Protein–RNA interactions for Protein: O95025

SEMA3D, Semaphorin-3D, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3DO95025 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC18.3■□□□□ 0.52
SEMA3DO95025 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
SEMA3DO95025 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
SEMA3DO95025 PTOV1-AS1-201ENST00000596521 2155 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
SEMA3DO95025 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC18.3■□□□□ 0.52
SEMA3DO95025 ARMC6-202ENST00000392335 2383 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
SEMA3DO95025 AP000974.1-201ENST00000623909 2387 ntBASIC18.3■□□□□ 0.52
SEMA3DO95025 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC18.3■□□□□ 0.52
SEMA3DO95025 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
SEMA3DO95025 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC18.3■□□□□ 0.52
SEMA3DO95025 GLRB-207ENST00000541722 2765 ntTSL 5 BASIC18.3■□□□□ 0.52
SEMA3DO95025 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
SEMA3DO95025 ACOT8-201ENST00000217455 1168 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
SEMA3DO95025 LGALS7B-201ENST00000314980 483 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
SEMA3DO95025 STK24-AS1-201ENST00000434547 1278 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
SEMA3DO95025 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
SEMA3DO95025 NDUFA13-203ENST00000503283 825 ntTSL 2 BASIC18.3■□□□□ 0.52
SEMA3DO95025 RPPH1-201ENST00000516869 333 ntBASIC18.3■□□□□ 0.52
SEMA3DO95025 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC18.3■□□□□ 0.52
SEMA3DO95025 C17orf62-238ENST00000585064 1074 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
SEMA3DO95025 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
SEMA3DO95025 TSPAN4-204ENST00000397404 1462 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
SEMA3DO95025 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC18.3■□□□□ 0.52
SEMA3DO95025 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
SEMA3DO95025 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC18.3■□□□□ 0.52
SEMA3DO95025 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
SEMA3DO95025 TXNRD3-205ENST00000640797 1824 ntAPPRIS ALT2 TSL 2 BASIC18.3■□□□□ 0.52
SEMA3DO95025 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC18.3■□□□□ 0.52
SEMA3DO95025 IQCJ-SCHIP1-207ENST00000638749 2633 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
SEMA3DO95025 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
SEMA3DO95025 FP475955.4-201ENST00000623131 1990 ntBASIC18.3■□□□□ 0.52
SEMA3DO95025 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
SEMA3DO95025 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC18.29■□□□□ 0.52
SEMA3DO95025 TADA2B-204ENST00000512388 1343 ntTSL 5 BASIC18.29■□□□□ 0.52
SEMA3DO95025 P2RX3-204ENST00000616487 1346 ntTSL 5 BASIC18.29■□□□□ 0.52
SEMA3DO95025 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
SEMA3DO95025 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC18.29■□□□□ 0.52
SEMA3DO95025 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
SEMA3DO95025 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
SEMA3DO95025 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC18.29■□□□□ 0.52
SEMA3DO95025 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC18.29■□□□□ 0.52
SEMA3DO95025 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
SEMA3DO95025 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC18.29■□□□□ 0.52
SEMA3DO95025 TSPY20P-201ENST00000450910 630 ntBASIC18.29■□□□□ 0.52
SEMA3DO95025 AC137630.1-201ENST00000452042 782 ntTSL 4 BASIC18.29■□□□□ 0.52
SEMA3DO95025 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC18.29■□□□□ 0.52
SEMA3DO95025 C19orf25-213ENST00000592872 1287 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
SEMA3DO95025 AL353593.2-202ENST00000602947 550 ntTSL 4 BASIC18.29■□□□□ 0.52
SEMA3DO95025 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC18.29■□□□□ 0.52
SEMA3DO95025 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC18.29■□□□□ 0.52
SEMA3DO95025 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
SEMA3DO95025 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
SEMA3DO95025 PAFAH1B2-202ENST00000419197 2517 ntTSL 2 BASIC18.29■□□□□ 0.52
SEMA3DO95025 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC18.29■□□□□ 0.52
SEMA3DO95025 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC18.29■□□□□ 0.52
SEMA3DO95025 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
SEMA3DO95025 CADPS2-208ENST00000615869 6066 ntAPPRIS ALT1 TSL 5 BASIC18.29■□□□□ 0.52
SEMA3DO95025 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
SEMA3DO95025 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC18.29■□□□□ 0.52
SEMA3DO95025 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
SEMA3DO95025 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
SEMA3DO95025 PTPRE-201ENST00000254667 5331 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
SEMA3DO95025 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC18.28■□□□□ 0.52
SEMA3DO95025 C21orf58-205ENST00000397683 1674 ntAPPRIS ALT2 TSL 2 BASIC18.28■□□□□ 0.52
SEMA3DO95025 PARP15-202ENST00000464300 2156 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
SEMA3DO95025 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC18.28■□□□□ 0.52
SEMA3DO95025 IRX1P1-201ENST00000438849 1838 ntBASIC18.28■□□□□ 0.52
SEMA3DO95025 HTR7P1-201ENST00000538670 1336 ntBASIC18.28■□□□□ 0.52
SEMA3DO95025 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC18.28■□□□□ 0.52
SEMA3DO95025 IL6R-208ENST00000622330 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
SEMA3DO95025 CAMKK1-202ENST00000348335 3563 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
SEMA3DO95025 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
SEMA3DO95025 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
SEMA3DO95025 ATP5D-201ENST00000215375 997 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
SEMA3DO95025 BOLA1-203ENST00000369153 1096 ntAPPRIS P1 TSL 3 BASIC18.28■□□□□ 0.52
SEMA3DO95025 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
SEMA3DO95025 KRT18P29-201ENST00000397031 1267 ntBASIC18.28■□□□□ 0.52
SEMA3DO95025 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC18.28■□□□□ 0.52
SEMA3DO95025 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC18.28■□□□□ 0.52
SEMA3DO95025 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
SEMA3DO95025 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC18.28■□□□□ 0.52
SEMA3DO95025 AP002982.1-201ENST00000492365 877 ntBASIC18.28■□□□□ 0.52
SEMA3DO95025 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC18.28■□□□□ 0.52
SEMA3DO95025 RARRES2P10-201ENST00000564312 460 ntBASIC18.28■□□□□ 0.52
SEMA3DO95025 DCTPP1-205ENST00000568973 878 ntTSL 2 BASIC18.28■□□□□ 0.52
SEMA3DO95025 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
SEMA3DO95025 KRTAP5-11-203ENST00000617152 558 ntAPPRIS ALT2 TSL 5 BASIC18.28■□□□□ 0.52
SEMA3DO95025 SULF2-201ENST00000359930 4915 ntAPPRIS P4 TSL 1 (best) BASIC18.28■□□□□ 0.52
SEMA3DO95025 KCNQ2-201ENST00000344425 1426 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
SEMA3DO95025 PTPN12-201ENST00000248594 3406 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
SEMA3DO95025 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
SEMA3DO95025 KAZN-203ENST00000376030 6030 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
SEMA3DO95025 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
SEMA3DO95025 ROPN1-209ENST00000495093 1376 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
SEMA3DO95025 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC18.28■□□□□ 0.52
SEMA3DO95025 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC18.28■□□□□ 0.52
SEMA3DO95025 C4orf32-201ENST00000309733 8901 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
SEMA3DO95025 SHC3-202ENST00000375835 9768 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
SEMA3DO95025 MBIP-203ENST00000416007 1648 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.52
SEMA3DO95025 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 46.2 ms