Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC18.51■□□□□ 0.55
HNF4AP41235 CACNA1B-203ENST00000371355 9647 ntAPPRIS ALT2 TSL 5 BASIC18.51■□□□□ 0.55
HNF4AP41235 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
HNF4AP41235 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC18.51■□□□□ 0.55
HNF4AP41235 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
HNF4AP41235 CHRNA4-207ENST00000615287 5643 ntTSL 5 BASIC18.5■□□□□ 0.55
HNF4AP41235 FP475955.4-201ENST00000623131 1990 ntBASIC18.5■□□□□ 0.55
HNF4AP41235 SLMAP-201ENST00000295951 5433 ntAPPRIS P1 TSL 5 BASIC18.5■□□□□ 0.55
HNF4AP41235 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
HNF4AP41235 ACOT8-201ENST00000217455 1168 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
HNF4AP41235 SMG1P1-207ENST00000446662 852 ntTSL 5 BASIC18.5■□□□□ 0.55
HNF4AP41235 SBF2-AS1-202ENST00000499953 854 ntTSL 5 BASIC18.5■□□□□ 0.55
HNF4AP41235 CNOT8-224ENST00000523698 862 ntTSL 2 BASIC18.5■□□□□ 0.55
HNF4AP41235 AC010336.4-201ENST00000595655 438 ntTSL 5 BASIC18.5■□□□□ 0.55
HNF4AP41235 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC18.5■□□□□ 0.55
HNF4AP41235 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
HNF4AP41235 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
HNF4AP41235 TMEM255B-202ENST00000375353 6100 ntAPPRIS P2 TSL 1 (best) BASIC18.5■□□□□ 0.55
HNF4AP41235 MYO9A-214ENST00000566885 5111 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
HNF4AP41235 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
HNF4AP41235 PRKCI-201ENST00000295797 4950 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
HNF4AP41235 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC18.5■□□□□ 0.55
HNF4AP41235 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC18.5■□□□□ 0.55
HNF4AP41235 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
HNF4AP41235 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
HNF4AP41235 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC18.5■□□□□ 0.55
HNF4AP41235 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
HNF4AP41235 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
HNF4AP41235 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
HNF4AP41235 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC18.5■□□□□ 0.55
HNF4AP41235 HCG11-201ENST00000411553 5696 ntBASIC18.49■□□□□ 0.55
HNF4AP41235 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC18.49■□□□□ 0.55
HNF4AP41235 CD82-201ENST00000227155 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
HNF4AP41235 IL1R1-205ENST00000410023 5143 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
HNF4AP41235 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC18.49■□□□□ 0.55
HNF4AP41235 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC18.49■□□□□ 0.55
HNF4AP41235 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC18.49■□□□□ 0.55
HNF4AP41235 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
HNF4AP41235 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
HNF4AP41235 RAB7A-201ENST00000265062 2244 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
HNF4AP41235 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
HNF4AP41235 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC18.49■□□□□ 0.55
HNF4AP41235 METTL5-206ENST00000409965 880 ntAPPRIS P2 TSL 1 (best) BASIC18.49■□□□□ 0.55
HNF4AP41235 SMIM19-201ENST00000414154 793 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
HNF4AP41235 PHYHD1-207ENST00000421063 1182 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
HNF4AP41235 TSPY21P-201ENST00000433481 731 ntBASIC18.49■□□□□ 0.55
HNF4AP41235 STK24-AS1-201ENST00000434547 1278 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
HNF4AP41235 UBE2SP1-201ENST00000450587 669 ntBASIC18.49■□□□□ 0.55
HNF4AP41235 LINC00636-201ENST00000494231 1264 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
HNF4AP41235 IAH1-215ENST00000497473 1266 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
HNF4AP41235 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC18.49■□□□□ 0.55
HNF4AP41235 FLT3LG-211ENST00000600429 984 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
HNF4AP41235 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
HNF4AP41235 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
HNF4AP41235 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
HNF4AP41235 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
HNF4AP41235 FMR1-207ENST00000439526 3699 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
HNF4AP41235 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
HNF4AP41235 SLC6A7-203ENST00000524041 2431 ntTSL 5 BASIC18.49■□□□□ 0.55
HNF4AP41235 LIPG-203ENST00000577628 2323 ntTSL 2 BASIC18.49■□□□□ 0.55
HNF4AP41235 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
HNF4AP41235 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC18.49■□□□□ 0.55
HNF4AP41235 TXNRD3-205ENST00000640797 1824 ntAPPRIS ALT2 TSL 2 BASIC18.49■□□□□ 0.55
HNF4AP41235 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC18.49■□□□□ 0.55
HNF4AP41235 IRS2-201ENST00000375856 8138 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
HNF4AP41235 OTOP3-201ENST00000328801 2363 ntAPPRIS P1 TSL 2 BASIC18.48■□□□□ 0.55
HNF4AP41235 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
HNF4AP41235 ANKRD65-201ENST00000427211 1976 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
HNF4AP41235 HCN4-201ENST00000261917 7228 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
HNF4AP41235 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC18.48■□□□□ 0.55
HNF4AP41235 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
HNF4AP41235 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC18.48■□□□□ 0.55
HNF4AP41235 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
HNF4AP41235 LGALS7B-201ENST00000314980 483 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
HNF4AP41235 AP002982.1-201ENST00000492365 877 ntBASIC18.48■□□□□ 0.55
HNF4AP41235 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC18.48■□□□□ 0.55
HNF4AP41235 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC18.48■□□□□ 0.55
HNF4AP41235 ZNF394-203ENST00000426306 2017 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
HNF4AP41235 IRX1P1-201ENST00000438849 1838 ntBASIC18.48■□□□□ 0.55
HNF4AP41235 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC18.48■□□□□ 0.55
HNF4AP41235 MBIP-203ENST00000416007 1648 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
HNF4AP41235 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
HNF4AP41235 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC18.48■□□□□ 0.55
HNF4AP41235 ABCC6-209ENST00000640696 1893 ntTSL 5 BASIC18.48■□□□□ 0.55
HNF4AP41235 C21orf58-205ENST00000397683 1674 ntAPPRIS ALT2 TSL 2 BASIC18.47■□□□□ 0.55
HNF4AP41235 MYC-201ENST00000259523 2042 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
HNF4AP41235 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
HNF4AP41235 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
HNF4AP41235 PSPC1-206ENST00000619300 2013 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
HNF4AP41235 TSPAN4-204ENST00000397404 1462 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
HNF4AP41235 IL6R-208ENST00000622330 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
HNF4AP41235 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
HNF4AP41235 RBL2-201ENST00000262133 4906 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
HNF4AP41235 PCDHAC2-201ENST00000289269 5963 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
HNF4AP41235 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC18.47■□□□□ 0.55
HNF4AP41235 FEM1AP3-201ENST00000403722 1741 ntBASIC18.47■□□□□ 0.55
HNF4AP41235 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
HNF4AP41235 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
HNF4AP41235 ATP5D-201ENST00000215375 997 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
HNF4AP41235 CMTM8-201ENST00000307526 1174 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 33.5 ms