Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 C17orf97-203ENST00000571106 736 ntAPPRIS ALT2 TSL 2 BASIC18.52■□□□□ 0.56
FOXA1P55317 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
FOXA1P55317 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC18.52■□□□□ 0.56
FOXA1P55317 SIGLEC10-204ENST00000436984 1776 ntTSL 2 BASIC18.52■□□□□ 0.55
FOXA1P55317 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
FOXA1P55317 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC18.51■□□□□ 0.55
FOXA1P55317 CHST2-201ENST00000309575 4582 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
FOXA1P55317 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC18.51■□□□□ 0.55
FOXA1P55317 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC18.51■□□□□ 0.55
FOXA1P55317 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC18.51■□□□□ 0.55
FOXA1P55317 ZNF326-202ENST00000361911 1538 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
FOXA1P55317 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC18.51■□□□□ 0.55
FOXA1P55317 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
FOXA1P55317 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
FOXA1P55317 LGALS7B-201ENST00000314980 483 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
FOXA1P55317 AC068831.2-201ENST00000448987 367 ntTSL 2 BASIC18.51■□□□□ 0.55
FOXA1P55317 KCTD10-211ENST00000540411 866 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
FOXA1P55317 ANAPC11-219ENST00000583839 499 ntAPPRIS P1 TSL 2 BASIC18.51■□□□□ 0.55
FOXA1P55317 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC18.51■□□□□ 0.55
FOXA1P55317 AC005225.2-202ENST00000617980 408 ntTSL 4 BASIC18.51■□□□□ 0.55
FOXA1P55317 MARCH8-201ENST00000319836 5272 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
FOXA1P55317 UTP18-201ENST00000225298 1894 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
FOXA1P55317 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
FOXA1P55317 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
FOXA1P55317 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
FOXA1P55317 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC18.51■□□□□ 0.55
FOXA1P55317 SBDS-201ENST00000246868 1631 ntAPPRIS P2 TSL 1 (best) BASIC18.51■□□□□ 0.55
FOXA1P55317 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
FOXA1P55317 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
FOXA1P55317 ZNF419-205ENST00000424930 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
FOXA1P55317 LGI3-201ENST00000306317 3272 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
FOXA1P55317 SLC12A5-210ENST00000616202 2445 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
FOXA1P55317 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC18.51■□□□□ 0.55
FOXA1P55317 IL6R-208ENST00000622330 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
FOXA1P55317 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
FOXA1P55317 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC18.51■□□□□ 0.55
FOXA1P55317 ZBTB8A-201ENST00000316459 1943 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
FOXA1P55317 ZAR1L-202ENST00000533490 1564 ntAPPRIS P1 TSL 5 BASIC18.51■□□□□ 0.55
FOXA1P55317 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC18.51■□□□□ 0.55
FOXA1P55317 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC18.5■□□□□ 0.55
FOXA1P55317 SORBS3-221ENST00000523965 2028 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
FOXA1P55317 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC18.5■□□□□ 0.55
FOXA1P55317 AP001626.1-201ENST00000424890 2854 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
FOXA1P55317 CCNJL-203ENST00000393977 3320 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
FOXA1P55317 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
FOXA1P55317 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
FOXA1P55317 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
FOXA1P55317 THAP7-201ENST00000215742 1213 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
FOXA1P55317 AC114730.1-201ENST00000400768 472 ntTSL 4 BASIC18.5■□□□□ 0.55
FOXA1P55317 AC079145.1-201ENST00000416575 541 ntTSL 2 BASIC18.5■□□□□ 0.55
FOXA1P55317 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
FOXA1P55317 AC127496.6-201ENST00000576215 338 ntTSL 3 BASIC18.5■□□□□ 0.55
FOXA1P55317 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC18.5■□□□□ 0.55
FOXA1P55317 HLA-A-209ENST00000638375 975 ntBASIC18.5■□□□□ 0.55
FOXA1P55317 GOLGA6L5P-202ENST00000515341 1828 ntBASIC18.5■□□□□ 0.55
FOXA1P55317 SCYL2-201ENST00000360820 5779 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
FOXA1P55317 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
FOXA1P55317 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC18.5■□□□□ 0.55
FOXA1P55317 NPIPA8-201ENST00000525596 1565 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
FOXA1P55317 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC18.5■□□□□ 0.55
FOXA1P55317 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC18.5■□□□□ 0.55
FOXA1P55317 PARS2-201ENST00000371279 2347 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
FOXA1P55317 CADPS-201ENST00000283269 4591 ntAPPRIS P4 TSL 1 (best) BASIC18.5■□□□□ 0.55
FOXA1P55317 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC18.5■□□□□ 0.55
FOXA1P55317 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC18.5■□□□□ 0.55
FOXA1P55317 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
FOXA1P55317 AATK-AS1-203ENST00000637878 1306 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
FOXA1P55317 ARHGAP22-203ENST00000374172 2380 ntTSL 2 BASIC18.49■□□□□ 0.55
FOXA1P55317 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC18.49■□□□□ 0.55
FOXA1P55317 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC18.49■□□□□ 0.55
FOXA1P55317 SLC16A13-201ENST00000308027 1748 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
FOXA1P55317 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
FOXA1P55317 TSGA10IP-203ENST00000532620 1925 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
FOXA1P55317 AD000671.2-201ENST00000589807 1925 ntAPPRIS P1 TSL 2 BASIC18.49■□□□□ 0.55
FOXA1P55317 SLC6A18-201ENST00000324642 2121 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
FOXA1P55317 AC090164.3-201ENST00000610780 2143 ntBASIC18.49■□□□□ 0.55
FOXA1P55317 ANKRD13D-201ENST00000308440 2219 ntTSL 2 BASIC18.49■□□□□ 0.55
FOXA1P55317 ACAP3-202ENST00000354700 3896 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
FOXA1P55317 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
FOXA1P55317 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC18.49■□□□□ 0.55
FOXA1P55317 SYNE2-201ENST00000341472 1132 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
FOXA1P55317 AIDA-202ENST00000355727 1072 ntTSL 5 BASIC18.49■□□□□ 0.55
FOXA1P55317 AL355802.2-201ENST00000402069 882 ntBASIC18.49■□□□□ 0.55
FOXA1P55317 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
FOXA1P55317 MCRIP1-201ENST00000455127 1209 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
FOXA1P55317 KLF13-207ENST00000560473 489 ntTSL 3 BASIC18.49■□□□□ 0.55
FOXA1P55317 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC18.49■□□□□ 0.55
FOXA1P55317 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC18.49■□□□□ 0.55
FOXA1P55317 AC068987.5-201ENST00000642069 987 ntAPPRIS P1 BASIC18.49■□□□□ 0.55
FOXA1P55317 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
FOXA1P55317 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC18.49■□□□□ 0.55
FOXA1P55317 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
FOXA1P55317 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
FOXA1P55317 LZTS3-201ENST00000329152 5257 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
FOXA1P55317 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
FOXA1P55317 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
FOXA1P55317 ENTPD8-202ENST00000371506 2222 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
FOXA1P55317 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
FOXA1P55317 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
FOXA1P55317 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC18.49■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 41.9 ms