Protein–RNA interactions for Protein: Q8IV63

VRK3, Inactive serine/threonine-protein kinase VRK3, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3Q8IV63 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC18.71■□□□□ 0.59
VRK3Q8IV63 PLPBP-201ENST00000328195 2558 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
VRK3Q8IV63 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
VRK3Q8IV63 SIGLEC14-201ENST00000360844 2035 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
VRK3Q8IV63 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC18.71■□□□□ 0.59
VRK3Q8IV63 ATXN7L2-202ENST00000369870 2318 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.58
VRK3Q8IV63 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC18.71■□□□□ 0.58
VRK3Q8IV63 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC18.71■□□□□ 0.58
VRK3Q8IV63 GAS6-201ENST00000327773 2490 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.58
VRK3Q8IV63 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC18.7■□□□□ 0.58
VRK3Q8IV63 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
VRK3Q8IV63 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC18.7■□□□□ 0.58
VRK3Q8IV63 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC18.7■□□□□ 0.58
VRK3Q8IV63 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
VRK3Q8IV63 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
VRK3Q8IV63 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC18.7■□□□□ 0.58
VRK3Q8IV63 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
VRK3Q8IV63 ITGBL1-202ENST00000376180 2494 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
VRK3Q8IV63 CYP2D7-203ENST00000433992 1740 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
VRK3Q8IV63 FAM207BP-201ENST00000447172 505 ntBASIC18.7■□□□□ 0.58
VRK3Q8IV63 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
VRK3Q8IV63 TMEM263-208ENST00000551489 621 ntTSL 4 BASIC18.7■□□□□ 0.58
VRK3Q8IV63 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC18.7■□□□□ 0.58
VRK3Q8IV63 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC18.7■□□□□ 0.58
VRK3Q8IV63 CYP2D7-207ENST00000612115 1734 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
VRK3Q8IV63 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
VRK3Q8IV63 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC18.7■□□□□ 0.58
VRK3Q8IV63 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC18.7■□□□□ 0.58
VRK3Q8IV63 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
VRK3Q8IV63 FBLN1-201ENST00000262722 2251 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
VRK3Q8IV63 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
VRK3Q8IV63 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
VRK3Q8IV63 KLHL14-201ENST00000358095 1884 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
VRK3Q8IV63 CYP2F1-201ENST00000331105 1720 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
VRK3Q8IV63 FEM1AP3-201ENST00000403722 1741 ntBASIC18.69■□□□□ 0.58
VRK3Q8IV63 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
VRK3Q8IV63 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
VRK3Q8IV63 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC18.69■□□□□ 0.58
VRK3Q8IV63 DHDH-203ENST00000522614 776 ntTSL 5 BASIC18.69■□□□□ 0.58
VRK3Q8IV63 SLC39A13-212ENST00000531974 856 ntTSL 2 BASIC18.69■□□□□ 0.58
VRK3Q8IV63 KCTD10-211ENST00000540411 866 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
VRK3Q8IV63 TMEM263-203ENST00000547242 811 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
VRK3Q8IV63 AL355075.4-201ENST00000554988 638 ntBASIC18.69■□□□□ 0.58
VRK3Q8IV63 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC18.69■□□□□ 0.58
VRK3Q8IV63 AC122129.2-201ENST00000583598 466 ntTSL 5 BASIC18.69■□□□□ 0.58
VRK3Q8IV63 MIR4785-201ENST00000585005 73 ntBASIC18.69■□□□□ 0.58
VRK3Q8IV63 AP000692.2-201ENST00000608391 879 ntBASIC18.69■□□□□ 0.58
VRK3Q8IV63 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
VRK3Q8IV63 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
VRK3Q8IV63 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
VRK3Q8IV63 MYC-205ENST00000524013 2150 ntAPPRIS ALT1 TSL 1 (best) BASIC18.69■□□□□ 0.58
VRK3Q8IV63 TCP11-204ENST00000373979 1882 ntAPPRIS P3 TSL 5 BASIC18.69■□□□□ 0.58
VRK3Q8IV63 GPR137-204ENST00000438980 1596 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
VRK3Q8IV63 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
VRK3Q8IV63 DRD5-201ENST00000304374 2330 ntAPPRIS P1 BASIC18.68■□□□□ 0.58
VRK3Q8IV63 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
VRK3Q8IV63 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
VRK3Q8IV63 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
VRK3Q8IV63 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
VRK3Q8IV63 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
VRK3Q8IV63 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC18.68■□□□□ 0.58
VRK3Q8IV63 KIAA1522-201ENST00000294521 878 ntAPPRIS ALT2 TSL 2 BASIC18.68■□□□□ 0.58
VRK3Q8IV63 MDK-201ENST00000359803 985 ntAPPRIS P2 TSL 2 BASIC18.68■□□□□ 0.58
VRK3Q8IV63 HLA-DRB1-201ENST00000360004 1229 ntAPPRIS P1 BASIC18.68■□□□□ 0.58
VRK3Q8IV63 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC18.68■□□□□ 0.58
VRK3Q8IV63 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC18.68■□□□□ 0.58
VRK3Q8IV63 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC18.68■□□□□ 0.58
VRK3Q8IV63 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC18.68■□□□□ 0.58
VRK3Q8IV63 FDX2-206ENST00000492239 773 ntTSL 2 BASIC18.68■□□□□ 0.58
VRK3Q8IV63 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC18.68■□□□□ 0.58
VRK3Q8IV63 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
VRK3Q8IV63 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
VRK3Q8IV63 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC18.68■□□□□ 0.58
VRK3Q8IV63 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
VRK3Q8IV63 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
VRK3Q8IV63 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
VRK3Q8IV63 PSPC1-206ENST00000619300 2013 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
VRK3Q8IV63 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
VRK3Q8IV63 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
VRK3Q8IV63 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
VRK3Q8IV63 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC18.67■□□□□ 0.58
VRK3Q8IV63 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
VRK3Q8IV63 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
VRK3Q8IV63 FLVCR1-201ENST00000366971 5939 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
VRK3Q8IV63 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC18.67■□□□□ 0.58
VRK3Q8IV63 PDP1-208ENST00000520728 2554 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
VRK3Q8IV63 AC011944.1-201ENST00000316148 1900 ntTSL 2 BASIC18.67■□□□□ 0.58
VRK3Q8IV63 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC18.67■□□□□ 0.58
VRK3Q8IV63 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC18.67■□□□□ 0.58
VRK3Q8IV63 IL17C-201ENST00000244241 1044 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
VRK3Q8IV63 SSNA1-201ENST00000322310 896 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
VRK3Q8IV63 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
VRK3Q8IV63 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC18.67■□□□□ 0.58
VRK3Q8IV63 RBM17P1-201ENST00000453646 1190 ntBASIC18.67■□□□□ 0.58
VRK3Q8IV63 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC18.67■□□□□ 0.58
VRK3Q8IV63 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
VRK3Q8IV63 ZNF667-AS1-208ENST00000594783 475 ntTSL 3 BASIC18.67■□□□□ 0.58
VRK3Q8IV63 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
VRK3Q8IV63 SLC5A10-205ENST00000417251 1984 ntTSL 2 BASIC18.67■□□□□ 0.58
VRK3Q8IV63 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 34.4 ms