Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 TRIM73-205ENST00000450434 1425 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
SH3RF1Q7Z6J0 TRIM74-201ENST00000285805 1350 ntAPPRIS P2 TSL 1 (best) BASIC21.91■■□□□ 1.1
SH3RF1Q7Z6J0 TRIM73-201ENST00000323819 1358 ntAPPRIS P2 TSL 1 (best) BASIC21.91■■□□□ 1.1
SH3RF1Q7Z6J0 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC21.91■■□□□ 1.1
SH3RF1Q7Z6J0 PTGDS-202ENST00000371625 807 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
SH3RF1Q7Z6J0 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
SH3RF1Q7Z6J0 AP006284.1-202ENST00000527113 527 ntTSL 4 BASIC21.91■■□□□ 1.1
SH3RF1Q7Z6J0 AC139887.4-201ENST00000607877 719 ntBASIC21.91■■□□□ 1.1
SH3RF1Q7Z6J0 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
SH3RF1Q7Z6J0 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
SH3RF1Q7Z6J0 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
SH3RF1Q7Z6J0 CHMP6-201ENST00000325167 1664 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
SH3RF1Q7Z6J0 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
SH3RF1Q7Z6J0 WWOX-202ENST00000402655 1594 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
SH3RF1Q7Z6J0 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC21.91■■□□□ 1.1
SH3RF1Q7Z6J0 VSTM2B-201ENST00000335523 1488 ntAPPRIS P1 TSL 5 BASIC21.9■■□□□ 1.1
SH3RF1Q7Z6J0 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC21.9■■□□□ 1.1
SH3RF1Q7Z6J0 PTOV1-AS1-201ENST00000596521 2155 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
SH3RF1Q7Z6J0 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC21.9■■□□□ 1.1
SH3RF1Q7Z6J0 FGF8-201ENST00000320185 799 ntAPPRIS P4 TSL 1 (best) BASIC21.9■■□□□ 1.1
SH3RF1Q7Z6J0 MUC1-204ENST00000343256 648 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
SH3RF1Q7Z6J0 FDX2-206ENST00000492239 773 ntTSL 2 BASIC21.9■■□□□ 1.1
SH3RF1Q7Z6J0 AC097488.1-201ENST00000507834 756 ntBASIC21.9■■□□□ 1.1
SH3RF1Q7Z6J0 RAP1B-228ENST00000542145 1060 ntTSL 2 BASIC21.9■■□□□ 1.1
SH3RF1Q7Z6J0 ALDOA-212ENST00000564546 2104 ntAPPRIS P2 TSL 1 (best) BASIC21.9■■□□□ 1.1
SH3RF1Q7Z6J0 LINC01238-205ENST00000567549 1107 ntBASIC21.9■■□□□ 1.1
SH3RF1Q7Z6J0 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC21.9■■□□□ 1.1
SH3RF1Q7Z6J0 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
SH3RF1Q7Z6J0 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC21.9■■□□□ 1.1
SH3RF1Q7Z6J0 SLC6A7-203ENST00000524041 2431 ntTSL 5 BASIC21.9■■□□□ 1.1
SH3RF1Q7Z6J0 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC21.9■■□□□ 1.1
SH3RF1Q7Z6J0 RABEPK-204ENST00000394125 1466 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
SH3RF1Q7Z6J0 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC21.89■■□□□ 1.1
SH3RF1Q7Z6J0 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.1
SH3RF1Q7Z6J0 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
SH3RF1Q7Z6J0 SLC38A11-203ENST00000409149 1621 ntAPPRIS P2 TSL 2 BASIC21.89■■□□□ 1.09
SH3RF1Q7Z6J0 FAM8A6P-201ENST00000407496 1135 ntBASIC21.89■■□□□ 1.09
SH3RF1Q7Z6J0 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC21.89■■□□□ 1.09
SH3RF1Q7Z6J0 AL050404.1-201ENST00000424566 802 ntTSL 2 BASIC21.89■■□□□ 1.09
SH3RF1Q7Z6J0 SAPCD2P2-201ENST00000431719 1174 ntBASIC21.89■■□□□ 1.09
SH3RF1Q7Z6J0 AL133352.1-203ENST00000557395 1234 ntAPPRIS P5 TSL 2 BASIC21.89■■□□□ 1.09
SH3RF1Q7Z6J0 DCTN5-208ENST00000568589 772 ntTSL 2 BASIC21.89■■□□□ 1.09
SH3RF1Q7Z6J0 AC027682.6-202ENST00000621378 795 ntTSL 2 BASIC21.89■■□□□ 1.09
SH3RF1Q7Z6J0 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC21.89■■□□□ 1.09
SH3RF1Q7Z6J0 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
SH3RF1Q7Z6J0 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC21.89■■□□□ 1.09
SH3RF1Q7Z6J0 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC21.89■■□□□ 1.09
SH3RF1Q7Z6J0 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
SH3RF1Q7Z6J0 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC21.88■■□□□ 1.09
SH3RF1Q7Z6J0 ST3GAL4-205ENST00000449406 1669 ntTSL 5 BASIC21.88■■□□□ 1.09
SH3RF1Q7Z6J0 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC21.88■■□□□ 1.09
SH3RF1Q7Z6J0 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC21.88■■□□□ 1.09
SH3RF1Q7Z6J0 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC21.88■■□□□ 1.09
SH3RF1Q7Z6J0 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC21.88■■□□□ 1.09
SH3RF1Q7Z6J0 CENPH-206ENST00000515001 1305 ntTSL 2 BASIC21.88■■□□□ 1.09
SH3RF1Q7Z6J0 PTGES2-214ENST00000617202 1344 ntTSL 5 BASIC21.88■■□□□ 1.09
SH3RF1Q7Z6J0 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
SH3RF1Q7Z6J0 AL139246.2-201ENST00000456687 1297 ntTSL 5 BASIC21.88■■□□□ 1.09
SH3RF1Q7Z6J0 AC128688.1-201ENST00000487626 519 ntBASIC21.88■■□□□ 1.09
SH3RF1Q7Z6J0 AC004080.2-201ENST00000523331 556 ntTSL 4 BASIC21.88■■□□□ 1.09
SH3RF1Q7Z6J0 RAB2A-211ENST00000531289 1058 ntTSL 2 BASIC21.88■■□□□ 1.09
SH3RF1Q7Z6J0 C1QL1P1-201ENST00000568105 661 ntBASIC21.88■■□□□ 1.09
SH3RF1Q7Z6J0 ULK4P3-205ENST00000568486 1158 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
SH3RF1Q7Z6J0 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC21.88■■□□□ 1.09
SH3RF1Q7Z6J0 LCE1C-202ENST00000607093 644 ntAPPRIS P2 BASIC21.88■■□□□ 1.09
SH3RF1Q7Z6J0 AC103746.1-201ENST00000617440 1133 ntTSL 3 BASIC21.88■■□□□ 1.09
SH3RF1Q7Z6J0 AL445675.2-201ENST00000620291 557 ntBASIC21.88■■□□□ 1.09
SH3RF1Q7Z6J0 TNXA-203ENST00000507684 2038 ntBASIC21.88■■□□□ 1.09
SH3RF1Q7Z6J0 DMRT2-204ENST00000382251 2292 ntAPPRIS P1 TSL 5 BASIC21.88■■□□□ 1.09
SH3RF1Q7Z6J0 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC21.88■■□□□ 1.09
SH3RF1Q7Z6J0 GMPPA-213ENST00000622191 1473 ntTSL 5 BASIC21.88■■□□□ 1.09
SH3RF1Q7Z6J0 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC21.88■■□□□ 1.09
SH3RF1Q7Z6J0 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
SH3RF1Q7Z6J0 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
SH3RF1Q7Z6J0 CCAR2-214ENST00000613179 1421 ntTSL 5 BASIC21.88■■□□□ 1.09
SH3RF1Q7Z6J0 ADORA2A-201ENST00000337539 2569 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
SH3RF1Q7Z6J0 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC21.87■■□□□ 1.09
SH3RF1Q7Z6J0 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
SH3RF1Q7Z6J0 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC21.87■■□□□ 1.09
SH3RF1Q7Z6J0 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
SH3RF1Q7Z6J0 KCTD18-201ENST00000359878 2940 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
SH3RF1Q7Z6J0 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
SH3RF1Q7Z6J0 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC21.87■■□□□ 1.09
SH3RF1Q7Z6J0 FKBP3-202ENST00000396062 1346 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
SH3RF1Q7Z6J0 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
SH3RF1Q7Z6J0 ST3GAL4-203ENST00000392669 1724 ntAPPRIS ALT1 TSL 1 (best) BASIC21.87■■□□□ 1.09
SH3RF1Q7Z6J0 MRPL52-201ENST00000311892 1042 ntTSL 3 BASIC21.87■■□□□ 1.09
SH3RF1Q7Z6J0 SPATA22-202ENST00000355380 1216 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
SH3RF1Q7Z6J0 PMF1-BGLAP-202ENST00000368276 852 ntTSL 3 BASIC21.87■■□□□ 1.09
SH3RF1Q7Z6J0 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
SH3RF1Q7Z6J0 INSL3-202ENST00000379695 899 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
SH3RF1Q7Z6J0 ELOB-202ENST00000409477 997 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
SH3RF1Q7Z6J0 AC009947.2-201ENST00000444014 672 ntBASIC21.87■■□□□ 1.09
SH3RF1Q7Z6J0 AC007563.2-201ENST00000447289 552 ntTSL 5 BASIC21.87■■□□□ 1.09
SH3RF1Q7Z6J0 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC21.87■■□□□ 1.09
SH3RF1Q7Z6J0 AC026271.3-201ENST00000571884 352 ntBASIC21.87■■□□□ 1.09
SH3RF1Q7Z6J0 DGCR10-201ENST00000609839 495 ntBASIC21.87■■□□□ 1.09
SH3RF1Q7Z6J0 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
SH3RF1Q7Z6J0 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC21.87■■□□□ 1.09
SH3RF1Q7Z6J0 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC21.87■■□□□ 1.09
Retrieved 100 of 98,524 protein–RNA pairs in 67.2 ms