Protein–RNA interactions for Protein: O60260

PRKN, E3 ubiquitin-protein ligase parkin, humanhuman

Predicted RBP Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKNO60260 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
PRKNO60260 MARC2-202ENST00000366913 2134 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
PRKNO60260 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC17.8■□□□□ 0.44
PRKNO60260 SERGEF-201ENST00000265965 1566 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
PRKNO60260 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC17.8■□□□□ 0.44
PRKNO60260 PFKFB3-219ENST00000640683 2311 ntTSL 5 BASIC17.8■□□□□ 0.44
PRKNO60260 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
PRKNO60260 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
PRKNO60260 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
PRKNO60260 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
PRKNO60260 MUC1-211ENST00000438413 927 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
PRKNO60260 TARBP2-220ENST00000552857 916 ntTSL 5 BASIC17.8■□□□□ 0.44
PRKNO60260 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
PRKNO60260 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
PRKNO60260 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
PRKNO60260 TEX21P-204ENST00000641479 1693 ntBASIC17.8■□□□□ 0.44
PRKNO60260 OTOP3-201ENST00000328801 2363 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
PRKNO60260 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
PRKNO60260 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
PRKNO60260 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
PRKNO60260 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
PRKNO60260 APIP-201ENST00000395787 1366 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
PRKNO60260 ACVR1B-201ENST00000257963 4563 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
PRKNO60260 MUTYH-203ENST00000372098 1839 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
PRKNO60260 MUTYH-204ENST00000372104 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
PRKNO60260 MUTYH-205ENST00000372110 1809 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
PRKNO60260 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC17.79■□□□□ 0.44
PRKNO60260 YPEL5-205ENST00000402708 1735 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
PRKNO60260 HLA-DRB1-201ENST00000360004 1229 ntAPPRIS P1 BASIC17.79■□□□□ 0.44
PRKNO60260 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
PRKNO60260 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC17.79■□□□□ 0.44
PRKNO60260 EIF3B-202ENST00000397011 2966 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
PRKNO60260 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC17.79■□□□□ 0.44
PRKNO60260 AP005242.2-201ENST00000580065 1175 ntBASIC17.79■□□□□ 0.44
PRKNO60260 ZNF667-AS1-208ENST00000594783 475 ntTSL 3 BASIC17.79■□□□□ 0.44
PRKNO60260 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC17.79■□□□□ 0.44
PRKNO60260 AC012306.2-201ENST00000609350 630 ntBASIC17.79■□□□□ 0.44
PRKNO60260 AC010947.1-201ENST00000623454 693 ntBASIC17.79■□□□□ 0.44
PRKNO60260 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
PRKNO60260 MIB2-203ENST00000378712 2890 ntTSL 2 BASIC17.79■□□□□ 0.44
PRKNO60260 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
PRKNO60260 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
PRKNO60260 SNRPN-207ENST00000554227 1763 ntTSL 5 BASIC17.79■□□□□ 0.44
PRKNO60260 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC17.78■□□□□ 0.44
PRKNO60260 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
PRKNO60260 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
PRKNO60260 RASGRP1-201ENST00000310803 5023 ntAPPRIS P2 TSL 1 (best) BASIC17.78■□□□□ 0.44
PRKNO60260 RASGRP1-204ENST00000539159 5021 ntAPPRIS ALT1 TSL 5 BASIC17.78■□□□□ 0.44
PRKNO60260 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
PRKNO60260 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
PRKNO60260 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
PRKNO60260 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC17.78■□□□□ 0.44
PRKNO60260 HTR1E-201ENST00000305344 2052 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
PRKNO60260 ADORA2A-215ENST00000618076 2630 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
PRKNO60260 AC233280.1-201ENST00000423600 1684 ntTSL 2 BASIC17.78■□□□□ 0.44
PRKNO60260 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC17.78■□□□□ 0.44
PRKNO60260 AC005332.7-201ENST00000614046 2005 ntBASIC17.78■□□□□ 0.44
PRKNO60260 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC17.78■□□□□ 0.44
PRKNO60260 AL954642.1-201ENST00000428088 538 ntTSL 3 BASIC17.78■□□□□ 0.44
PRKNO60260 MFAP1P1-201ENST00000442257 1255 ntBASIC17.78■□□□□ 0.44
PRKNO60260 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC17.78■□□□□ 0.44
PRKNO60260 GRAMD4P8-201ENST00000605465 1115 ntBASIC17.78■□□□□ 0.44
PRKNO60260 LPCAT3-201ENST00000261407 2268 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
PRKNO60260 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
PRKNO60260 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
PRKNO60260 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
PRKNO60260 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
PRKNO60260 CUTC-202ENST00000370476 1346 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
PRKNO60260 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC17.77■□□□□ 0.44
PRKNO60260 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC17.77■□□□□ 0.44
PRKNO60260 C1orf210-202ENST00000523677 1478 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
PRKNO60260 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
PRKNO60260 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
PRKNO60260 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.44
PRKNO60260 SPRYD7-204ENST00000613924 2285 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
PRKNO60260 YAP1-202ENST00000345877 5284 ntTSL 5 BASIC17.77■□□□□ 0.44
PRKNO60260 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
PRKNO60260 MDK-201ENST00000359803 985 ntAPPRIS P2 TSL 2 BASIC17.77■□□□□ 0.44
PRKNO60260 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC17.77■□□□□ 0.44
PRKNO60260 STXBP1-203ENST00000476182 566 ntTSL 5 BASIC17.77■□□□□ 0.44
PRKNO60260 AC091153.3-201ENST00000497885 472 ntTSL 2 BASIC17.77■□□□□ 0.44
PRKNO60260 TESMIN-209ENST00000544963 1235 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
PRKNO60260 CLDND2-203ENST00000601435 575 ntAPPRIS P1 TSL 3 BASIC17.77■□□□□ 0.44
PRKNO60260 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC17.77■□□□□ 0.44
PRKNO60260 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC17.77■□□□□ 0.44
PRKNO60260 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
PRKNO60260 KRT8P11-201ENST00000409686 1436 ntBASIC17.77■□□□□ 0.44
PRKNO60260 HMCES-201ENST00000383463 2515 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
PRKNO60260 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
PRKNO60260 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC17.77■□□□□ 0.44
PRKNO60260 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
PRKNO60260 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC17.77■□□□□ 0.43
PRKNO60260 NCF1-201ENST00000289473 1396 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
PRKNO60260 AC096733.2-201ENST00000609937 1394 ntBASIC17.77■□□□□ 0.43
PRKNO60260 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
PRKNO60260 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
PRKNO60260 TAPT1-201ENST00000405303 4591 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
PRKNO60260 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
PRKNO60260 ATIC-205ENST00000435675 2275 ntTSL 2 BASIC17.77■□□□□ 0.43
PRKNO60260 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 38.7 ms