Protein–RNA interactions for Protein: P51956

NEK3, Serine/threonine-protein kinase Nek3, humanhuman

Predictions only

Length 506 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3P51956 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
NEK3P51956 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC19.67■□□□□ 0.74
NEK3P51956 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC19.67■□□□□ 0.74
NEK3P51956 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC19.67■□□□□ 0.74
NEK3P51956 ADGRB1-201ENST00000323289 5527 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
NEK3P51956 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC19.67■□□□□ 0.74
NEK3P51956 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC19.67■□□□□ 0.74
NEK3P51956 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC19.67■□□□□ 0.74
NEK3P51956 BNIP3L-204ENST00000520409 739 ntTSL 2 BASIC19.67■□□□□ 0.74
NEK3P51956 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC19.67■□□□□ 0.74
NEK3P51956 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC19.67■□□□□ 0.74
NEK3P51956 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC19.67■□□□□ 0.74
NEK3P51956 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC19.67■□□□□ 0.74
NEK3P51956 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
NEK3P51956 FAM83H-201ENST00000388913 5654 ntAPPRIS P1 TSL 5 BASIC19.67■□□□□ 0.74
NEK3P51956 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
NEK3P51956 MUTYH-203ENST00000372098 1839 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
NEK3P51956 MUTYH-204ENST00000372104 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
NEK3P51956 MUTYH-205ENST00000372110 1809 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
NEK3P51956 AL138781.2-201ENST00000617896 1843 ntBASIC19.67■□□□□ 0.74
NEK3P51956 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC19.67■□□□□ 0.74
NEK3P51956 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC19.67■□□□□ 0.74
NEK3P51956 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
NEK3P51956 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC19.66■□□□□ 0.74
NEK3P51956 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
NEK3P51956 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
NEK3P51956 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC19.66■□□□□ 0.74
NEK3P51956 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC19.66■□□□□ 0.74
NEK3P51956 ADAMTS19-205ENST00000638972 5089 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
NEK3P51956 OR10H2-201ENST00000305899 1041 ntAPPRIS P1 BASIC19.66■□□□□ 0.74
NEK3P51956 TSPY15P-201ENST00000457163 923 ntBASIC19.66■□□□□ 0.74
NEK3P51956 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC19.66■□□□□ 0.74
NEK3P51956 AC016582.3-201ENST00000589653 561 ntTSL 4 BASIC19.66■□□□□ 0.74
NEK3P51956 REXO1L12P-201ENST00000622156 912 ntBASIC19.66■□□□□ 0.74
NEK3P51956 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC19.66■□□□□ 0.74
NEK3P51956 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
NEK3P51956 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC19.66■□□□□ 0.74
NEK3P51956 MB21D2-201ENST00000392452 3368 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
NEK3P51956 ASB6-202ENST00000277459 2180 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
NEK3P51956 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
NEK3P51956 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
NEK3P51956 TRABD-201ENST00000303434 2329 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
NEK3P51956 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
NEK3P51956 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
NEK3P51956 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC19.65■□□□□ 0.74
NEK3P51956 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC19.65■□□□□ 0.74
NEK3P51956 PHOSPHO2-206ENST00000616481 1252 ntAPPRIS P1 TSL 3 BASIC19.65■□□□□ 0.74
NEK3P51956 PHOSPHO2-208ENST00000617738 1053 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
NEK3P51956 AL445675.2-201ENST00000620291 557 ntBASIC19.65■□□□□ 0.74
NEK3P51956 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
NEK3P51956 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
NEK3P51956 PTPN12-201ENST00000248594 3406 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
NEK3P51956 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
NEK3P51956 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
NEK3P51956 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC19.65■□□□□ 0.74
NEK3P51956 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
NEK3P51956 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC19.65■□□□□ 0.74
NEK3P51956 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC19.65■□□□□ 0.74
NEK3P51956 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
NEK3P51956 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC19.64■□□□□ 0.74
NEK3P51956 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC19.64■□□□□ 0.74
NEK3P51956 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC19.64■□□□□ 0.73
NEK3P51956 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC19.64■□□□□ 0.73
NEK3P51956 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
NEK3P51956 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
NEK3P51956 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
NEK3P51956 COL11A2-204ENST00000395194 1194 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
NEK3P51956 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC19.64■□□□□ 0.73
NEK3P51956 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC19.64■□□□□ 0.73
NEK3P51956 RPS20-210ENST00000523936 899 ntTSL 2 BASIC19.64■□□□□ 0.73
NEK3P51956 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC19.64■□□□□ 0.73
NEK3P51956 AC003005.1-201ENST00000601674 582 ntAPPRIS P5 TSL 2 BASIC19.64■□□□□ 0.73
NEK3P51956 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC19.64■□□□□ 0.73
NEK3P51956 FLT1-207ENST00000615840 6453 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
NEK3P51956 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC19.64■□□□□ 0.73
NEK3P51956 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.73
NEK3P51956 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
NEK3P51956 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC19.64■□□□□ 0.73
NEK3P51956 ADPGK-201ENST00000311669 2557 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.73
NEK3P51956 RNF146-201ENST00000309649 2624 ntAPPRIS P3 TSL 4 BASIC19.64■□□□□ 0.73
NEK3P51956 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC19.63■□□□□ 0.73
NEK3P51956 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC19.63■□□□□ 0.73
NEK3P51956 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
NEK3P51956 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
NEK3P51956 PHKA1-204ENST00000373545 6173 ntTSL 5 BASIC19.63■□□□□ 0.73
NEK3P51956 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC19.63■□□□□ 0.73
NEK3P51956 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
NEK3P51956 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
NEK3P51956 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC19.63■□□□□ 0.73
NEK3P51956 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
NEK3P51956 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
NEK3P51956 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
NEK3P51956 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC19.63■□□□□ 0.73
NEK3P51956 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
NEK3P51956 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
NEK3P51956 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
NEK3P51956 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC19.63■□□□□ 0.73
NEK3P51956 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC19.63■□□□□ 0.73
NEK3P51956 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
NEK3P51956 EIF2AK4-209ENST00000560648 687 ntTSL 3 BASIC19.63■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 34.9 ms