Protein–RNA interactions for Protein: A6NDI0

TRIM49B, Putative tripartite motif-containing protein 49B, humanhuman

Predictions only

Length 452 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM49BA6NDI0 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
TRIM49BA6NDI0 TPPP3-204ENST00000562206 1410 ntAPPRIS P1 TSL 2 BASIC21.04■□□□□ 0.96
TRIM49BA6NDI0 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC21.04■□□□□ 0.96
TRIM49BA6NDI0 KRT8P41-201ENST00000533985 1514 ntBASIC21.04■□□□□ 0.96
TRIM49BA6NDI0 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC21.04■□□□□ 0.96
TRIM49BA6NDI0 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC21.04■□□□□ 0.96
TRIM49BA6NDI0 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC21.04■□□□□ 0.96
TRIM49BA6NDI0 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC21.04■□□□□ 0.96
TRIM49BA6NDI0 LINC00636-201ENST00000494231 1264 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
TRIM49BA6NDI0 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
TRIM49BA6NDI0 AC006058.3-201ENST00000606217 1069 ntBASIC21.04■□□□□ 0.96
TRIM49BA6NDI0 GPS2-201ENST00000380728 1379 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
TRIM49BA6NDI0 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC21.04■□□□□ 0.96
TRIM49BA6NDI0 GAS2L1P1-201ENST00000420145 1480 ntBASIC21.04■□□□□ 0.96
TRIM49BA6NDI0 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC21.04■□□□□ 0.96
TRIM49BA6NDI0 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC21.04■□□□□ 0.96
TRIM49BA6NDI0 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC21.04■□□□□ 0.96
TRIM49BA6NDI0 PALM3-201ENST00000340790 2262 ntAPPRIS P2 TSL 5 BASIC21.04■□□□□ 0.96
TRIM49BA6NDI0 TTLL10-203ENST00000379290 2283 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
TRIM49BA6NDI0 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
TRIM49BA6NDI0 KANSL1L-203ENST00000418791 3562 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
TRIM49BA6NDI0 ATP1B1-202ENST00000367816 2608 ntAPPRIS P1 TSL 5 BASIC21.04■□□□□ 0.96
TRIM49BA6NDI0 CYP2F1-201ENST00000331105 1720 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
TRIM49BA6NDI0 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
TRIM49BA6NDI0 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
TRIM49BA6NDI0 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
TRIM49BA6NDI0 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC21.03■□□□□ 0.96
TRIM49BA6NDI0 AC093525.10-201ENST00000625130 1569 ntBASIC21.03■□□□□ 0.96
TRIM49BA6NDI0 PARS2-201ENST00000371279 2347 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
TRIM49BA6NDI0 IGFBP4-201ENST00000269593 2200 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
TRIM49BA6NDI0 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
TRIM49BA6NDI0 GUK1-201ENST00000312726 1084 ntAPPRIS P3 TSL 1 (best) BASIC21.03■□□□□ 0.96
TRIM49BA6NDI0 NUDT8-202ENST00000376693 728 ntAPPRIS ALT2 TSL 2 BASIC21.03■□□□□ 0.96
TRIM49BA6NDI0 AC137630.1-201ENST00000452042 782 ntTSL 4 BASIC21.03■□□□□ 0.96
TRIM49BA6NDI0 KRT16P5-201ENST00000455284 522 ntBASIC21.03■□□□□ 0.96
TRIM49BA6NDI0 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC21.03■□□□□ 0.96
TRIM49BA6NDI0 FBXO17-202ENST00000595329 1299 ntAPPRIS P1 TSL 2 BASIC21.03■□□□□ 0.96
TRIM49BA6NDI0 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC21.03■□□□□ 0.96
TRIM49BA6NDI0 ADD3-AS1-204ENST00000627565 388 ntTSL 3 BASIC21.03■□□□□ 0.96
TRIM49BA6NDI0 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
TRIM49BA6NDI0 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
TRIM49BA6NDI0 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
TRIM49BA6NDI0 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
TRIM49BA6NDI0 WIZP1-201ENST00000531444 2299 ntBASIC21.03■□□□□ 0.96
TRIM49BA6NDI0 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
TRIM49BA6NDI0 RABEPK-202ENST00000373538 1504 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
TRIM49BA6NDI0 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
TRIM49BA6NDI0 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
TRIM49BA6NDI0 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC21.02■□□□□ 0.96
TRIM49BA6NDI0 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC21.02■□□□□ 0.96
TRIM49BA6NDI0 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
TRIM49BA6NDI0 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
TRIM49BA6NDI0 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC21.02■□□□□ 0.96
TRIM49BA6NDI0 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC21.02■□□□□ 0.96
TRIM49BA6NDI0 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC21.02■□□□□ 0.96
TRIM49BA6NDI0 NMRK1-201ENST00000361092 1185 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
TRIM49BA6NDI0 PMF1-BGLAP-202ENST00000368276 852 ntTSL 3 BASIC21.02■□□□□ 0.96
TRIM49BA6NDI0 TRA2B-203ENST00000382191 976 ntTSL 2 BASIC21.02■□□□□ 0.96
TRIM49BA6NDI0 OPA3-203ENST00000544371 1146 ntTSL 2 BASIC21.02■□□□□ 0.96
TRIM49BA6NDI0 RN7SL471P-201ENST00000580476 299 ntBASIC21.02■□□□□ 0.96
TRIM49BA6NDI0 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
TRIM49BA6NDI0 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC21.02■□□□□ 0.96
TRIM49BA6NDI0 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC21.02■□□□□ 0.96
TRIM49BA6NDI0 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC21.02■□□□□ 0.95
TRIM49BA6NDI0 AD000671.2-201ENST00000589807 1925 ntAPPRIS P1 TSL 2 BASIC21.02■□□□□ 0.95
TRIM49BA6NDI0 TRIM73-202ENST00000430211 1321 ntAPPRIS ALT2 TSL 2 BASIC21.02■□□□□ 0.95
TRIM49BA6NDI0 GRM2-204ENST00000442933 2064 ntTSL 5 BASIC21.01■□□□□ 0.95
TRIM49BA6NDI0 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
TRIM49BA6NDI0 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
TRIM49BA6NDI0 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC21.01■□□□□ 0.95
TRIM49BA6NDI0 ANXA8L1-203ENST00000613703 1874 ntTSL 2 BASIC21.01■□□□□ 0.95
TRIM49BA6NDI0 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC21.01■□□□□ 0.95
TRIM49BA6NDI0 AC007405.3-201ENST00000429172 561 ntTSL 3 BASIC21.01■□□□□ 0.95
TRIM49BA6NDI0 RTBDN-203ENST00000458671 1066 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
TRIM49BA6NDI0 Z85996.1-201ENST00000494644 937 ntBASIC21.01■□□□□ 0.95
TRIM49BA6NDI0 CD24-208ENST00000622315 825 ntAPPRIS ALT2 TSL 2 BASIC21.01■□□□□ 0.95
TRIM49BA6NDI0 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC21.01■□□□□ 0.95
TRIM49BA6NDI0 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
TRIM49BA6NDI0 INSR-201ENST00000302850 4721 ntAPPRIS P3 TSL 1 (best) BASIC21.01■□□□□ 0.95
TRIM49BA6NDI0 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC21.01■□□□□ 0.95
TRIM49BA6NDI0 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC21.01■□□□□ 0.95
TRIM49BA6NDI0 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC21.01■□□□□ 0.95
TRIM49BA6NDI0 RAPGEF5-203ENST00000405243 2800 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
TRIM49BA6NDI0 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC21.01■□□□□ 0.95
TRIM49BA6NDI0 FAM90A1-201ENST00000307435 2342 ntAPPRIS P1 TSL 2 BASIC21.01■□□□□ 0.95
TRIM49BA6NDI0 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
TRIM49BA6NDI0 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
TRIM49BA6NDI0 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
TRIM49BA6NDI0 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
TRIM49BA6NDI0 ANKRD13D-201ENST00000308440 2219 ntTSL 2 BASIC21.01■□□□□ 0.95
TRIM49BA6NDI0 RNF146-201ENST00000309649 2624 ntAPPRIS P3 TSL 4 BASIC21.01■□□□□ 0.95
TRIM49BA6NDI0 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
TRIM49BA6NDI0 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC21.01■□□□□ 0.95
TRIM49BA6NDI0 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC21.01■□□□□ 0.95
TRIM49BA6NDI0 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
TRIM49BA6NDI0 GJB6-204ENST00000400066 1927 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
TRIM49BA6NDI0 SYT7-209ENST00000542836 1362 ntTSL 5 BASIC21■□□□□ 0.95
TRIM49BA6NDI0 BAIAP2-204ENST00000428708 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
TRIM49BA6NDI0 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
TRIM49BA6NDI0 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 21.9 ms