Protein–RNA interactions for Protein: Q9H9J4

USP42, Ubiquitin carboxyl-terminal hydrolase 42, humanhuman

Known RBP Predictions only

Length 1,324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP42Q9H9J4 EIF5A-202ENST00000336458 1511 ntAPPRIS P1 TSL 1 (best) BASIC32.77■■■□□ 2.84
USP42Q9H9J4 HSD11B1L-202ENST00000339423 1660 ntAPPRIS P3 TSL 1 (best) BASIC32.76■■■□□ 2.83
USP42Q9H9J4 FTCD-204ENST00000397748 1955 ntTSL 1 (best) BASIC32.75■■■□□ 2.83
USP42Q9H9J4 GRK6-206ENST00000507633 1660 ntTSL 5 BASIC32.75■■■□□ 2.83
USP42Q9H9J4 HYI-213ENST00000583037 1322 ntTSL 5 BASIC32.74■■■□□ 2.83
USP42Q9H9J4 MRPL23-202ENST00000381519 643 ntAPPRIS P1 TSL 3 BASIC32.73■■■□□ 2.83
USP42Q9H9J4 MRPL23-205ENST00000397298 736 ntAPPRIS P1 TSL 1 (best) BASIC32.73■■■□□ 2.83
USP42Q9H9J4 AL590677.1-201ENST00000438431 380 ntTSL 5 BASIC32.73■■■□□ 2.83
USP42Q9H9J4 C9orf50-201ENST00000372478 1620 ntAPPRIS P2 TSL 2 BASIC32.72■■■□□ 2.83
USP42Q9H9J4 AC110285.7-201ENST00000624417 1536 ntBASIC32.72■■■□□ 2.83
USP42Q9H9J4 FGF13-AS1-202ENST00000446383 584 ntTSL 3 BASIC32.71■■■□□ 2.83
USP42Q9H9J4 TTC39C-209ENST00000584250 1048 ntTSL 1 (best) BASIC32.71■■■□□ 2.83
USP42Q9H9J4 LACTBL1-202ENST00000618559 1500 ntAPPRIS ALT2 TSL 5 BASIC32.7■■■□□ 2.83
USP42Q9H9J4 NPC2-207ENST00000555619 1035 ntAPPRIS P2 TSL 1 (best) BASIC32.7■■■□□ 2.82
USP42Q9H9J4 UPF3A-209ENST00000492270 494 ntTSL 2 BASIC32.69■■■□□ 2.82
USP42Q9H9J4 GXYLT1-201ENST00000280876 1937 ntAPPRIS ALT2 TSL 1 (best) BASIC32.68■■■□□ 2.82
USP42Q9H9J4 CAPNS1-216ENST00000628306 1389 ntTSL 5 BASIC32.68■■■□□ 2.82
USP42Q9H9J4 ENDOG-201ENST00000372642 1172 ntAPPRIS P1 TSL 1 (best) BASIC32.67■■■□□ 2.82
USP42Q9H9J4 C20orf24-203ENST00000373852 1059 ntTSL 1 (best) BASIC32.67■■■□□ 2.82
USP42Q9H9J4 SH3GL3-202ENST00000427482 1806 ntAPPRIS P1 TSL 1 (best) BASIC32.67■■■□□ 2.82
USP42Q9H9J4 MXD3-208ENST00000513063 861 ntAPPRIS P1 TSL 5 BASIC32.66■■■□□ 2.82
USP42Q9H9J4 YBX2-201ENST00000007699 1590 ntAPPRIS P1 TSL 1 (best) BASIC32.65■■■□□ 2.82
USP42Q9H9J4 CHPT1-205ENST00000549872 2001 ntAPPRIS ALT2 TSL 5 BASIC32.65■■■□□ 2.82
USP42Q9H9J4 BTBD19-201ENST00000409335 1214 ntTSL 5 BASIC32.65■■■□□ 2.82
USP42Q9H9J4 GFER-205ENST00000569451 517 ntTSL 5 BASIC32.64■■■□□ 2.82
USP42Q9H9J4 AC092296.2-201ENST00000589470 999 ntBASIC32.64■■■□□ 2.82
USP42Q9H9J4 QDPR-208ENST00000513615 1188 ntTSL 2 BASIC32.63■■■□□ 2.81
USP42Q9H9J4 RPS2-210ENST00000530225 765 ntTSL 2 BASIC32.63■■■□□ 2.81
USP42Q9H9J4 SH3BP2-221ENST00000511747 2351 ntAPPRIS P3 TSL 1 (best) BASIC32.63■■■□□ 2.81
USP42Q9H9J4 PGM5-201ENST00000396392 1782 ntTSL 1 (best) BASIC32.62■■■□□ 2.81
USP42Q9H9J4 C1QTNF8-201ENST00000328449 1627 ntAPPRIS P1 TSL 5 BASIC32.62■■■□□ 2.81
USP42Q9H9J4 EPB41L4A-AS2-201ENST00000623705 1396 ntBASIC32.62■■■□□ 2.81
USP42Q9H9J4 TMEM158-201ENST00000503771 1813 ntAPPRIS P1 BASIC32.62■■■□□ 2.81
USP42Q9H9J4 MAPK8IP1P1-201ENST00000574657 1439 ntBASIC32.61■■■□□ 2.81
USP42Q9H9J4 KRT18P60-201ENST00000312876 1297 ntBASIC32.61■■■□□ 2.81
USP42Q9H9J4 PLEKHJ1-204ENST00000586608 935 ntTSL 3 BASIC32.61■■■□□ 2.81
USP42Q9H9J4 RAB26-201ENST00000210187 1675 ntAPPRIS P1 TSL 1 (best) BASIC32.61■■■□□ 2.81
USP42Q9H9J4 CDC34-201ENST00000215574 1471 ntAPPRIS P1 TSL 1 (best) BASIC32.61■■■□□ 2.81
USP42Q9H9J4 LSM6-202ENST00000502781 1352 ntAPPRIS P1 TSL 1 (best) BASIC32.6■■■□□ 2.81
USP42Q9H9J4 KCTD15-206ENST00000588881 1211 ntAPPRIS P1 TSL 2 BASIC32.6■■■□□ 2.81
USP42Q9H9J4 HOMER3-202ENST00000392351 1557 ntAPPRIS P3 TSL 1 (best) BASIC32.6■■■□□ 2.81
USP42Q9H9J4 MIR219A2-201ENST00000608502 1504 ntBASIC32.6■■■□□ 2.81
USP42Q9H9J4 TPM2-203ENST00000378292 2147 ntAPPRIS ALT1 TSL 1 (best) BASIC32.6■■■□□ 2.81
USP42Q9H9J4 LINC01770-201ENST00000417917 634 ntTSL 2 BASIC32.59■■■□□ 2.81
USP42Q9H9J4 TBX2-AS1-202ENST00000589814 539 ntTSL 3 BASIC32.59■■■□□ 2.81
USP42Q9H9J4 HNRNPAB-205ENST00000506259 1674 ntAPPRIS ALT2 TSL 1 (best) BASIC32.57■■■□□ 2.8
USP42Q9H9J4 TSPY13P-201ENST00000338964 914 ntBASIC32.56■■■□□ 2.8
USP42Q9H9J4 AQP1-203ENST00000409899 1009 ntTSL 1 (best) BASIC32.55■■■□□ 2.8
USP42Q9H9J4 AL135925.1-201ENST00000605920 1701 ntBASIC32.55■■■□□ 2.8
USP42Q9H9J4 GAL3ST3-203ENST00000527878 1599 ntAPPRIS P1 TSL 1 (best) BASIC32.55■■■□□ 2.8
USP42Q9H9J4 MCCD1-201ENST00000376191 955 ntAPPRIS P1 TSL 1 (best) BASIC32.54■■■□□ 2.8
USP42Q9H9J4 AC004987.1-201ENST00000428627 508 ntBASIC32.54■■■□□ 2.8
USP42Q9H9J4 CCDC37-AS1-202ENST00000506660 986 ntTSL 1 (best) BASIC32.54■■■□□ 2.8
USP42Q9H9J4 PEX7-203ENST00000541292 945 ntTSL 5 BASIC32.54■■■□□ 2.8
USP42Q9H9J4 ZMYND19-201ENST00000298585 1375 ntAPPRIS P1 TSL 1 (best) BASIC32.54■■■□□ 2.8
USP42Q9H9J4 UBAC1-201ENST00000371756 1867 ntAPPRIS P1 TSL 1 (best) BASIC32.54■■■□□ 2.8
USP42Q9H9J4 GPR137-202ENST00000377702 1478 ntTSL 1 (best) BASIC32.54■■■□□ 2.8
USP42Q9H9J4 FSD1L-208ENST00000495708 1906 ntTSL 1 (best) BASIC32.54■■■□□ 2.8
USP42Q9H9J4 MZT2B-201ENST00000281871 933 ntAPPRIS P3 TSL 1 (best) BASIC32.53■■■□□ 2.8
USP42Q9H9J4 MZT2A-201ENST00000309451 624 ntAPPRIS P1 TSL 1 (best) BASIC32.53■■■□□ 2.8
USP42Q9H9J4 NKX2-1-204ENST00000522719 1417 ntAPPRIS P1 TSL 1 (best) BASIC32.53■■■□□ 2.8
USP42Q9H9J4 ZNF470-206ENST00000601902 1640 ntTSL 1 (best) BASIC32.53■■■□□ 2.8
USP42Q9H9J4 FCGRT-217ENST00000599988 660 ntTSL 5 BASIC32.52■■■□□ 2.8
USP42Q9H9J4 LDB1-202ENST00000425280 2089 ntTSL 5 BASIC32.52■■■□□ 2.8
USP42Q9H9J4 ATP5G2P3-201ENST00000429083 425 ntBASIC32.51■■■□□ 2.8
USP42Q9H9J4 MAP4K3-211ENST00000484274 407 ntTSL 2 BASIC32.51■■■□□ 2.8
USP42Q9H9J4 SAP25-204ENST00000622764 1031 ntAPPRIS ALT2 TSL 5 BASIC32.51■■■□□ 2.8
USP42Q9H9J4 DCDC2C-201ENST00000399143 1476 ntAPPRIS P1 TSL 5 BASIC32.51■■■□□ 2.8
USP42Q9H9J4 KCNF1-201ENST00000295082 2289 ntAPPRIS P1 BASIC32.51■■■□□ 2.79
USP42Q9H9J4 AGAP3-216ENST00000479901 1881 ntTSL 5 BASIC32.51■■■□□ 2.79
USP42Q9H9J4 RAB4B-203ENST00000594800 1173 ntAPPRIS P1 TSL 5 BASIC32.51■■■□□ 2.79
USP42Q9H9J4 G6PC3-201ENST00000269097 1533 ntAPPRIS P1 TSL 1 (best) BASIC32.5■■■□□ 2.79
USP42Q9H9J4 ST7-AS1-201ENST00000456775 1889 ntBASIC32.5■■■□□ 2.79
USP42Q9H9J4 PRRX2-201ENST00000372469 1311 ntAPPRIS P1 TSL 1 (best) BASIC32.5■■■□□ 2.79
USP42Q9H9J4 LRRC10B-201ENST00000378075 2219 ntAPPRIS P1 BASIC32.5■■■□□ 2.79
USP42Q9H9J4 SLC9A3-AS1-207ENST00000607286 1357 ntTSL 5 BASIC32.5■■■□□ 2.79
USP42Q9H9J4 ARL8A-201ENST00000272217 1793 ntAPPRIS P1 TSL 1 (best) BASIC32.49■■■□□ 2.79
USP42Q9H9J4 COL13A1-210ENST00000517713 2007 ntAPPRIS ALT2 TSL 5 BASIC32.49■■■□□ 2.79
USP42Q9H9J4 OVOL2-201ENST00000278780 1555 ntAPPRIS P1 TSL 1 (best) BASIC32.49■■■□□ 2.79
USP42Q9H9J4 ECEL1P2-201ENST00000461596 1295 ntBASIC32.49■■■□□ 2.79
USP42Q9H9J4 C1orf232-201ENST00000634842 643 ntAPPRIS P5 TSL 5 BASIC32.49■■■□□ 2.79
USP42Q9H9J4 TSPAN33-201ENST00000486685 1863 ntAPPRIS P1 TSL 1 (best) BASIC32.48■■■□□ 2.79
USP42Q9H9J4 GLTP-201ENST00000318348 2356 ntAPPRIS P1 TSL 1 (best) BASIC32.48■■■□□ 2.79
USP42Q9H9J4 HOMER3-207ENST00000594794 903 ntTSL 5 BASIC32.48■■■□□ 2.79
USP42Q9H9J4 TAZ-201ENST00000369776 1596 ntTSL 1 (best) BASIC32.48■■■□□ 2.79
USP42Q9H9J4 C14orf80-203ENST00000354560 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC32.47■■■□□ 2.79
USP42Q9H9J4 GNAS-AS1_1.1-201ENST00000621898 103 ntBASIC32.47■■■□□ 2.79
USP42Q9H9J4 GNG10-201ENST00000374293 1491 ntAPPRIS P1 TSL 1 (best) BASIC32.46■■■□□ 2.79
USP42Q9H9J4 HAUS7-201ENST00000370210 1593 ntAPPRIS ALT2 TSL 2 BASIC32.46■■■□□ 2.79
USP42Q9H9J4 GUK1-208ENST00000366728 842 ntTSL 2 BASIC32.46■■■□□ 2.79
USP42Q9H9J4 CMPK2-203ENST00000458098 1224 ntTSL 1 (best) BASIC32.46■■■□□ 2.79
USP42Q9H9J4 GAL3ST1-205ENST00000406361 1819 ntAPPRIS P1 TSL 2 BASIC32.45■■■□□ 2.79
USP42Q9H9J4 FOXO6-202ENST00000641094 1476 ntAPPRIS P1 BASIC32.45■■■□□ 2.78
USP42Q9H9J4 OPRD1-202ENST00000621425 1217 ntTSL 1 (best) BASIC32.45■■■□□ 2.78
USP42Q9H9J4 RASL10A-202ENST00000401450 1720 ntTSL 2 BASIC32.45■■■□□ 2.78
USP42Q9H9J4 CRELD2-203ENST00000404488 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC32.44■■■□□ 2.78
USP42Q9H9J4 PPP1R14A-201ENST00000301242 777 ntAPPRIS P1 TSL 1 (best) BASIC32.44■■■□□ 2.78
USP42Q9H9J4 PSMG4-207ENST00000451246 824 ntTSL 3 BASIC32.44■■■□□ 2.78
USP42Q9H9J4 AC107214.1-201ENST00000457303 559 ntTSL 1 (best) BASIC32.44■■■□□ 2.78
USP42Q9H9J4 DSG2-202ENST00000585206 1081 ntTSL 2 BASIC32.44■■■□□ 2.78
Retrieved 100 of 98,524 protein–RNA pairs in 8.9 ms