UBE3BQ7Z3V4 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC23.81■■□□□ 1.4
UBE3BQ7Z3V4 TMEM160-201ENST00000253047 663 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
UBE3BQ7Z3V4 AC012618.3-202ENST00000440004 472 ntTSL 4 BASIC23.81■■□□□ 1.4
UBE3BQ7Z3V4 AC007563.2-201ENST00000447289 552 ntTSL 5 BASIC23.81■■□□□ 1.4
UBE3BQ7Z3V4 NT5C-210ENST00000582160 860 ntTSL 2 BASIC23.81■■□□□ 1.4
UBE3BQ7Z3V4 AC010422.3-201ENST00000597692 838 ntAPPRIS P1 TSL 2 BASIC23.81■■□□□ 1.4
UBE3BQ7Z3V4 OBP2B-205ENST00000618116 961 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
UBE3BQ7Z3V4 RELB-202ENST00000505236 2219 ntAPPRIS ALT2 TSL 5 BASIC23.81■■□□□ 1.4
UBE3BQ7Z3V4 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
UBE3BQ7Z3V4 GDF5OS-201ENST00000374375 1734 ntAPPRIS P1 TSL 2 BASIC23.81■■□□□ 1.4
UBE3BQ7Z3V4 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
UBE3BQ7Z3V4 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
UBE3BQ7Z3V4 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC23.8■■□□□ 1.4
UBE3BQ7Z3V4 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC23.8■■□□□ 1.4
UBE3BQ7Z3V4 PCID2-202ENST00000337344 1898 ntAPPRIS P1 TSL 2 BASIC23.8■■□□□ 1.4
UBE3BQ7Z3V4 ANKRD20A18P-201ENST00000359341 492 ntBASIC23.8■■□□□ 1.4
UBE3BQ7Z3V4 Telomerase-vert.1-201ENST00000363312 438 ntBASIC23.8■■□□□ 1.4
UBE3BQ7Z3V4 ST20-202ENST00000485386 529 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
UBE3BQ7Z3V4 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC23.8■■□□□ 1.4
UBE3BQ7Z3V4 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC23.8■■□□□ 1.4
UBE3BQ7Z3V4 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC23.8■■□□□ 1.4
UBE3BQ7Z3V4 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC23.8■■□□□ 1.4
UBE3BQ7Z3V4 OR13J1-201ENST00000377981 1339 ntAPPRIS P1 BASIC23.8■■□□□ 1.4
UBE3BQ7Z3V4 VLDLR-AS1-205ENST00000599229 1346 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
UBE3BQ7Z3V4 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
UBE3BQ7Z3V4 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
UBE3BQ7Z3V4 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
UBE3BQ7Z3V4 TSPY5P-201ENST00000426936 936 ntBASIC23.79■■□□□ 1.4
UBE3BQ7Z3V4 PHB2-202ENST00000440277 996 ntTSL 5 BASIC23.79■■□□□ 1.4
UBE3BQ7Z3V4 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC23.79■■□□□ 1.4
UBE3BQ7Z3V4 RNF146-204ENST00000476956 884 ntTSL 2 BASIC23.79■■□□□ 1.4
UBE3BQ7Z3V4 CMTM3-210ENST00000565666 769 ntTSL 3 BASIC23.79■■□□□ 1.4
UBE3BQ7Z3V4 AC087388.1-201ENST00000571370 1112 ntBASIC23.79■■□□□ 1.4
UBE3BQ7Z3V4 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC23.79■■□□□ 1.4
UBE3BQ7Z3V4 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC23.79■■□□□ 1.4
UBE3BQ7Z3V4 AC233280.1-201ENST00000423600 1684 ntTSL 2 BASIC23.79■■□□□ 1.4
UBE3BQ7Z3V4 GOLGA2P10-204ENST00000618004 1349 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
UBE3BQ7Z3V4 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC23.79■■□□□ 1.4
UBE3BQ7Z3V4 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC23.79■■□□□ 1.4
UBE3BQ7Z3V4 OLFM1-204ENST00000371793 2444 ntAPPRIS P1 TSL 3 BASIC23.79■■□□□ 1.4
UBE3BQ7Z3V4 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
UBE3BQ7Z3V4 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
UBE3BQ7Z3V4 AC091230.1-202ENST00000564823 5356 ntTSL 2 BASIC23.78■■□□□ 1.4
UBE3BQ7Z3V4 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
UBE3BQ7Z3V4 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC23.78■■□□□ 1.4
UBE3BQ7Z3V4 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC23.78■■□□□ 1.4
UBE3BQ7Z3V4 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC23.78■■□□□ 1.4
UBE3BQ7Z3V4 ZNF337-AS1-204ENST00000428254 817 ntTSL 5 BASIC23.78■■□□□ 1.4
UBE3BQ7Z3V4 AC007731.5-201ENST00000429594 644 ntAPPRIS P1 TSL 5 BASIC23.78■■□□□ 1.4
UBE3BQ7Z3V4 AC009947.2-201ENST00000444014 672 ntBASIC23.78■■□□□ 1.4
UBE3BQ7Z3V4 PRKCB-209ENST00000498058 480 ntTSL 3 BASIC23.78■■□□□ 1.4
UBE3BQ7Z3V4 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC23.78■■□□□ 1.4
UBE3BQ7Z3V4 AL441883.1-201ENST00000566170 1045 ntBASIC23.78■■□□□ 1.4
UBE3BQ7Z3V4 ELAC2-212ENST00000578071 579 ntTSL 4 BASIC23.78■■□□□ 1.4
UBE3BQ7Z3V4 AC011498.2-201ENST00000588798 540 ntTSL 3 BASIC23.78■■□□□ 1.4
UBE3BQ7Z3V4 JOSD2-204ENST00000598418 996 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
UBE3BQ7Z3V4 C16orf74-207ENST00000602914 761 ntAPPRIS ALT2 TSL 2 BASIC23.78■■□□□ 1.4
UBE3BQ7Z3V4 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC23.78■■□□□ 1.4
UBE3BQ7Z3V4 GPAT2P1-201ENST00000444924 1672 ntBASIC23.78■■□□□ 1.4
UBE3BQ7Z3V4 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC23.78■■□□□ 1.4
UBE3BQ7Z3V4 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC23.78■■□□□ 1.4
UBE3BQ7Z3V4 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC23.78■■□□□ 1.4
UBE3BQ7Z3V4 JAKMIP1-208ENST00000637373 1362 ntTSL 5 BASIC23.78■■□□□ 1.4
UBE3BQ7Z3V4 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC23.77■■□□□ 1.4
UBE3BQ7Z3V4 SPATA6L-207ENST00000475086 1444 ntAPPRIS P1 TSL 2 BASIC23.77■■□□□ 1.4
UBE3BQ7Z3V4 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC23.77■■□□□ 1.4
UBE3BQ7Z3V4 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
UBE3BQ7Z3V4 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
UBE3BQ7Z3V4 FAM8A6P-201ENST00000407496 1135 ntBASIC23.77■■□□□ 1.4
UBE3BQ7Z3V4 TPM1-226ENST00000560959 925 ntTSL 2 BASIC23.77■■□□□ 1.4
UBE3BQ7Z3V4 UQCR11-201ENST00000585671 753 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
UBE3BQ7Z3V4 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC23.77■■□□□ 1.4
UBE3BQ7Z3V4 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
UBE3BQ7Z3V4 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC23.77■■□□□ 1.4
UBE3BQ7Z3V4 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
UBE3BQ7Z3V4 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC23.77■■□□□ 1.4
UBE3BQ7Z3V4 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
UBE3BQ7Z3V4 SPAG16-209ENST00000447990 1330 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
UBE3BQ7Z3V4 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC23.77■■□□□ 1.4
UBE3BQ7Z3V4 C21orf58-205ENST00000397683 1674 ntAPPRIS ALT2 TSL 2 BASIC23.76■■□□□ 1.39
UBE3BQ7Z3V4 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
UBE3BQ7Z3V4 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC23.76■■□□□ 1.39
UBE3BQ7Z3V4 CYP2F1-201ENST00000331105 1720 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
UBE3BQ7Z3V4 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC23.76■■□□□ 1.39
UBE3BQ7Z3V4 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC23.76■■□□□ 1.39
UBE3BQ7Z3V4 PLCG1-AS1-201ENST00000454626 1462 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
UBE3BQ7Z3V4 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC23.76■■□□□ 1.39
UBE3BQ7Z3V4 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC23.76■■□□□ 1.39
UBE3BQ7Z3V4 AZU1-201ENST00000233997 908 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
UBE3BQ7Z3V4 NPM3-201ENST00000370110 877 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
UBE3BQ7Z3V4 L34079.3-201ENST00000600242 546 ntTSL 4 BASIC23.76■■□□□ 1.39
UBE3BQ7Z3V4 PRLHR-202ENST00000636925 1275 ntAPPRIS P1 BASIC23.76■■□□□ 1.39
UBE3BQ7Z3V4 PEX16-202ENST00000378750 1335 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
UBE3BQ7Z3V4 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC23.76■■□□□ 1.39
UBE3BQ7Z3V4 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC23.76■■□□□ 1.39
UBE3BQ7Z3V4 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC23.76■■□□□ 1.39
UBE3BQ7Z3V4 PIGQ-209ENST00000470411 2112 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
UBE3BQ7Z3V4 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
Retrieved 100 of 98,524 protein–RNA pairs in 19.4 ms