Protein–RNA interactions for Protein: P51956

NEK3, Serine/threonine-protein kinase Nek3, humanhuman

Predictions only

Length 506 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3P51956 C12orf76-208ENST00000551185 496 ntTSL 2 BASIC19.71■□□□□ 0.75
NEK3P51956 HLX-AS1-201ENST00000552026 563 ntTSL 4 BASIC19.71■□□□□ 0.75
NEK3P51956 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC19.71■□□□□ 0.75
NEK3P51956 AP003071.4-201ENST00000562276 1284 ntBASIC19.71■□□□□ 0.75
NEK3P51956 SNX21-213ENST00000614929 587 ntTSL 5 BASIC19.71■□□□□ 0.75
NEK3P51956 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
NEK3P51956 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
NEK3P51956 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC19.71■□□□□ 0.75
NEK3P51956 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
NEK3P51956 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
NEK3P51956 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC19.71■□□□□ 0.75
NEK3P51956 RBM26-207ENST00000622611 5230 ntTSL 2 BASIC19.71■□□□□ 0.75
NEK3P51956 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
NEK3P51956 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
NEK3P51956 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC19.7■□□□□ 0.74
NEK3P51956 GJB6-204ENST00000400066 1927 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
NEK3P51956 RAI14-201ENST00000265109 5092 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
NEK3P51956 NFIX-202ENST00000360105 5459 ntTSL 5 BASIC19.7■□□□□ 0.74
NEK3P51956 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC19.7■□□□□ 0.74
NEK3P51956 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC19.7■□□□□ 0.74
NEK3P51956 P2RX5-202ENST00000345901 2031 ntTSL 5 BASIC19.7■□□□□ 0.74
NEK3P51956 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
NEK3P51956 NDUFB10-201ENST00000268668 705 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
NEK3P51956 CLDND2-201ENST00000291715 974 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
NEK3P51956 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC19.7■□□□□ 0.74
NEK3P51956 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC19.7■□□□□ 0.74
NEK3P51956 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC19.7■□□□□ 0.74
NEK3P51956 AC026412.1-201ENST00000507290 1033 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
NEK3P51956 BX088651.1-201ENST00000540551 451 ntBASIC19.7■□□□□ 0.74
NEK3P51956 AL355075.4-201ENST00000554988 638 ntBASIC19.7■□□□□ 0.74
NEK3P51956 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC19.7■□□□□ 0.74
NEK3P51956 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC19.7■□□□□ 0.74
NEK3P51956 DECR2-212ENST00000627716 352 ntTSL 2 BASIC19.7■□□□□ 0.74
NEK3P51956 FUZ-201ENST00000313777 1675 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
NEK3P51956 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
NEK3P51956 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC19.7■□□□□ 0.74
NEK3P51956 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
NEK3P51956 CENPH-206ENST00000515001 1305 ntTSL 2 BASIC19.7■□□□□ 0.74
NEK3P51956 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
NEK3P51956 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC19.7■□□□□ 0.74
NEK3P51956 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC19.69■□□□□ 0.74
NEK3P51956 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC19.69■□□□□ 0.74
NEK3P51956 HLX-201ENST00000366903 2280 ntAPPRIS P2 TSL 1 (best) BASIC19.69■□□□□ 0.74
NEK3P51956 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC19.69■□□□□ 0.74
NEK3P51956 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
NEK3P51956 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
NEK3P51956 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
NEK3P51956 NEFHP1-201ENST00000412845 2629 ntBASIC19.69■□□□□ 0.74
NEK3P51956 PMF1-BGLAP-202ENST00000368276 852 ntTSL 3 BASIC19.69■□□□□ 0.74
NEK3P51956 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
NEK3P51956 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC19.69■□□□□ 0.74
NEK3P51956 AKIP1-206ENST00000525005 1128 ntTSL 2 BASIC19.69■□□□□ 0.74
NEK3P51956 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC19.69■□□□□ 0.74
NEK3P51956 C17orf62-230ENST00000583617 866 ntTSL 5 BASIC19.69■□□□□ 0.74
NEK3P51956 CR392000.1-201ENST00000624770 1228 ntBASIC19.69■□□□□ 0.74
NEK3P51956 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC19.69■□□□□ 0.74
NEK3P51956 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
NEK3P51956 HCCS-201ENST00000321143 2277 ntAPPRIS P1 TSL 2 BASIC19.69■□□□□ 0.74
NEK3P51956 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
NEK3P51956 DACT2-204ENST00000610183 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
NEK3P51956 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC19.69■□□□□ 0.74
NEK3P51956 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
NEK3P51956 PLCXD1-202ENST00000381663 1863 ntAPPRIS P2 TSL 5 BASIC19.69■□□□□ 0.74
NEK3P51956 ALDOA-212ENST00000564546 2104 ntAPPRIS P2 TSL 1 (best) BASIC19.69■□□□□ 0.74
NEK3P51956 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
NEK3P51956 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
NEK3P51956 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC19.68■□□□□ 0.74
NEK3P51956 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
NEK3P51956 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
NEK3P51956 KRT16P1-201ENST00000399124 1418 ntBASIC19.68■□□□□ 0.74
NEK3P51956 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
NEK3P51956 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC19.68■□□□□ 0.74
NEK3P51956 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
NEK3P51956 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
NEK3P51956 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC19.68■□□□□ 0.74
NEK3P51956 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
NEK3P51956 PRSS3-201ENST00000342836 1144 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
NEK3P51956 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
NEK3P51956 TMUB1-205ENST00000482202 899 ntAPPRIS P1 TSL 3 BASIC19.68■□□□□ 0.74
NEK3P51956 NUDT16P1-203ENST00000513809 620 ntBASIC19.68■□□□□ 0.74
NEK3P51956 AC136628.4-201ENST00000520758 535 ntTSL 2 BASIC19.68■□□□□ 0.74
NEK3P51956 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
NEK3P51956 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC19.68■□□□□ 0.74
NEK3P51956 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
NEK3P51956 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
NEK3P51956 SLC4A4-201ENST00000264485 5852 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
NEK3P51956 EVX1-202ENST00000496902 2955 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
NEK3P51956 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
NEK3P51956 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
NEK3P51956 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
NEK3P51956 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
NEK3P51956 TWF2-203ENST00000499914 1440 ntTSL 5 BASIC19.68■□□□□ 0.74
NEK3P51956 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
NEK3P51956 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
NEK3P51956 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
NEK3P51956 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
NEK3P51956 KCNQ5-201ENST00000342056 6688 ntAPPRIS ALT1 TSL 5 BASIC19.67■□□□□ 0.74
NEK3P51956 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC19.67■□□□□ 0.74
NEK3P51956 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC19.67■□□□□ 0.74
NEK3P51956 SSC4D-201ENST00000275560 2801 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 18.8 ms