Protein–RNA interactions for Protein: O00257

CBX4, E3 SUMO-protein ligase CBX4, humanhuman

Predictions only

Length 560 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4O00257 RTBDN-202ENST00000393233 1000 ntAPPRIS ALT2 TSL 3 BASIC19.51■□□□□ 0.71
CBX4O00257 TSPY21P-201ENST00000433481 731 ntBASIC19.51■□□□□ 0.71
CBX4O00257 ST20-202ENST00000485386 529 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
CBX4O00257 AC010947.1-201ENST00000623454 693 ntBASIC19.51■□□□□ 0.71
CBX4O00257 LGALS9-202ENST00000313648 1378 ntTSL 3 BASIC19.51■□□□□ 0.71
CBX4O00257 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
CBX4O00257 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC19.51■□□□□ 0.71
CBX4O00257 MYEOV-202ENST00000441339 1996 ntAPPRIS P3 TSL 2 BASIC19.51■□□□□ 0.71
CBX4O00257 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
CBX4O00257 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
CBX4O00257 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC19.51■□□□□ 0.71
CBX4O00257 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
CBX4O00257 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
CBX4O00257 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC19.51■□□□□ 0.71
CBX4O00257 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
CBX4O00257 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
CBX4O00257 SYT15-205ENST00000503753 1331 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
CBX4O00257 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC19.5■□□□□ 0.71
CBX4O00257 CADPS2-208ENST00000615869 6066 ntAPPRIS ALT1 TSL 5 BASIC19.5■□□□□ 0.71
CBX4O00257 PCCB-208ENST00000468777 1877 ntAPPRIS ALT2 TSL 3 BASIC19.5■□□□□ 0.71
CBX4O00257 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC19.5■□□□□ 0.71
CBX4O00257 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC19.5■□□□□ 0.71
CBX4O00257 AC124066.1-201ENST00000581122 1660 ntTSL 5 BASIC19.5■□□□□ 0.71
CBX4O00257 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
CBX4O00257 ACAA1-209ENST00000450296 1570 ntTSL 5 BASIC19.5■□□□□ 0.71
CBX4O00257 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC19.5■□□□□ 0.71
CBX4O00257 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
CBX4O00257 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
CBX4O00257 MLF2-210ENST00000542154 838 ntAPPRIS P1 TSL 5 BASIC19.5■□□□□ 0.71
CBX4O00257 TRAPPC6A-201ENST00000006275 805 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
CBX4O00257 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
CBX4O00257 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC19.5■□□□□ 0.71
CBX4O00257 AL032819.2-201ENST00000624543 2162 ntBASIC19.5■□□□□ 0.71
CBX4O00257 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
CBX4O00257 PLIN2-201ENST00000276914 1972 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
CBX4O00257 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
CBX4O00257 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
CBX4O00257 RIMBP3C-201ENST00000331505 5475 ntAPPRIS ALT2 BASIC19.49■□□□□ 0.71
CBX4O00257 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC19.49■□□□□ 0.71
CBX4O00257 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CBX4O00257 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
CBX4O00257 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC19.49■□□□□ 0.71
CBX4O00257 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC19.49■□□□□ 0.71
CBX4O00257 LINC01568-207ENST00000641790 1380 ntBASIC19.49■□□□□ 0.71
CBX4O00257 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CBX4O00257 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC19.49■□□□□ 0.71
CBX4O00257 ARMC10P1-201ENST00000313754 855 ntBASIC19.49■□□□□ 0.71
CBX4O00257 ICAM4-201ENST00000340992 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
CBX4O00257 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC19.49■□□□□ 0.71
CBX4O00257 ABHD11-207ENST00000458339 890 ntTSL 3 BASIC19.49■□□□□ 0.71
CBX4O00257 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC19.49■□□□□ 0.71
CBX4O00257 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CBX4O00257 FAM118A-202ENST00000405673 1612 ntTSL 5 BASIC19.49■□□□□ 0.71
CBX4O00257 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC19.49■□□□□ 0.71
CBX4O00257 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
CBX4O00257 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC19.49■□□□□ 0.71
CBX4O00257 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CBX4O00257 AKIRIN2-201ENST00000257787 1662 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CBX4O00257 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC19.48■□□□□ 0.71
CBX4O00257 DCBLD2-201ENST00000326840 6122 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CBX4O00257 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CBX4O00257 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CBX4O00257 ANGPTL4-201ENST00000301455 1879 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CBX4O00257 SLC34A3-201ENST00000361134 2124 ntAPPRIS P1 TSL 2 BASIC19.48■□□□□ 0.71
CBX4O00257 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CBX4O00257 HIST1H2APS4-201ENST00000362070 348 ntBASIC19.48■□□□□ 0.71
CBX4O00257 RHOC-204ENST00000369633 1295 ntAPPRIS P1 TSL 3 BASIC19.48■□□□□ 0.71
CBX4O00257 AP001059.1-201ENST00000442785 523 ntTSL 3 BASIC19.48■□□□□ 0.71
CBX4O00257 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
CBX4O00257 SIGLEC15-202ENST00000546268 1054 ntTSL 2 BASIC19.48■□□□□ 0.71
CBX4O00257 ASRGL1-211ENST00000628829 1161 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
CBX4O00257 TEX21P-204ENST00000641479 1693 ntBASIC19.48■□□□□ 0.71
CBX4O00257 AKIP1-207ENST00000529876 1421 ntTSL 2 BASIC19.48■□□□□ 0.71
CBX4O00257 GOLGA6L5P-202ENST00000515341 1828 ntBASIC19.48■□□□□ 0.71
CBX4O00257 P3H4-202ENST00000393928 2601 ntAPPRIS P2 TSL 1 (best) BASIC19.48■□□□□ 0.71
CBX4O00257 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CBX4O00257 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CBX4O00257 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CBX4O00257 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CBX4O00257 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC19.47■□□□□ 0.71
CBX4O00257 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
CBX4O00257 RABEPK-202ENST00000373538 1504 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CBX4O00257 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC19.47■□□□□ 0.71
CBX4O00257 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CBX4O00257 AGPAT5-201ENST00000285518 3685 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CBX4O00257 MARC2-202ENST00000366913 2134 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CBX4O00257 AL139246.2-201ENST00000456687 1297 ntTSL 5 BASIC19.47■□□□□ 0.71
CBX4O00257 AZIN1-AS1-215ENST00000522939 644 ntTSL 2 BASIC19.47■□□□□ 0.71
CBX4O00257 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC19.47■□□□□ 0.71
CBX4O00257 ETS1-207ENST00000531611 2134 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
CBX4O00257 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CBX4O00257 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC19.47■□□□□ 0.71
CBX4O00257 DEDD2-209ENST00000598727 1037 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
CBX4O00257 AC006942.1-201ENST00000600669 520 ntTSL 2 BASIC19.47■□□□□ 0.71
CBX4O00257 MYH14-208ENST00000598205 6137 ntAPPRIS P3 TSL 5 BASIC19.47■□□□□ 0.71
CBX4O00257 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC19.47■□□□□ 0.71
CBX4O00257 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC19.47■□□□□ 0.71
CBX4O00257 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CBX4O00257 UBE2E3-209ENST00000602710 1556 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CBX4O00257 HCK-206ENST00000518730 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 19.7 ms