Protein–RNA interactions for Protein: O00257

CBX4, E3 SUMO-protein ligase CBX4, humanhuman

Predictions only

Length 560 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4O00257 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CBX4O00257 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC19.55■□□□□ 0.72
CBX4O00257 CACYBP-202ENST00000405362 1059 ntTSL 5 BASIC19.55■□□□□ 0.72
CBX4O00257 KRT8P11-201ENST00000409686 1436 ntBASIC19.55■□□□□ 0.72
CBX4O00257 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC19.55■□□□□ 0.72
CBX4O00257 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CBX4O00257 TAPBP-236ENST00000456592 817 ntTSL 5 BASIC19.55■□□□□ 0.72
CBX4O00257 LINC01184-202ENST00000501173 949 ntTSL 5 BASIC19.55■□□□□ 0.72
CBX4O00257 KRT18P35-201ENST00000510488 1269 ntBASIC19.55■□□□□ 0.72
CBX4O00257 OAF-202ENST00000531220 815 ntAPPRIS ALT2 TSL 3 BASIC19.55■□□□□ 0.72
CBX4O00257 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC19.55■□□□□ 0.72
CBX4O00257 SLC25A11-202ENST00000544061 952 ntTSL 3 BASIC19.55■□□□□ 0.72
CBX4O00257 TESMIN-209ENST00000544963 1235 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
CBX4O00257 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC19.55■□□□□ 0.72
CBX4O00257 NPTX1-201ENST00000306773 5122 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CBX4O00257 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CBX4O00257 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC19.55■□□□□ 0.72
CBX4O00257 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC19.55■□□□□ 0.72
CBX4O00257 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC19.55■□□□□ 0.72
CBX4O00257 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
CBX4O00257 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CBX4O00257 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC19.55■□□□□ 0.72
CBX4O00257 CAMK4-210ENST00000512453 1640 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
CBX4O00257 CYP2D8P-201ENST00000433633 1490 ntBASIC19.54■□□□□ 0.72
CBX4O00257 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
CBX4O00257 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC19.54■□□□□ 0.72
CBX4O00257 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
CBX4O00257 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
CBX4O00257 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
CBX4O00257 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC19.54■□□□□ 0.72
CBX4O00257 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC19.54■□□□□ 0.72
CBX4O00257 IFI6-201ENST00000339145 822 ntAPPRIS P4 TSL 2 BASIC19.54■□□□□ 0.72
CBX4O00257 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC19.54■□□□□ 0.72
CBX4O00257 AL731557.1-201ENST00000425264 744 ntTSL 3 BASIC19.54■□□□□ 0.72
CBX4O00257 PSMB5-205ENST00000493471 1117 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
CBX4O00257 NAPSB-206ENST00000562112 1266 ntBASIC19.54■□□□□ 0.72
CBX4O00257 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC19.54■□□□□ 0.72
CBX4O00257 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
CBX4O00257 CDH5-204ENST00000563425 1932 ntTSL 5 BASIC19.54■□□□□ 0.72
CBX4O00257 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
CBX4O00257 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
CBX4O00257 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
CBX4O00257 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC19.54■□□□□ 0.72
CBX4O00257 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
CBX4O00257 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
CBX4O00257 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CBX4O00257 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CBX4O00257 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
CBX4O00257 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CBX4O00257 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC19.53■□□□□ 0.72
CBX4O00257 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC19.53■□□□□ 0.72
CBX4O00257 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC19.53■□□□□ 0.72
CBX4O00257 OTOP2-201ENST00000331427 2147 ntAPPRIS P1 TSL 5 BASIC19.53■□□□□ 0.72
CBX4O00257 MDK-201ENST00000359803 985 ntAPPRIS P2 TSL 2 BASIC19.53■□□□□ 0.72
CBX4O00257 PRR31-201ENST00000371629 978 ntTSL 2 BASIC19.53■□□□□ 0.72
CBX4O00257 AC009487.1-202ENST00000437683 402 ntTSL 2 BASIC19.53■□□□□ 0.72
CBX4O00257 AL365259.1-203ENST00000451660 707 ntTSL 3 BASIC19.53■□□□□ 0.72
CBX4O00257 ROPN1L-202ENST00000503804 1291 ntAPPRIS P1 TSL 2 BASIC19.53■□□□□ 0.72
CBX4O00257 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC19.53■□□□□ 0.72
CBX4O00257 ITGB7-209ENST00000550743 2138 ntTSL 5 BASIC19.53■□□□□ 0.72
CBX4O00257 CKBP1-201ENST00000565489 1086 ntBASIC19.53■□□□□ 0.72
CBX4O00257 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC19.53■□□□□ 0.72
CBX4O00257 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC19.53■□□□□ 0.72
CBX4O00257 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CBX4O00257 MACROD2-201ENST00000217246 4994 ntAPPRIS P1 TSL 2 BASIC19.53■□□□□ 0.72
CBX4O00257 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CBX4O00257 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC19.53■□□□□ 0.72
CBX4O00257 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC19.53■□□□□ 0.72
CBX4O00257 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
CBX4O00257 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC19.52■□□□□ 0.72
CBX4O00257 ALDOA-212ENST00000564546 2104 ntAPPRIS P2 TSL 1 (best) BASIC19.52■□□□□ 0.72
CBX4O00257 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC19.52■□□□□ 0.72
CBX4O00257 IL17C-201ENST00000244241 1044 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
CBX4O00257 PTCRA-201ENST00000304672 1080 ntAPPRIS P3 TSL 1 (best) BASIC19.52■□□□□ 0.72
CBX4O00257 AC093620.1-201ENST00000342963 583 ntTSL 3 BASIC19.52■□□□□ 0.72
CBX4O00257 AL050404.1-201ENST00000424566 802 ntTSL 2 BASIC19.52■□□□□ 0.72
CBX4O00257 AL954642.1-201ENST00000428088 538 ntTSL 3 BASIC19.52■□□□□ 0.72
CBX4O00257 TSPY23P-201ENST00000440136 739 ntBASIC19.52■□□□□ 0.72
CBX4O00257 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
CBX4O00257 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
CBX4O00257 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
CBX4O00257 PRSS44-201ENST00000515154 1146 ntBASIC19.52■□□□□ 0.72
CBX4O00257 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC19.52■□□□□ 0.72
CBX4O00257 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC19.52■□□□□ 0.72
CBX4O00257 C2orf69P3-201ENST00000565542 1120 ntBASIC19.52■□□□□ 0.72
CBX4O00257 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
CBX4O00257 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC19.52■□□□□ 0.71
CBX4O00257 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
CBX4O00257 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC19.52■□□□□ 0.71
CBX4O00257 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC19.52■□□□□ 0.71
CBX4O00257 PCID2-202ENST00000337344 1898 ntAPPRIS P1 TSL 2 BASIC19.52■□□□□ 0.71
CBX4O00257 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC19.52■□□□□ 0.71
CBX4O00257 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC19.52■□□□□ 0.71
CBX4O00257 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
CBX4O00257 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC19.51■□□□□ 0.71
CBX4O00257 CYP2E1-205ENST00000463117 1912 ntAPPRIS P1 TSL 5 BASIC19.51■□□□□ 0.71
CBX4O00257 PTPRE-201ENST00000254667 5331 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
CBX4O00257 AUTS2-201ENST00000342771 6173 ntAPPRIS P3 TSL 1 (best) BASIC19.51■□□□□ 0.71
CBX4O00257 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
CBX4O00257 FAM182B-202ENST00000376404 456 ntAPPRIS ALT2 BASIC19.51■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 25.5 ms