Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 ENOPH1-201ENST00000273920 2025 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SIX3O95343 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SIX3O95343 WBP2-213ENST00000590221 1745 ntAPPRIS ALT1 TSL 3 BASIC18.69■□□□□ 0.58
SIX3O95343 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SIX3O95343 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
SIX3O95343 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SIX3O95343 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SIX3O95343 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
SIX3O95343 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
SIX3O95343 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
SIX3O95343 PRODH-215ENST00000610940 2405 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
SIX3O95343 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC18.69■□□□□ 0.58
SIX3O95343 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC18.69■□□□□ 0.58
SIX3O95343 CAPS-201ENST00000452990 1789 ntTSL 5 BASIC18.69■□□□□ 0.58
SIX3O95343 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC18.69■□□□□ 0.58
SIX3O95343 UBE2QL1-201ENST00000399816 4317 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SIX3O95343 ID1-201ENST00000376105 1233 ntBASIC18.69■□□□□ 0.58
SIX3O95343 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC18.69■□□□□ 0.58
SIX3O95343 NREP-209ENST00000455559 698 ntAPPRIS P1 TSL 4 BASIC18.69■□□□□ 0.58
SIX3O95343 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
SIX3O95343 TAPT1-201ENST00000405303 4591 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SIX3O95343 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SIX3O95343 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC18.69■□□□□ 0.58
SIX3O95343 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SIX3O95343 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SIX3O95343 BCAT2-208ENST00000598162 1329 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
SIX3O95343 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SIX3O95343 PLA2G7-201ENST00000274793 1882 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SIX3O95343 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
SIX3O95343 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
SIX3O95343 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
SIX3O95343 ROR1-201ENST00000371079 5832 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
SIX3O95343 NPIPA8-201ENST00000525596 1565 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SIX3O95343 IL1R1-205ENST00000410023 5143 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SIX3O95343 AL031598.1-201ENST00000561511 1773 ntBASIC18.68■□□□□ 0.58
SIX3O95343 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SIX3O95343 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
SIX3O95343 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SIX3O95343 LRRC36-201ENST00000329956 2395 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SIX3O95343 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
SIX3O95343 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC18.68■□□□□ 0.58
SIX3O95343 GALNT10-201ENST00000297107 5961 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SIX3O95343 TTC9B-201ENST00000311308 843 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SIX3O95343 YBEY-205ENST00000397694 534 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
SIX3O95343 AP000282.1-201ENST00000454622 682 ntTSL 2 BASIC18.68■□□□□ 0.58
SIX3O95343 ZNF529-AS1-202ENST00000475219 1033 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
SIX3O95343 LCN6-203ENST00000476567 1015 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
SIX3O95343 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC18.68■□□□□ 0.58
SIX3O95343 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC18.68■□□□□ 0.58
SIX3O95343 SPI1-204ENST00000533968 1290 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
SIX3O95343 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC18.68■□□□□ 0.58
SIX3O95343 EMC9-206ENST00000560403 872 ntTSL 2 BASIC18.68■□□□□ 0.58
SIX3O95343 MTDHP1-201ENST00000605323 784 ntBASIC18.68■□□□□ 0.58
SIX3O95343 AC069544.1-201ENST00000609399 999 ntBASIC18.68■□□□□ 0.58
SIX3O95343 HLA-A-209ENST00000638375 975 ntBASIC18.68■□□□□ 0.58
SIX3O95343 DUSP15-209ENST00000486996 1651 ntTSL 2 BASIC18.68■□□□□ 0.58
SIX3O95343 CD7-206ENST00000583376 1659 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
SIX3O95343 PALM3-201ENST00000340790 2262 ntAPPRIS P2 TSL 5 BASIC18.68■□□□□ 0.58
SIX3O95343 TTLL10-203ENST00000379290 2283 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SIX3O95343 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC18.68■□□□□ 0.58
SIX3O95343 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SIX3O95343 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC18.68■□□□□ 0.58
SIX3O95343 MCU-202ENST00000373053 2949 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SIX3O95343 GJB6-204ENST00000400066 1927 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SIX3O95343 GPR20-201ENST00000377741 1515 ntAPPRIS P1 TSL 3 BASIC18.68■□□□□ 0.58
SIX3O95343 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SIX3O95343 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC18.68■□□□□ 0.58
SIX3O95343 C3orf70-201ENST00000335012 5901 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SIX3O95343 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC18.68■□□□□ 0.58
SIX3O95343 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
SIX3O95343 LYNX1-204ENST00000614491 4708 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
SIX3O95343 AC009113.1-201ENST00000570267 2443 ntBASIC18.68■□□□□ 0.58
SIX3O95343 DNAJC28-204ENST00000617313 2237 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
SIX3O95343 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SIX3O95343 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC18.67■□□□□ 0.58
SIX3O95343 SBDS-201ENST00000246868 1631 ntAPPRIS P2 TSL 1 (best) BASIC18.67■□□□□ 0.58
SIX3O95343 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SIX3O95343 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SIX3O95343 KLHL14-201ENST00000358095 1884 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
SIX3O95343 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
SIX3O95343 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
SIX3O95343 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SIX3O95343 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SIX3O95343 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC18.67■□□□□ 0.58
SIX3O95343 WDR74-202ENST00000311713 1153 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
SIX3O95343 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
SIX3O95343 GTF2A2-203ENST00000396061 758 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
SIX3O95343 MPV17L-202ENST00000396385 1037 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SIX3O95343 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC18.67■□□□□ 0.58
SIX3O95343 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC18.67■□□□□ 0.58
SIX3O95343 CLN6-207ENST00000566347 981 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
SIX3O95343 C1QL1P1-201ENST00000568105 661 ntBASIC18.67■□□□□ 0.58
SIX3O95343 SLC35A3-218ENST00000639994 1114 ntTSL 5 BASIC18.67■□□□□ 0.58
SIX3O95343 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC18.67■□□□□ 0.58
SIX3O95343 BAIAP2-204ENST00000428708 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
SIX3O95343 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SIX3O95343 RNF146-201ENST00000309649 2624 ntAPPRIS P3 TSL 4 BASIC18.67■□□□□ 0.58
SIX3O95343 POU3F2-201ENST00000328345 4879 ntAPPRIS P1 BASIC18.67■□□□□ 0.58
SIX3O95343 ACAP3-202ENST00000354700 3896 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SIX3O95343 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 20.2 ms