Protein–RNA interactions for Protein: Q99727

TIMP4, Metalloproteinase inhibitor 4, humanhuman

Predictions only

Length 224 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TIMP4Q99727 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC17.53■□□□□ 0.4
TIMP4Q99727 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
TIMP4Q99727 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC17.53■□□□□ 0.4
TIMP4Q99727 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
TIMP4Q99727 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
TIMP4Q99727 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC17.53■□□□□ 0.4
TIMP4Q99727 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC17.53■□□□□ 0.4
TIMP4Q99727 AC026271.3-201ENST00000571884 352 ntBASIC17.53■□□□□ 0.4
TIMP4Q99727 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC17.53■□□□□ 0.4
TIMP4Q99727 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC17.53■□□□□ 0.4
TIMP4Q99727 HLA-A-209ENST00000638375 975 ntBASIC17.53■□□□□ 0.4
TIMP4Q99727 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC17.53■□□□□ 0.4
TIMP4Q99727 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
TIMP4Q99727 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
TIMP4Q99727 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
TIMP4Q99727 ASB6-202ENST00000277459 2180 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
TIMP4Q99727 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC17.53■□□□□ 0.4
TIMP4Q99727 NPIPA8-201ENST00000525596 1565 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
TIMP4Q99727 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
TIMP4Q99727 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC17.53■□□□□ 0.4
TIMP4Q99727 TPSB2-203ENST00000612142 1352 ntAPPRIS P5 TSL 1 (best) BASIC17.53■□□□□ 0.4
TIMP4Q99727 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
TIMP4Q99727 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
TIMP4Q99727 DACT2-204ENST00000610183 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
TIMP4Q99727 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC17.52■□□□□ 0.4
TIMP4Q99727 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
TIMP4Q99727 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
TIMP4Q99727 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
TIMP4Q99727 ISLR2-202ENST00000419208 2306 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
TIMP4Q99727 CAPN10-203ENST00000352879 862 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
TIMP4Q99727 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.4
TIMP4Q99727 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
TIMP4Q99727 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC17.52■□□□□ 0.4
TIMP4Q99727 AQP12B-201ENST00000407834 1094 ntAPPRIS P2 TSL 1 (best) BASIC17.52■□□□□ 0.4
TIMP4Q99727 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
TIMP4Q99727 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC17.52■□□□□ 0.4
TIMP4Q99727 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC17.52■□□□□ 0.4
TIMP4Q99727 AC012306.2-201ENST00000609350 630 ntBASIC17.52■□□□□ 0.4
TIMP4Q99727 MIR6786-201ENST00000616843 113 ntBASIC17.52■□□□□ 0.4
TIMP4Q99727 AC097493.4-201ENST00000641197 219 ntBASIC17.52■□□□□ 0.4
TIMP4Q99727 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC17.52■□□□□ 0.4
TIMP4Q99727 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC17.52■□□□□ 0.4
TIMP4Q99727 ESYT2-201ENST00000251527 5960 ntAPPRIS P2 TSL 1 (best) BASIC17.52■□□□□ 0.4
TIMP4Q99727 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC17.52■□□□□ 0.4
TIMP4Q99727 MICU2-201ENST00000382374 1920 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
TIMP4Q99727 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC17.52■□□□□ 0.39
TIMP4Q99727 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
TIMP4Q99727 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC17.52■□□□□ 0.39
TIMP4Q99727 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC17.52■□□□□ 0.39
TIMP4Q99727 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC17.52■□□□□ 0.39
TIMP4Q99727 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC17.52■□□□□ 0.39
TIMP4Q99727 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
TIMP4Q99727 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
TIMP4Q99727 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
TIMP4Q99727 CHMP6-201ENST00000325167 1664 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
TIMP4Q99727 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC17.52■□□□□ 0.39
TIMP4Q99727 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
TIMP4Q99727 BLOC1S3-201ENST00000433642 2601 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
TIMP4Q99727 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC17.51■□□□□ 0.39
TIMP4Q99727 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
TIMP4Q99727 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC17.51■□□□□ 0.39
TIMP4Q99727 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC17.51■□□□□ 0.39
TIMP4Q99727 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
TIMP4Q99727 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
TIMP4Q99727 BCAP29-202ENST00000379117 1946 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
TIMP4Q99727 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC17.51■□□□□ 0.39
TIMP4Q99727 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
TIMP4Q99727 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
TIMP4Q99727 WNT1-201ENST00000293549 1185 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
TIMP4Q99727 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
TIMP4Q99727 MESTP1-201ENST00000404287 994 ntBASIC17.51■□□□□ 0.39
TIMP4Q99727 MIR1238-201ENST00000408483 83 ntBASIC17.51■□□□□ 0.39
TIMP4Q99727 AMACR-206ENST00000502637 1598 ntTSL 5 BASIC17.51■□□□□ 0.39
TIMP4Q99727 ZNF623-203ENST00000526926 2612 ntAPPRIS ALT2 TSL 2 BASIC17.51■□□□□ 0.39
TIMP4Q99727 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
TIMP4Q99727 AMN1-211ENST00000541931 880 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
TIMP4Q99727 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC17.51■□□□□ 0.39
TIMP4Q99727 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC17.51■□□□□ 0.39
TIMP4Q99727 GLDC-219ENST00000640208 420 ntTSL 2 BASIC17.51■□□□□ 0.39
TIMP4Q99727 CDC42BPB-201ENST00000361246 6758 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
TIMP4Q99727 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
TIMP4Q99727 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
TIMP4Q99727 AL138781.2-201ENST00000617896 1843 ntBASIC17.51■□□□□ 0.39
TIMP4Q99727 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
TIMP4Q99727 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
TIMP4Q99727 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
TIMP4Q99727 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC17.5■□□□□ 0.39
TIMP4Q99727 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC17.5■□□□□ 0.39
TIMP4Q99727 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
TIMP4Q99727 PLCXD1-202ENST00000381663 1863 ntAPPRIS P2 TSL 5 BASIC17.5■□□□□ 0.39
TIMP4Q99727 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
TIMP4Q99727 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
TIMP4Q99727 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC17.5■□□□□ 0.39
TIMP4Q99727 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
TIMP4Q99727 MPC2-201ENST00000271373 798 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
TIMP4Q99727 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
TIMP4Q99727 AC011506.1-201ENST00000474329 610 ntBASIC17.5■□□□□ 0.39
TIMP4Q99727 NME1-207ENST00000480143 964 ntTSL 2 BASIC17.5■□□□□ 0.39
TIMP4Q99727 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
TIMP4Q99727 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC17.5■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 24.3 ms