Protein–RNA interactions for Protein: Q5ST30

VARS2, Valine--tRNA ligase, mitochondrial, humanhuman

Known RBP Predictions only

Length 1,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VARS2Q5ST30 HOMER2P1-201ENST00000455653 964 ntBASIC20.21■□□□□ 0.83
VARS2Q5ST30 APBB3-216ENST00000511201 1014 ntTSL 5 BASIC20.21■□□□□ 0.83
VARS2Q5ST30 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC20.21■□□□□ 0.83
VARS2Q5ST30 AZIN1-AS1-214ENST00000522850 473 ntTSL 3 BASIC20.21■□□□□ 0.83
VARS2Q5ST30 AKTIP-212ENST00000570004 1162 ntAPPRIS P3 TSL 1 (best) BASIC20.21■□□□□ 0.83
VARS2Q5ST30 UBA52-210ENST00000598780 668 ntAPPRIS P1 TSL 3 BASIC20.21■□□□□ 0.83
VARS2Q5ST30 TCP11-204ENST00000373979 1882 ntAPPRIS P3 TSL 5 BASIC20.21■□□□□ 0.83
VARS2Q5ST30 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
VARS2Q5ST30 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC20.21■□□□□ 0.83
VARS2Q5ST30 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
VARS2Q5ST30 AC073130.3-201ENST00000624389 2278 ntBASIC20.21■□□□□ 0.83
VARS2Q5ST30 TP73-202ENST00000354437 2140 ntTSL 5 BASIC20.21■□□□□ 0.83
VARS2Q5ST30 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
VARS2Q5ST30 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC20.21■□□□□ 0.83
VARS2Q5ST30 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC20.21■□□□□ 0.83
VARS2Q5ST30 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC20.21■□□□□ 0.83
VARS2Q5ST30 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
VARS2Q5ST30 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
VARS2Q5ST30 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
VARS2Q5ST30 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.83
VARS2Q5ST30 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC20.2■□□□□ 0.82
VARS2Q5ST30 Z82202.1-201ENST00000623446 1880 ntBASIC20.2■□□□□ 0.82
VARS2Q5ST30 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC20.2■□□□□ 0.82
VARS2Q5ST30 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
VARS2Q5ST30 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC20.2■□□□□ 0.82
VARS2Q5ST30 ISCU-202ENST00000392807 1069 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
VARS2Q5ST30 AP000523.1-201ENST00000398242 1049 ntBASIC20.2■□□□□ 0.82
VARS2Q5ST30 AC114763.1-202ENST00000414911 867 ntTSL 3 BASIC20.2■□□□□ 0.82
VARS2Q5ST30 ISCU-203ENST00000431221 799 ntTSL 2 BASIC20.2■□□□□ 0.82
VARS2Q5ST30 AL359075.1-203ENST00000462729 1002 ntBASIC20.2■□□□□ 0.82
VARS2Q5ST30 SSSCA1-206ENST00000531405 879 ntTSL 2 BASIC20.2■□□□□ 0.82
VARS2Q5ST30 MRPL46-202ENST00000558531 1002 ntTSL 2 BASIC20.2■□□□□ 0.82
VARS2Q5ST30 CLN6-204ENST00000564752 900 ntTSL 3 BASIC20.2■□□□□ 0.82
VARS2Q5ST30 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC20.2■□□□□ 0.82
VARS2Q5ST30 C10orf142-201ENST00000619243 1110 ntAPPRIS P2 TSL 2 BASIC20.2■□□□□ 0.82
VARS2Q5ST30 ART1-201ENST00000250693 1312 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
VARS2Q5ST30 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
VARS2Q5ST30 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC20.2■□□□□ 0.82
VARS2Q5ST30 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
VARS2Q5ST30 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
VARS2Q5ST30 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC20.2■□□□□ 0.82
VARS2Q5ST30 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC20.2■□□□□ 0.82
VARS2Q5ST30 JAKMIP1-208ENST00000637373 1362 ntTSL 5 BASIC20.2■□□□□ 0.82
VARS2Q5ST30 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC20.19■□□□□ 0.82
VARS2Q5ST30 MCIDAS-201ENST00000513312 1736 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
VARS2Q5ST30 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC20.19■□□□□ 0.82
VARS2Q5ST30 PYDC1-201ENST00000302964 813 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
VARS2Q5ST30 LCE4A-202ENST00000368777 672 ntAPPRIS P1 TSL 2 BASIC20.19■□□□□ 0.82
VARS2Q5ST30 IMP3-202ENST00000403490 1237 ntAPPRIS P1 BASIC20.19■□□□□ 0.82
VARS2Q5ST30 UPK3BP1-201ENST00000428678 509 ntBASIC20.19■□□□□ 0.82
VARS2Q5ST30 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC20.19■□□□□ 0.82
VARS2Q5ST30 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC20.19■□□□□ 0.82
VARS2Q5ST30 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
VARS2Q5ST30 NEK4P2-201ENST00000580004 1012 ntBASIC20.19■□□□□ 0.82
VARS2Q5ST30 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC20.19■□□□□ 0.82
VARS2Q5ST30 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC20.19■□□□□ 0.82
VARS2Q5ST30 CR769767.2-201ENST00000622735 460 ntBASIC20.19■□□□□ 0.82
VARS2Q5ST30 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC20.19■□□□□ 0.82
VARS2Q5ST30 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
VARS2Q5ST30 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
VARS2Q5ST30 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC20.19■□□□□ 0.82
VARS2Q5ST30 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
VARS2Q5ST30 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC20.19■□□□□ 0.82
VARS2Q5ST30 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC20.19■□□□□ 0.82
VARS2Q5ST30 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
VARS2Q5ST30 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
VARS2Q5ST30 OTOP2-201ENST00000331427 2147 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
VARS2Q5ST30 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
VARS2Q5ST30 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
VARS2Q5ST30 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
VARS2Q5ST30 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
VARS2Q5ST30 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC20.18■□□□□ 0.82
VARS2Q5ST30 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC20.18■□□□□ 0.82
VARS2Q5ST30 TYMSOS-201ENST00000323813 844 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
VARS2Q5ST30 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
VARS2Q5ST30 AP006284.1-202ENST00000527113 527 ntTSL 4 BASIC20.18■□□□□ 0.82
VARS2Q5ST30 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
VARS2Q5ST30 ELAVL1-202ENST00000593807 856 ntTSL 3 BASIC20.18■□□□□ 0.82
VARS2Q5ST30 CENPS-CORT-205ENST00000602787 571 ntAPPRIS P1 TSL 3 BASIC20.18■□□□□ 0.82
VARS2Q5ST30 AL121894.2-201ENST00000602977 491 ntBASIC20.18■□□□□ 0.82
VARS2Q5ST30 AL358472.4-201ENST00000633140 710 ntBASIC20.18■□□□□ 0.82
VARS2Q5ST30 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
VARS2Q5ST30 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC20.18■□□□□ 0.82
VARS2Q5ST30 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC20.18■□□□□ 0.82
VARS2Q5ST30 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC20.18■□□□□ 0.82
VARS2Q5ST30 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
VARS2Q5ST30 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
VARS2Q5ST30 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC20.18■□□□□ 0.82
VARS2Q5ST30 ZMYM5-202ENST00000382905 1382 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
VARS2Q5ST30 PHLDB3-201ENST00000292140 2591 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
VARS2Q5ST30 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
VARS2Q5ST30 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
VARS2Q5ST30 CRADD-202ENST00000542893 1403 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
VARS2Q5ST30 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
VARS2Q5ST30 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
VARS2Q5ST30 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
VARS2Q5ST30 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
VARS2Q5ST30 GPAT2P1-201ENST00000444924 1672 ntBASIC20.17■□□□□ 0.82
VARS2Q5ST30 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
VARS2Q5ST30 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC20.17■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 21.1 ms