Protein–RNA interactions for Protein: H3BMG3

SMKR1, Small lysine-rich protein 1, humanhuman

Predictions only

Length 65 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMKR1H3BMG3 P2RX2-204ENST00000351222 1140 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
SMKR1H3BMG3 ASMT-202ENST00000381233 989 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
SMKR1H3BMG3 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
SMKR1H3BMG3 AL731577.2-201ENST00000508096 555 ntTSL 2 BASIC13.99□□□□□ -0.17
SMKR1H3BMG3 AP006621.1-202ENST00000528982 464 ntTSL 2 BASIC13.99□□□□□ -0.17
SMKR1H3BMG3 RHOF-204ENST00000537265 699 ntTSL 2 BASIC13.99□□□□□ -0.17
SMKR1H3BMG3 TRAF7-203ENST00000565383 799 ntTSL 5 BASIC13.99□□□□□ -0.17
SMKR1H3BMG3 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC13.99□□□□□ -0.17
SMKR1H3BMG3 PCDHA8-202ENST00000531613 5260 ntAPPRIS P2 TSL 1 (best) BASIC13.99□□□□□ -0.17
SMKR1H3BMG3 POLI-207ENST00000579434 2705 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
SMKR1H3BMG3 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC13.99□□□□□ -0.17
SMKR1H3BMG3 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC13.99□□□□□ -0.17
SMKR1H3BMG3 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC13.99□□□□□ -0.17
SMKR1H3BMG3 CDC123-201ENST00000281141 1542 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
SMKR1H3BMG3 KLHL35-201ENST00000376292 1500 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
SMKR1H3BMG3 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC13.99□□□□□ -0.17
SMKR1H3BMG3 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC13.99□□□□□ -0.17
SMKR1H3BMG3 PCCA-202ENST00000376285 2494 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
SMKR1H3BMG3 KCNB1-203ENST00000635465 4114 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
SMKR1H3BMG3 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
SMKR1H3BMG3 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC13.99□□□□□ -0.17
SMKR1H3BMG3 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC13.99□□□□□ -0.17
SMKR1H3BMG3 ARHGEF19-201ENST00000270747 3029 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
SMKR1H3BMG3 CCNI2-201ENST00000378731 2355 ntAPPRIS P3 TSL 1 (best) BASIC13.98□□□□□ -0.17
SMKR1H3BMG3 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC13.98□□□□□ -0.17
SMKR1H3BMG3 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC13.98□□□□□ -0.17
SMKR1H3BMG3 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC13.98□□□□□ -0.17
SMKR1H3BMG3 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC13.98□□□□□ -0.17
SMKR1H3BMG3 NFATC4-228ENST00000556759 2025 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
SMKR1H3BMG3 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
SMKR1H3BMG3 ADNP2-201ENST00000262198 5393 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
SMKR1H3BMG3 RARRES1-201ENST00000237696 1952 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
SMKR1H3BMG3 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
SMKR1H3BMG3 BAZ1B-201ENST00000339594 6102 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
SMKR1H3BMG3 MLXIP-201ENST00000319080 8427 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
SMKR1H3BMG3 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC13.98□□□□□ -0.17
SMKR1H3BMG3 MYH14-203ENST00000425460 6811 ntAPPRIS P3 TSL 5 BASIC13.98□□□□□ -0.17
SMKR1H3BMG3 OSBPL1A-204ENST00000399443 3317 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
SMKR1H3BMG3 TCF3-204ENST00000453954 3585 ntTSL 5 BASIC13.98□□□□□ -0.17
SMKR1H3BMG3 EFNA2-201ENST00000215368 949 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
SMKR1H3BMG3 NDUFS3-201ENST00000263774 958 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
SMKR1H3BMG3 ACYP2-201ENST00000303536 789 ntTSL 2 BASIC13.98□□□□□ -0.17
SMKR1H3BMG3 OTOP2-201ENST00000331427 2147 ntAPPRIS P1 TSL 5 BASIC13.98□□□□□ -0.17
SMKR1H3BMG3 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC13.98□□□□□ -0.17
SMKR1H3BMG3 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC13.98□□□□□ -0.17
SMKR1H3BMG3 CDKN2AIPNL-201ENST00000395009 800 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
SMKR1H3BMG3 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
SMKR1H3BMG3 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
SMKR1H3BMG3 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC13.98□□□□□ -0.17
SMKR1H3BMG3 AC106820.5-201ENST00000566085 789 ntTSL 3 BASIC13.98□□□□□ -0.17
SMKR1H3BMG3 TERF1P2-201ENST00000583350 1212 ntBASIC13.98□□□□□ -0.17
SMKR1H3BMG3 HSD17B14-204ENST00000599157 991 ntTSL 3 BASIC13.98□□□□□ -0.17
SMKR1H3BMG3 AC093762.3-201ENST00000641918 318 ntAPPRIS P1 BASIC13.98□□□□□ -0.17
SMKR1H3BMG3 ITSN2-201ENST00000355123 6300 ntAPPRIS P4 TSL 1 (best) BASIC13.98□□□□□ -0.17
SMKR1H3BMG3 MADD-208ENST00000405573 1823 ntTSL 5 BASIC13.98□□□□□ -0.17
SMKR1H3BMG3 IRX1P1-201ENST00000438849 1838 ntBASIC13.98□□□□□ -0.17
SMKR1H3BMG3 RASSF1-210ENST00000616212 1842 ntTSL 2 BASIC13.98□□□□□ -0.17
SMKR1H3BMG3 CMPK2-201ENST00000256722 2884 ntAPPRIS P3 TSL 1 (best) BASIC13.98□□□□□ -0.17
SMKR1H3BMG3 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
SMKR1H3BMG3 TP73-AS1-203ENST00000423764 2875 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
SMKR1H3BMG3 GAS7-205ENST00000542249 1799 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
SMKR1H3BMG3 BIRC8-201ENST00000426466 2026 ntAPPRIS P1 BASIC13.98□□□□□ -0.17
SMKR1H3BMG3 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
SMKR1H3BMG3 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC13.98□□□□□ -0.17
SMKR1H3BMG3 LEF1-203ENST00000438313 1488 ntAPPRIS ALT1 TSL 1 (best) BASIC13.98□□□□□ -0.17
SMKR1H3BMG3 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC13.98□□□□□ -0.17
SMKR1H3BMG3 ZNF354C-201ENST00000315475 5411 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
SMKR1H3BMG3 TSPAN3-201ENST00000267970 6467 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
SMKR1H3BMG3 SCARB2-223ENST00000640640 4608 ntTSL 5 BASIC13.98□□□□□ -0.17
SMKR1H3BMG3 FAM135A-205ENST00000418814 6415 ntTSL 5 BASIC13.98□□□□□ -0.17
SMKR1H3BMG3 ENTPD8-202ENST00000371506 2222 ntAPPRIS P1 TSL 5 BASIC13.98□□□□□ -0.17
SMKR1H3BMG3 GSDMD-206ENST00000526406 2496 ntAPPRIS P2 TSL 2 BASIC13.98□□□□□ -0.17
SMKR1H3BMG3 PTPRF-209ENST00000438120 6377 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
SMKR1H3BMG3 AC139713.2-201ENST00000641328 2723 ntBASIC13.98□□□□□ -0.17
SMKR1H3BMG3 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC13.98□□□□□ -0.17
SMKR1H3BMG3 C9orf66-201ENST00000382387 2918 ntAPPRIS P1 BASIC13.97□□□□□ -0.17
SMKR1H3BMG3 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC13.97□□□□□ -0.17
SMKR1H3BMG3 FBXL15-201ENST00000224862 2362 ntAPPRIS P2 TSL 1 (best) BASIC13.97□□□□□ -0.17
SMKR1H3BMG3 PTGIR-201ENST00000291294 2107 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
SMKR1H3BMG3 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
SMKR1H3BMG3 SLC38A11-203ENST00000409149 1621 ntAPPRIS P2 TSL 2 BASIC13.97□□□□□ -0.17
SMKR1H3BMG3 DND1-201ENST00000542735 1605 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
SMKR1H3BMG3 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC13.97□□□□□ -0.17
SMKR1H3BMG3 SAMD11-216ENST00000620200 1874 ntTSL 5 BASIC13.97□□□□□ -0.17
SMKR1H3BMG3 REPS2-201ENST00000303843 7771 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
SMKR1H3BMG3 WIPF1-206ENST00000409891 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
SMKR1H3BMG3 ATXN7L2-202ENST00000369870 2318 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
SMKR1H3BMG3 CDC25A-201ENST00000302506 3783 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
SMKR1H3BMG3 ASPHD1-201ENST00000308748 1584 ntAPPRIS P2 TSL 1 (best) BASIC13.97□□□□□ -0.17
SMKR1H3BMG3 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC13.97□□□□□ -0.17
SMKR1H3BMG3 IL15-201ENST00000296545 2472 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
SMKR1H3BMG3 HEG1-201ENST00000311127 9156 ntAPPRIS P1 TSL 5 BASIC13.97□□□□□ -0.17
SMKR1H3BMG3 COX20-201ENST00000366528 568 ntTSL 2 BASIC13.97□□□□□ -0.17
SMKR1H3BMG3 AP001160.5-201ENST00000636508 485 ntAPPRIS P1 BASIC13.97□□□□□ -0.17
SMKR1H3BMG3 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
SMKR1H3BMG3 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC13.97□□□□□ -0.17
SMKR1H3BMG3 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC13.97□□□□□ -0.17
SMKR1H3BMG3 TSSK6-201ENST00000585580 1467 ntAPPRIS P1 BASIC13.97□□□□□ -0.17
SMKR1H3BMG3 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC13.97□□□□□ -0.17
SMKR1H3BMG3 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC13.97□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 29.1 ms