Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 CCDC37-AS1-202ENST00000506660 986 ntTSL 1 (best) BASIC24.68■■□□□ 1.54
PCDHGA1Q9Y5H4 RAB4B-203ENST00000594800 1173 ntAPPRIS P1 TSL 5 BASIC24.68■■□□□ 1.54
PCDHGA1Q9Y5H4 SLC9A3-AS1-207ENST00000607286 1357 ntTSL 5 BASIC24.67■■□□□ 1.54
PCDHGA1Q9Y5H4 MZT2B-201ENST00000281871 933 ntAPPRIS P3 TSL 1 (best) BASIC24.66■■□□□ 1.54
PCDHGA1Q9Y5H4 MZT2A-201ENST00000309451 624 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
PCDHGA1Q9Y5H4 PLEKHJ1-204ENST00000586608 935 ntTSL 3 BASIC24.66■■□□□ 1.54
PCDHGA1Q9Y5H4 FCGRT-217ENST00000599988 660 ntTSL 5 BASIC24.66■■□□□ 1.54
PCDHGA1Q9Y5H4 C14orf80-203ENST00000354560 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC24.66■■□□□ 1.54
PCDHGA1Q9Y5H4 ZNF470-206ENST00000601902 1640 ntTSL 1 (best) BASIC24.65■■□□□ 1.54
PCDHGA1Q9Y5H4 PGM5-201ENST00000396392 1782 ntTSL 1 (best) BASIC24.65■■□□□ 1.54
PCDHGA1Q9Y5H4 GUK1-208ENST00000366728 842 ntTSL 2 BASIC24.65■■□□□ 1.54
PCDHGA1Q9Y5H4 MAP4K3-211ENST00000484274 407 ntTSL 2 BASIC24.65■■□□□ 1.54
PCDHGA1Q9Y5H4 PEX7-203ENST00000541292 945 ntTSL 5 BASIC24.65■■□□□ 1.54
PCDHGA1Q9Y5H4 TAZ-201ENST00000369776 1596 ntTSL 1 (best) BASIC24.64■■□□□ 1.54
PCDHGA1Q9Y5H4 CMPK2-203ENST00000458098 1224 ntTSL 1 (best) BASIC24.64■■□□□ 1.54
PCDHGA1Q9Y5H4 DSG2-202ENST00000585206 1081 ntTSL 2 BASIC24.64■■□□□ 1.54
PCDHGA1Q9Y5H4 HNRNPAB-205ENST00000506259 1674 ntAPPRIS ALT2 TSL 1 (best) BASIC24.64■■□□□ 1.53
PCDHGA1Q9Y5H4 DCDC2C-201ENST00000399143 1476 ntAPPRIS P1 TSL 5 BASIC24.64■■□□□ 1.53
PCDHGA1Q9Y5H4 CSPG5-205ENST00000610462 2073 ntTSL 5 BASIC24.63■■□□□ 1.53
PCDHGA1Q9Y5H4 RAB26-201ENST00000210187 1675 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
PCDHGA1Q9Y5H4 KMT2E-AS1-201ENST00000453677 736 ntTSL 3 BASIC24.63■■□□□ 1.53
PCDHGA1Q9Y5H4 AC107214.1-201ENST00000457303 559 ntTSL 1 (best) BASIC24.63■■□□□ 1.53
PCDHGA1Q9Y5H4 ELK4-201ENST00000289703 2118 ntTSL 1 (best) BASIC24.62■■□□□ 1.53
PCDHGA1Q9Y5H4 C19orf12-207ENST00000592153 1504 ntTSL 1 (best) BASIC24.62■■□□□ 1.53
PCDHGA1Q9Y5H4 PPP1R14A-201ENST00000301242 777 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
PCDHGA1Q9Y5H4 KLF16-204ENST00000617223 1133 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
PCDHGA1Q9Y5H4 CRELD2-203ENST00000404488 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC24.61■■□□□ 1.53
PCDHGA1Q9Y5H4 UBAC1-201ENST00000371756 1867 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
PCDHGA1Q9Y5H4 TPRG1L-202ENST00000378344 2414 ntAPPRIS P1 TSL 2 BASIC24.61■■□□□ 1.53
PCDHGA1Q9Y5H4 IZUMO4-202ENST00000395301 1021 ntAPPRIS ALT2 TSL 1 (best) BASIC24.6■■□□□ 1.53
PCDHGA1Q9Y5H4 RARRES2P1-201ENST00000474487 481 ntBASIC24.6■■□□□ 1.53
PCDHGA1Q9Y5H4 PRRX2-201ENST00000372469 1311 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
PCDHGA1Q9Y5H4 HAUS7-201ENST00000370210 1593 ntAPPRIS ALT2 TSL 2 BASIC24.59■■□□□ 1.53
PCDHGA1Q9Y5H4 GNG10-201ENST00000374293 1491 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
PCDHGA1Q9Y5H4 FSD1L-208ENST00000495708 1906 ntTSL 1 (best) BASIC24.59■■□□□ 1.53
PCDHGA1Q9Y5H4 G6PC3-201ENST00000269097 1533 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.53
PCDHGA1Q9Y5H4 OVOL2-201ENST00000278780 1555 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.52
PCDHGA1Q9Y5H4 TRIOBP-205ENST00000407319 2125 ntAPPRIS P3 TSL 1 (best) BASIC24.58■■□□□ 1.52
PCDHGA1Q9Y5H4 MEST-211ENST00000437945 1455 ntTSL 5 BASIC24.58■■□□□ 1.52
PCDHGA1Q9Y5H4 FAM222B-205ENST00000577682 549 ntTSL 4 BASIC24.57■■□□□ 1.52
PCDHGA1Q9Y5H4 MKRN1-202ENST00000443720 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC24.57■■□□□ 1.52
PCDHGA1Q9Y5H4 GRASP-201ENST00000293662 1933 ntAPPRIS P1 TSL 1 (best) BASIC24.57■■□□□ 1.52
PCDHGA1Q9Y5H4 PDXP-201ENST00000215904 2010 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.52
PCDHGA1Q9Y5H4 PSMG4-207ENST00000451246 824 ntTSL 3 BASIC24.56■■□□□ 1.52
PCDHGA1Q9Y5H4 TNFRSF12A-201ENST00000326577 1033 ntAPPRIS P1 TSL 1 (best) BASIC24.55■■□□□ 1.52
PCDHGA1Q9Y5H4 C20orf24-201ENST00000342422 896 ntTSL 2 BASIC24.55■■□□□ 1.52
PCDHGA1Q9Y5H4 C20orf24-202ENST00000344795 1114 ntAPPRIS P1 TSL 1 (best) BASIC24.55■■□□□ 1.52
PCDHGA1Q9Y5H4 LOR-201ENST00000368742 1230 ntAPPRIS P1 TSL 1 (best) BASIC24.55■■□□□ 1.52
PCDHGA1Q9Y5H4 LYSMD2-202ENST00000454181 1228 ntTSL 1 (best) BASIC24.55■■□□□ 1.52
PCDHGA1Q9Y5H4 AC138207.2-201ENST00000583377 492 ntTSL 2 BASIC24.55■■□□□ 1.52
PCDHGA1Q9Y5H4 RASL10A-202ENST00000401450 1720 ntTSL 2 BASIC24.55■■□□□ 1.52
PCDHGA1Q9Y5H4 WDR86-204ENST00000477459 1428 ntTSL 2 BASIC24.54■■□□□ 1.52
PCDHGA1Q9Y5H4 UBP1-201ENST00000283628 2074 ntAPPRIS P3 TSL 2 BASIC24.54■■□□□ 1.52
PCDHGA1Q9Y5H4 OXLD1-201ENST00000374741 620 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
PCDHGA1Q9Y5H4 SPATA33-209ENST00000579310 1490 ntAPPRIS ALT2 TSL 2 BASIC24.53■■□□□ 1.52
PCDHGA1Q9Y5H4 MKNK2-202ENST00000309340 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC24.53■■□□□ 1.52
PCDHGA1Q9Y5H4 AL135925.1-201ENST00000605920 1701 ntBASIC24.53■■□□□ 1.52
PCDHGA1Q9Y5H4 C1orf232-201ENST00000634842 643 ntAPPRIS P5 TSL 5 BASIC24.53■■□□□ 1.52
PCDHGA1Q9Y5H4 ST7-208ENST00000393451 2110 ntAPPRIS P1 TSL 1 (best) BASIC24.53■■□□□ 1.52
PCDHGA1Q9Y5H4 SLC35D2-201ENST00000253270 1613 ntAPPRIS P1 TSL 1 (best) BASIC24.53■■□□□ 1.52
PCDHGA1Q9Y5H4 MAPK3-203ENST00000395199 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC24.52■■□□□ 1.52
PCDHGA1Q9Y5H4 MIR1-1HG-202ENST00000624914 1220 ntTSL 1 (best) BASIC24.52■■□□□ 1.52
PCDHGA1Q9Y5H4 PANK2-207ENST00000610179 1807 ntAPPRIS ALT2 TSL 1 (best) BASIC24.51■■□□□ 1.51
PCDHGA1Q9Y5H4 MORF4L1-203ENST00000426013 1880 ntAPPRIS P1 TSL 1 (best) BASIC24.5■■□□□ 1.51
PCDHGA1Q9Y5H4 IFI30-201ENST00000407280 1134 ntAPPRIS P1 TSL 1 (best) BASIC24.5■■□□□ 1.51
PCDHGA1Q9Y5H4 LYPD6B-204ENST00000409876 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC24.5■■□□□ 1.51
PCDHGA1Q9Y5H4 MED25-210ENST00000612854 801 ntTSL 5 BASIC24.5■■□□□ 1.51
PCDHGA1Q9Y5H4 MOB2-207ENST00000614710 705 ntTSL 5 BASIC24.5■■□□□ 1.51
PCDHGA1Q9Y5H4 MED25-213ENST00000620467 1293 ntTSL 1 (best) BASIC24.5■■□□□ 1.51
PCDHGA1Q9Y5H4 MED25-214ENST00000622402 642 ntTSL 5 BASIC24.5■■□□□ 1.51
PCDHGA1Q9Y5H4 ZDHHC3-203ENST00000342790 1336 ntTSL 5 BASIC24.5■■□□□ 1.51
PCDHGA1Q9Y5H4 REST-210ENST00000638187 1334 ntTSL 5 BASIC24.5■■□□□ 1.51
PCDHGA1Q9Y5H4 ARL6IP4-208ENST00000439686 796 ntAPPRIS ALT2 TSL 3 BASIC24.49■■□□□ 1.51
PCDHGA1Q9Y5H4 AL157400.5-201ENST00000507624 621 ntBASIC24.49■■□□□ 1.51
PCDHGA1Q9Y5H4 UBE2I-213ENST00000566587 1098 ntAPPRIS P1 TSL 2 BASIC24.49■■□□□ 1.51
PCDHGA1Q9Y5H4 FOXO6-202ENST00000641094 1476 ntAPPRIS P1 BASIC24.49■■□□□ 1.51
PCDHGA1Q9Y5H4 SOD3-201ENST00000382120 1526 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
PCDHGA1Q9Y5H4 MAZ-205ENST00000562337 1574 ntTSL 3 BASIC24.49■■□□□ 1.51
PCDHGA1Q9Y5H4 POU3F1-201ENST00000373012 2184 ntAPPRIS P1 BASIC24.48■■□□□ 1.51
PCDHGA1Q9Y5H4 VIPR2-204ENST00000421760 717 ntTSL 3 BASIC24.48■■□□□ 1.51
PCDHGA1Q9Y5H4 C16orf52-207ENST00000569656 1257 ntTSL 5 BASIC24.48■■□□□ 1.51
PCDHGA1Q9Y5H4 AC007029.1-201ENST00000604183 313 ntBASIC24.48■■□□□ 1.51
PCDHGA1Q9Y5H4 ATXN3-252ENST00000620536 1044 ntTSL 5 BASIC24.48■■□□□ 1.51
PCDHGA1Q9Y5H4 ATXN3-253ENST00000621269 936 ntTSL 5 BASIC24.48■■□□□ 1.51
PCDHGA1Q9Y5H4 AC129492.7-201ENST00000622992 756 ntBASIC24.48■■□□□ 1.51
PCDHGA1Q9Y5H4 FTCD-203ENST00000397746 1878 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
PCDHGA1Q9Y5H4 LTC4S-205ENST00000486713 496 ntTSL 2 BASIC24.47■■□□□ 1.51
PCDHGA1Q9Y5H4 RUNX2-205ENST00000465038 1770 ntAPPRIS P4 TSL 5 BASIC24.46■■□□□ 1.51
PCDHGA1Q9Y5H4 SERP2-201ENST00000379179 784 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
PCDHGA1Q9Y5H4 SEC11C-204ENST00000587834 1202 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
PCDHGA1Q9Y5H4 FAM78B-201ENST00000338353 1597 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
PCDHGA1Q9Y5H4 TMEM150A-202ENST00000334462 1518 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
PCDHGA1Q9Y5H4 ILDR2-208ENST00000529387 1238 ntTSL 5 BASIC24.44■■□□□ 1.5
PCDHGA1Q9Y5H4 EID2-201ENST00000390658 1629 ntAPPRIS P1 BASIC24.43■■□□□ 1.5
PCDHGA1Q9Y5H4 COPRS-201ENST00000302362 968 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
PCDHGA1Q9Y5H4 RSPO4-202ENST00000400634 722 ntTSL 1 (best) BASIC24.43■■□□□ 1.5
PCDHGA1Q9Y5H4 FLVCR1-AS1-203ENST00000426161 892 ntTSL 1 (best) BASIC24.43■■□□□ 1.5
PCDHGA1Q9Y5H4 CIB2-201ENST00000258930 1598 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
PCDHGA1Q9Y5H4 HES4-204ENST00000484667 667 ntTSL 3 BASIC24.42■■□□□ 1.5
PCDHGA1Q9Y5H4 KCNG2-201ENST00000316249 1401 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
Retrieved 100 of 98,524 protein–RNA pairs in 138.7 ms