Protein–RNA interactions for Protein: Q9Y5E6

PCDHB3, Protocadherin beta-3, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHB3Q9Y5E6 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC18.71■□□□□ 0.59
PCDHB3Q9Y5E6 NRM-203ENST00000376421 1734 ntAPPRIS P2 TSL 1 (best) BASIC18.71■□□□□ 0.59
PCDHB3Q9Y5E6 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC18.71■□□□□ 0.59
PCDHB3Q9Y5E6 FAM198A-202ENST00000430121 3121 ntAPPRIS P2 TSL 5 BASIC18.71■□□□□ 0.59
PCDHB3Q9Y5E6 HEMK1-206ENST00000455834 1499 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.59
PCDHB3Q9Y5E6 EI24-201ENST00000278903 2455 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.58
PCDHB3Q9Y5E6 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
PCDHB3Q9Y5E6 GJB6-204ENST00000400066 1927 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
PCDHB3Q9Y5E6 LINC01465-201ENST00000408887 1940 ntBASIC18.7■□□□□ 0.58
PCDHB3Q9Y5E6 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC18.7■□□□□ 0.58
PCDHB3Q9Y5E6 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC18.7■□□□□ 0.58
PCDHB3Q9Y5E6 CAMKK2-206ENST00000402834 2051 ntAPPRIS P4 TSL 1 (best) BASIC18.7■□□□□ 0.58
PCDHB3Q9Y5E6 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC18.7■□□□□ 0.58
PCDHB3Q9Y5E6 FAM3A-203ENST00000369641 1359 ntTSL 5 BASIC18.7■□□□□ 0.58
PCDHB3Q9Y5E6 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
PCDHB3Q9Y5E6 UNC93B2-201ENST00000285383 730 ntBASIC18.7■□□□□ 0.58
PCDHB3Q9Y5E6 PML-204ENST00000359928 1726 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
PCDHB3Q9Y5E6 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC18.7■□□□□ 0.58
PCDHB3Q9Y5E6 LINC00636-201ENST00000494231 1264 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
PCDHB3Q9Y5E6 NUDT16P1-203ENST00000513809 620 ntBASIC18.7■□□□□ 0.58
PCDHB3Q9Y5E6 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC18.7■□□□□ 0.58
PCDHB3Q9Y5E6 HLX-AS1-201ENST00000552026 563 ntTSL 4 BASIC18.7■□□□□ 0.58
PCDHB3Q9Y5E6 AC016582.3-201ENST00000589653 561 ntTSL 4 BASIC18.7■□□□□ 0.58
PCDHB3Q9Y5E6 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
PCDHB3Q9Y5E6 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
PCDHB3Q9Y5E6 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC18.7■□□□□ 0.58
PCDHB3Q9Y5E6 ABCB9-202ENST00000344275 2394 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
PCDHB3Q9Y5E6 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
PCDHB3Q9Y5E6 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
PCDHB3Q9Y5E6 ADGRD2-201ENST00000334810 3244 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
PCDHB3Q9Y5E6 DUT-201ENST00000331200 2147 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
PCDHB3Q9Y5E6 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
PCDHB3Q9Y5E6 CA11-201ENST00000084798 1844 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
PCDHB3Q9Y5E6 P2RY6-210ENST00000542092 1674 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
PCDHB3Q9Y5E6 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
PCDHB3Q9Y5E6 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
PCDHB3Q9Y5E6 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
PCDHB3Q9Y5E6 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC18.69■□□□□ 0.58
PCDHB3Q9Y5E6 APTR-204ENST00000440088 2029 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
PCDHB3Q9Y5E6 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC18.69■□□□□ 0.58
PCDHB3Q9Y5E6 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
PCDHB3Q9Y5E6 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
PCDHB3Q9Y5E6 MORC4-201ENST00000255495 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
PCDHB3Q9Y5E6 FAM99A-201ENST00000382167 1432 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
PCDHB3Q9Y5E6 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
PCDHB3Q9Y5E6 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC18.69■□□□□ 0.58
PCDHB3Q9Y5E6 CLDND2-201ENST00000291715 974 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
PCDHB3Q9Y5E6 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
PCDHB3Q9Y5E6 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC18.69■□□□□ 0.58
PCDHB3Q9Y5E6 RCN1P1-201ENST00000400413 996 ntBASIC18.69■□□□□ 0.58
PCDHB3Q9Y5E6 TMPOP1-202ENST00000424642 1267 ntBASIC18.69■□□□□ 0.58
PCDHB3Q9Y5E6 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC18.69■□□□□ 0.58
PCDHB3Q9Y5E6 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC18.69■□□□□ 0.58
PCDHB3Q9Y5E6 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
PCDHB3Q9Y5E6 MLF2-210ENST00000542154 838 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
PCDHB3Q9Y5E6 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC18.69■□□□□ 0.58
PCDHB3Q9Y5E6 C1QL1P1-201ENST00000568105 661 ntBASIC18.69■□□□□ 0.58
PCDHB3Q9Y5E6 AC126696.3-202ENST00000570159 553 ntTSL 5 BASIC18.69■□□□□ 0.58
PCDHB3Q9Y5E6 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC18.69■□□□□ 0.58
PCDHB3Q9Y5E6 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC18.69■□□□□ 0.58
PCDHB3Q9Y5E6 CROCCP2-205ENST00000639481 1296 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
PCDHB3Q9Y5E6 BLACE-201ENST00000378120 2456 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
PCDHB3Q9Y5E6 POU3F2-201ENST00000328345 4879 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
PCDHB3Q9Y5E6 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
PCDHB3Q9Y5E6 LINC02361-201ENST00000538731 1484 ntTSL 2 BASIC18.69■□□□□ 0.58
PCDHB3Q9Y5E6 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
PCDHB3Q9Y5E6 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC18.69■□□□□ 0.58
PCDHB3Q9Y5E6 ART5-203ENST00000397068 1504 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
PCDHB3Q9Y5E6 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC18.69■□□□□ 0.58
PCDHB3Q9Y5E6 EPOR-208ENST00000592375 2086 ntTSL 2 BASIC18.69■□□□□ 0.58
PCDHB3Q9Y5E6 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
PCDHB3Q9Y5E6 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
PCDHB3Q9Y5E6 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
PCDHB3Q9Y5E6 HERPUD2-201ENST00000311350 2474 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
PCDHB3Q9Y5E6 SLC25A15-201ENST00000338625 1586 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
PCDHB3Q9Y5E6 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC18.68■□□□□ 0.58
PCDHB3Q9Y5E6 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC18.68■□□□□ 0.58
PCDHB3Q9Y5E6 KRT16P1-201ENST00000399124 1418 ntBASIC18.68■□□□□ 0.58
PCDHB3Q9Y5E6 MARCH8-201ENST00000319836 5272 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
PCDHB3Q9Y5E6 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
PCDHB3Q9Y5E6 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC18.68■□□□□ 0.58
PCDHB3Q9Y5E6 PCCA-201ENST00000376279 2418 ntTSL 2 BASIC18.68■□□□□ 0.58
PCDHB3Q9Y5E6 NDUFB10-201ENST00000268668 705 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
PCDHB3Q9Y5E6 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
PCDHB3Q9Y5E6 STX6-204ENST00000542060 4809 ntTSL 2 BASIC18.68■□□□□ 0.58
PCDHB3Q9Y5E6 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
PCDHB3Q9Y5E6 ROR1-201ENST00000371079 5832 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
PCDHB3Q9Y5E6 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
PCDHB3Q9Y5E6 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
PCDHB3Q9Y5E6 TTC19-201ENST00000261647 3002 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
PCDHB3Q9Y5E6 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC18.68■□□□□ 0.58
PCDHB3Q9Y5E6 SLC27A3-204ENST00000368661 2410 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
PCDHB3Q9Y5E6 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC18.68■□□□□ 0.58
PCDHB3Q9Y5E6 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
PCDHB3Q9Y5E6 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC18.67■□□□□ 0.58
PCDHB3Q9Y5E6 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC18.67■□□□□ 0.58
PCDHB3Q9Y5E6 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
PCDHB3Q9Y5E6 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
PCDHB3Q9Y5E6 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
PCDHB3Q9Y5E6 FAM189B-204ENST00000368368 2609 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 22.6 ms