Protein–RNA interactions for Protein: Q6ZNA4

RNF111, E3 ubiquitin-protein ligase Arkadia, humanhuman

Predictions only

Length 994 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF111Q6ZNA4 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC18.55■□□□□ 0.56
RNF111Q6ZNA4 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC18.55■□□□□ 0.56
RNF111Q6ZNA4 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC18.55■□□□□ 0.56
RNF111Q6ZNA4 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
RNF111Q6ZNA4 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
RNF111Q6ZNA4 AJUBA-202ENST00000361265 2569 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
RNF111Q6ZNA4 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC18.55■□□□□ 0.56
RNF111Q6ZNA4 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC18.55■□□□□ 0.56
RNF111Q6ZNA4 EEF1A1-203ENST00000331523 1923 ntAPPRIS P1 TSL 5 BASIC18.55■□□□□ 0.56
RNF111Q6ZNA4 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
RNF111Q6ZNA4 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
RNF111Q6ZNA4 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
RNF111Q6ZNA4 NDUFB1-201ENST00000329559 528 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
RNF111Q6ZNA4 ESRRAP1-201ENST00000400596 1257 ntBASIC18.55■□□□□ 0.56
RNF111Q6ZNA4 GCC2-AS1-202ENST00000440975 574 ntTSL 4 BASIC18.55■□□□□ 0.56
RNF111Q6ZNA4 HES2-206ENST00000489730 730 ntTSL 2 BASIC18.55■□□□□ 0.56
RNF111Q6ZNA4 EGFEM1P-209ENST00000502332 728 ntTSL 3 BASIC18.55■□□□□ 0.56
RNF111Q6ZNA4 SEC23A-AS1-201ENST00000557350 500 ntTSL 3 BASIC18.55■□□□□ 0.56
RNF111Q6ZNA4 C17orf50-201ENST00000603305 569 ntTSL 3 BASIC18.55■□□□□ 0.56
RNF111Q6ZNA4 C17orf50-203ENST00000605587 1018 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
RNF111Q6ZNA4 DND1-201ENST00000542735 1605 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
RNF111Q6ZNA4 LHX8-201ENST00000294638 2373 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
RNF111Q6ZNA4 ANKRD2-202ENST00000307518 1449 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
RNF111Q6ZNA4 CAV3-201ENST00000343849 1431 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
RNF111Q6ZNA4 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC18.55■□□□□ 0.56
RNF111Q6ZNA4 MXRA8-209ENST00000477278 2728 ntTSL 5 BASIC18.55■□□□□ 0.56
RNF111Q6ZNA4 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
RNF111Q6ZNA4 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC18.55■□□□□ 0.56
RNF111Q6ZNA4 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
RNF111Q6ZNA4 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC18.55■□□□□ 0.56
RNF111Q6ZNA4 EIF2B5-201ENST00000273783 2655 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
RNF111Q6ZNA4 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
RNF111Q6ZNA4 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
RNF111Q6ZNA4 DMAP1-202ENST00000361745 1545 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
RNF111Q6ZNA4 PCID2-202ENST00000337344 1898 ntAPPRIS P1 TSL 2 BASIC18.54■□□□□ 0.56
RNF111Q6ZNA4 TRIM33-202ENST00000369543 3457 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
RNF111Q6ZNA4 TADA2B-204ENST00000512388 1343 ntTSL 5 BASIC18.54■□□□□ 0.56
RNF111Q6ZNA4 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
RNF111Q6ZNA4 GOLGA4-208ENST00000444882 1451 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
RNF111Q6ZNA4 GGTLC1-203ENST00000335694 1046 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
RNF111Q6ZNA4 CEACAM3-201ENST00000344550 1022 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
RNF111Q6ZNA4 MMAB-206ENST00000540016 945 ntTSL 3 BASIC18.54■□□□□ 0.56
RNF111Q6ZNA4 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC18.54■□□□□ 0.56
RNF111Q6ZNA4 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC18.54■□□□□ 0.56
RNF111Q6ZNA4 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC18.54■□□□□ 0.56
RNF111Q6ZNA4 FAM32A-205ENST00000589852 1168 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
RNF111Q6ZNA4 CACNA2D1-203ENST00000423588 1429 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
RNF111Q6ZNA4 NFS1-214ENST00000541387 1436 ntTSL 2 BASIC18.54■□□□□ 0.56
RNF111Q6ZNA4 CCDC157-203ENST00000405659 3052 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
RNF111Q6ZNA4 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
RNF111Q6ZNA4 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC18.54■□□□□ 0.56
RNF111Q6ZNA4 SCARB1-203ENST00000415380 2731 ntTSL 2 BASIC18.54■□□□□ 0.56
RNF111Q6ZNA4 KDELR3-201ENST00000216014 1728 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
RNF111Q6ZNA4 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC18.54■□□□□ 0.56
RNF111Q6ZNA4 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
RNF111Q6ZNA4 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
RNF111Q6ZNA4 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
RNF111Q6ZNA4 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC18.53■□□□□ 0.56
RNF111Q6ZNA4 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC18.53■□□□□ 0.56
RNF111Q6ZNA4 EFTUD1P1-204ENST00000560401 1798 ntBASIC18.53■□□□□ 0.56
RNF111Q6ZNA4 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC18.53■□□□□ 0.56
RNF111Q6ZNA4 FBXL18-205ENST00000620087 2076 ntTSL 5 BASIC18.53■□□□□ 0.56
RNF111Q6ZNA4 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC18.53■□□□□ 0.56
RNF111Q6ZNA4 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
RNF111Q6ZNA4 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
RNF111Q6ZNA4 CBLC-201ENST00000270279 1579 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
RNF111Q6ZNA4 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
RNF111Q6ZNA4 ZNF74-201ENST00000357502 2788 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
RNF111Q6ZNA4 NUDT8-202ENST00000376693 728 ntAPPRIS ALT2 TSL 2 BASIC18.53■□□□□ 0.56
RNF111Q6ZNA4 RGCC-201ENST00000379359 960 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
RNF111Q6ZNA4 GTF2A2-203ENST00000396061 758 ntAPPRIS P1 TSL 2 BASIC18.53■□□□□ 0.56
RNF111Q6ZNA4 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC18.53■□□□□ 0.56
RNF111Q6ZNA4 FAM201B-201ENST00000458407 597 ntBASIC18.53■□□□□ 0.56
RNF111Q6ZNA4 ZNF346-203ENST00000503425 1191 ntTSL 2 BASIC18.53■□□□□ 0.56
RNF111Q6ZNA4 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC18.53■□□□□ 0.56
RNF111Q6ZNA4 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC18.53■□□□□ 0.56
RNF111Q6ZNA4 ANAPC11-223ENST00000612413 964 ntTSL 3 BASIC18.53■□□□□ 0.56
RNF111Q6ZNA4 JADE2-211ENST00000612830 1251 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
RNF111Q6ZNA4 AC120498.8-201ENST00000614275 531 ntBASIC18.53■□□□□ 0.56
RNF111Q6ZNA4 AC005225.2-202ENST00000617980 408 ntTSL 4 BASIC18.53■□□□□ 0.56
RNF111Q6ZNA4 ADD3-AS1-204ENST00000627565 388 ntTSL 3 BASIC18.53■□□□□ 0.56
RNF111Q6ZNA4 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC18.53■□□□□ 0.56
RNF111Q6ZNA4 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC18.53■□□□□ 0.56
RNF111Q6ZNA4 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC18.53■□□□□ 0.56
RNF111Q6ZNA4 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
RNF111Q6ZNA4 MAPKAPK3-201ENST00000357955 2500 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
RNF111Q6ZNA4 EGFL6-202ENST00000380602 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
RNF111Q6ZNA4 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
RNF111Q6ZNA4 FAM214B-203ENST00000378561 5771 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
RNF111Q6ZNA4 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC18.53■□□□□ 0.56
RNF111Q6ZNA4 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
RNF111Q6ZNA4 TMEM53-205ENST00000372244 1472 ntTSL 2 BASIC18.52■□□□□ 0.56
RNF111Q6ZNA4 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.56
RNF111Q6ZNA4 STX3-201ENST00000337979 3299 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
RNF111Q6ZNA4 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
RNF111Q6ZNA4 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC18.52■□□□□ 0.56
RNF111Q6ZNA4 FP475955.4-201ENST00000623131 1990 ntBASIC18.52■□□□□ 0.56
RNF111Q6ZNA4 CCNI2-201ENST00000378731 2355 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.56
RNF111Q6ZNA4 GDPD1-201ENST00000284116 1821 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
RNF111Q6ZNA4 PPP2R2C-209ENST00000515571 1832 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 29.7 ms