Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 GPX1-201ENST00000419349 1106 ntBASIC29.32■■■□□ 2.28
SH3RF1Q7Z6J0 MYLIP-202ENST00000356840 1666 ntAPPRIS P1 TSL 1 (best) BASIC29.31■■■□□ 2.28
SH3RF1Q7Z6J0 UBA52-204ENST00000595158 743 ntAPPRIS P1 TSL 3 BASIC29.31■■■□□ 2.28
SH3RF1Q7Z6J0 RCC1L-201ENST00000610322 2300 ntAPPRIS P1 TSL 1 (best) BASIC29.31■■■□□ 2.28
SH3RF1Q7Z6J0 THAP11-201ENST00000303596 2114 ntAPPRIS P1 BASIC29.3■■■□□ 2.28
SH3RF1Q7Z6J0 CTXN1-201ENST00000318978 1274 ntAPPRIS P1 TSL 1 (best) BASIC29.3■■■□□ 2.28
SH3RF1Q7Z6J0 MARCH11-201ENST00000332432 1741 ntAPPRIS P1 TSL 5 BASIC29.3■■■□□ 2.28
SH3RF1Q7Z6J0 ADAP1-201ENST00000265846 2363 ntAPPRIS P1 TSL 1 (best) BASIC29.28■■■□□ 2.28
SH3RF1Q7Z6J0 SHARPIN-202ENST00000398712 1765 ntAPPRIS P1 TSL 1 (best) BASIC29.28■■■□□ 2.28
SH3RF1Q7Z6J0 IGFBP2-201ENST00000233809 1439 ntAPPRIS P1 TSL 1 (best) BASIC29.28■■■□□ 2.28
SH3RF1Q7Z6J0 BATF3-201ENST00000243440 980 ntAPPRIS P1 TSL 1 (best) BASIC29.27■■■□□ 2.28
SH3RF1Q7Z6J0 MAPK3-205ENST00000395202 1008 ntTSL 1 (best) BASIC29.27■■■□□ 2.28
SH3RF1Q7Z6J0 EI24-212ENST00000615917 1407 ntTSL 2 BASIC29.27■■■□□ 2.28
SH3RF1Q7Z6J0 PLSCR3-209ENST00000574401 2032 ntAPPRIS P1 TSL 1 (best) BASIC29.27■■■□□ 2.28
SH3RF1Q7Z6J0 ZFAND2B-208ENST00000409594 2021 ntTSL 2 BASIC29.26■■■□□ 2.27
SH3RF1Q7Z6J0 RUNX2-211ENST00000625924 1458 ntAPPRIS ALT2 TSL 1 (best) BASIC29.25■■■□□ 2.27
SH3RF1Q7Z6J0 WSB2-201ENST00000315436 2646 ntAPPRIS P1 TSL 1 (best) BASIC29.24■■■□□ 2.27
SH3RF1Q7Z6J0 WHRN-203ENST00000374057 1718 ntTSL 2 BASIC29.24■■■□□ 2.27
SH3RF1Q7Z6J0 CAPNS1-201ENST00000246533 1918 ntAPPRIS P2 TSL 1 (best) BASIC29.24■■■□□ 2.27
SH3RF1Q7Z6J0 CBWD5-202ENST00000377384 1347 ntTSL 1 (best) BASIC29.23■■■□□ 2.27
SH3RF1Q7Z6J0 RNF126P1-201ENST00000567452 1320 ntBASIC29.23■■■□□ 2.27
SH3RF1Q7Z6J0 ENKD1-201ENST00000243878 1579 ntAPPRIS P1 TSL 1 (best) BASIC29.23■■■□□ 2.27
SH3RF1Q7Z6J0 AC092902.2-221ENST00000628476 965 ntTSL 5 BASIC29.23■■■□□ 2.27
SH3RF1Q7Z6J0 ACTR3B-201ENST00000256001 2216 ntAPPRIS P1 TSL 1 (best) BASIC29.22■■■□□ 2.27
SH3RF1Q7Z6J0 SSTR4-201ENST00000255008 1427 ntAPPRIS P1 BASIC29.22■■■□□ 2.27
SH3RF1Q7Z6J0 ATP8B2-201ENST00000368487 1523 ntTSL 1 (best) BASIC29.22■■■□□ 2.27
SH3RF1Q7Z6J0 NEURL1B-203ENST00000522853 1263 ntTSL 1 (best) BASIC29.21■■■□□ 2.27
SH3RF1Q7Z6J0 GRK6-206ENST00000507633 1660 ntTSL 5 BASIC29.21■■■□□ 2.27
SH3RF1Q7Z6J0 HNRNPAB-204ENST00000504898 1785 ntAPPRIS P4 TSL 1 (best) BASIC29.21■■■□□ 2.27
SH3RF1Q7Z6J0 DCUN1D5-201ENST00000260247 1337 ntAPPRIS P1 TSL 1 (best) BASIC29.2■■■□□ 2.27
SH3RF1Q7Z6J0 MTCH1-201ENST00000373616 2006 ntTSL 1 (best) BASIC29.2■■■□□ 2.27
SH3RF1Q7Z6J0 TPT1-202ENST00000379055 948 ntTSL 2 BASIC29.2■■■□□ 2.26
SH3RF1Q7Z6J0 AC005540.1-201ENST00000413911 919 ntTSL 3 BASIC29.2■■■□□ 2.26
SH3RF1Q7Z6J0 CHST11-202ENST00000546689 756 ntTSL 2 BASIC29.2■■■□□ 2.26
SH3RF1Q7Z6J0 MAP3K8-203ENST00000375322 932 ntTSL 2 BASIC29.19■■■□□ 2.26
SH3RF1Q7Z6J0 BLOC1S3-202ENST00000587722 732 ntAPPRIS P1 BASIC29.19■■■□□ 2.26
SH3RF1Q7Z6J0 EMID1-203ENST00000404820 2118 ntTSL 5 BASIC29.17■■■□□ 2.26
SH3RF1Q7Z6J0 TSPOAP1-AS1-203ENST00000579527 2042 ntTSL 2 BASIC29.17■■■□□ 2.26
SH3RF1Q7Z6J0 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC29.17■■■□□ 2.26
SH3RF1Q7Z6J0 CLTA-207ENST00000470744 1102 ntTSL 2 BASIC29.17■■■□□ 2.26
SH3RF1Q7Z6J0 AMZ2-201ENST00000359783 1722 ntTSL 5 BASIC29.17■■■□□ 2.26
SH3RF1Q7Z6J0 AP002884.3-203ENST00000419895 1711 ntTSL 2 BASIC29.17■■■□□ 2.26
SH3RF1Q7Z6J0 GPR75-ASB3-201ENST00000406625 2113 ntAPPRIS P1 TSL 2 BASIC29.17■■■□□ 2.26
SH3RF1Q7Z6J0 SMARCD3-203ENST00000392811 2018 ntTSL 1 (best) BASIC29.16■■■□□ 2.26
SH3RF1Q7Z6J0 AC142086.6-201ENST00000621154 1765 ntBASIC29.16■■■□□ 2.26
SH3RF1Q7Z6J0 BANF1-208ENST00000533166 1135 ntAPPRIS P1 TSL 2 BASIC29.16■■■□□ 2.26
SH3RF1Q7Z6J0 TOMM40-201ENST00000252487 1707 ntAPPRIS P2 TSL 1 (best) BASIC29.15■■■□□ 2.26
SH3RF1Q7Z6J0 TOMM40-202ENST00000405636 1709 ntAPPRIS P2 TSL 1 (best) BASIC29.15■■■□□ 2.26
SH3RF1Q7Z6J0 TNFSF12-201ENST00000293825 1553 ntAPPRIS P1 TSL 1 (best) BASIC29.15■■■□□ 2.26
SH3RF1Q7Z6J0 DRD5P2-201ENST00000421395 2012 ntBASIC29.15■■■□□ 2.26
SH3RF1Q7Z6J0 CHST14-202ENST00000559991 1968 ntTSL 5 BASIC29.14■■■□□ 2.26
SH3RF1Q7Z6J0 CEP120-209ENST00000515110 606 ntTSL 3 BASIC29.14■■■□□ 2.26
SH3RF1Q7Z6J0 PLSCR3-202ENST00000535512 2067 ntAPPRIS P1 TSL 1 (best) BASIC29.14■■■□□ 2.25
SH3RF1Q7Z6J0 BMP7-204ENST00000450594 1857 ntTSL 2 BASIC29.13■■■□□ 2.25
SH3RF1Q7Z6J0 CDKN3-202ENST00000335183 893 ntAPPRIS P2 TSL 1 (best) BASIC29.13■■■□□ 2.25
SH3RF1Q7Z6J0 CDKN3-211ENST00000611205 874 ntAPPRIS ALT2 TSL 5 BASIC29.13■■■□□ 2.25
SH3RF1Q7Z6J0 COL13A1-203ENST00000398969 2267 ntAPPRIS ALT2 TSL 5 BASIC29.13■■■□□ 2.25
SH3RF1Q7Z6J0 AC073111.5-206ENST00000642087 859 ntAPPRIS P1 BASIC29.12■■■□□ 2.25
SH3RF1Q7Z6J0 CLK2-201ENST00000355560 2120 ntAPPRIS ALT1 TSL 5 BASIC29.12■■■□□ 2.25
SH3RF1Q7Z6J0 LACTB-201ENST00000261893 1972 ntAPPRIS P1 TSL 1 (best) BASIC29.12■■■□□ 2.25
SH3RF1Q7Z6J0 EBAG9-202ENST00000395785 1467 ntAPPRIS P1 TSL 1 (best) BASIC29.11■■■□□ 2.25
SH3RF1Q7Z6J0 FAAH-201ENST00000243167 2094 ntAPPRIS P1 TSL 1 (best) BASIC29.11■■■□□ 2.25
SH3RF1Q7Z6J0 PPP1CC-208ENST00000551676 1581 ntTSL 2 BASIC29.11■■■□□ 2.25
SH3RF1Q7Z6J0 RPRML-201ENST00000322329 1093 ntAPPRIS P1 BASIC29.11■■■□□ 2.25
SH3RF1Q7Z6J0 SDCCAG3-201ENST00000298537 2314 ntTSL 1 (best) BASIC29.1■■■□□ 2.25
SH3RF1Q7Z6J0 RAD51-210ENST00000557850 1397 ntTSL 2 BASIC29.09■■■□□ 2.25
SH3RF1Q7Z6J0 MNX1-201ENST00000252971 2174 ntAPPRIS P3 TSL 1 (best) BASIC29.09■■■□□ 2.25
SH3RF1Q7Z6J0 AP003068.2-202ENST00000526623 1662 ntTSL 2 BASIC29.09■■■□□ 2.25
SH3RF1Q7Z6J0 ARPC5L-202ENST00000353214 2507 ntAPPRIS P1 TSL 2 BASIC29.08■■■□□ 2.25
SH3RF1Q7Z6J0 TNFRSF25-204ENST00000356876 1625 ntAPPRIS ALT2 TSL 1 (best) BASIC29.08■■■□□ 2.25
SH3RF1Q7Z6J0 FAM168B-201ENST00000389915 944 ntAPPRIS P1 TSL 3 BASIC29.07■■■□□ 2.24
SH3RF1Q7Z6J0 AGO3-204ENST00000397828 1035 ntTSL 2 BASIC29.07■■■□□ 2.24
SH3RF1Q7Z6J0 AC127502.1-201ENST00000399971 1502 ntBASIC29.07■■■□□ 2.24
SH3RF1Q7Z6J0 NTF6A-201ENST00000591175 560 ntBASIC29.07■■■□□ 2.24
SH3RF1Q7Z6J0 TMEM251-202ENST00000415050 1303 ntTSL 2 BASIC29.06■■■□□ 2.24
SH3RF1Q7Z6J0 COMMD7-201ENST00000278980 1900 ntAPPRIS P3 TSL 1 (best) BASIC29.06■■■□□ 2.24
SH3RF1Q7Z6J0 RAB40C-201ENST00000248139 2699 ntAPPRIS P1 TSL 1 (best) BASIC29.06■■■□□ 2.24
SH3RF1Q7Z6J0 LINC02323-201ENST00000559946 1603 ntTSL 3 BASIC29.05■■■□□ 2.24
SH3RF1Q7Z6J0 SMDT1-201ENST00000331479 1567 ntAPPRIS P1 TSL 1 (best) BASIC29.05■■■□□ 2.24
SH3RF1Q7Z6J0 AP004833.2-201ENST00000532228 1454 ntBASIC29.04■■■□□ 2.24
SH3RF1Q7Z6J0 MORF4L1-203ENST00000426013 1880 ntAPPRIS P1 TSL 1 (best) BASIC29.04■■■□□ 2.24
SH3RF1Q7Z6J0 CCDC160-202ENST00000517294 1790 ntAPPRIS P1 TSL 5 BASIC29.04■■■□□ 2.24
SH3RF1Q7Z6J0 PTCH1-210ENST00000468211 1254 ntTSL 1 (best) BASIC29.04■■■□□ 2.24
SH3RF1Q7Z6J0 MDFIC-208ENST00000614186 1068 ntTSL 1 (best) BASIC29.04■■■□□ 2.24
SH3RF1Q7Z6J0 AC012354.3-201ENST00000623734 483 ntBASIC29.04■■■□□ 2.24
SH3RF1Q7Z6J0 ZIC2-201ENST00000376335 2983 ntAPPRIS P1 TSL 1 (best) BASIC29.04■■■□□ 2.24
SH3RF1Q7Z6J0 NFYB-205ENST00000551727 1727 ntAPPRIS P1 TSL 3 BASIC29.03■■■□□ 2.24
SH3RF1Q7Z6J0 KANSL1L-207ENST00000452086 2334 ntTSL 1 (best) BASIC29.03■■■□□ 2.24
SH3RF1Q7Z6J0 ZNF775-201ENST00000329630 2257 ntAPPRIS P1 TSL 1 (best) BASIC29.02■■■□□ 2.24
SH3RF1Q7Z6J0 PRELID2-207ENST00000511435 1894 ntAPPRIS ALT1 TSL 2 BASIC29.02■■■□□ 2.24
SH3RF1Q7Z6J0 COQ2-202ENST00000311469 1641 ntAPPRIS P2 TSL 1 (best) BASIC29.02■■■□□ 2.24
SH3RF1Q7Z6J0 KIF13A-207ENST00000502704 1330 ntTSL 1 (best) BASIC29.01■■■□□ 2.23
SH3RF1Q7Z6J0 ZDHHC16-201ENST00000345745 1519 ntTSL 1 (best) BASIC29.01■■■□□ 2.23
SH3RF1Q7Z6J0 FAM117A-201ENST00000240364 2365 ntAPPRIS P2 TSL 1 (best) BASIC29.01■■■□□ 2.23
SH3RF1Q7Z6J0 C1orf122-201ENST00000373042 973 ntAPPRIS P3 TSL 1 (best) BASIC29.01■■■□□ 2.23
SH3RF1Q7Z6J0 LIME1-206ENST00000487026 805 ntAPPRIS ALT2 TSL 5 BASIC29.01■■■□□ 2.23
SH3RF1Q7Z6J0 HNRNPUL1-221ENST00000617305 1018 ntTSL 1 (best) BASIC29.01■■■□□ 2.23
SH3RF1Q7Z6J0 SLC16A11-201ENST00000308009 1803 ntAPPRIS P2 TSL 1 (best) BASIC29.01■■■□□ 2.23
SH3RF1Q7Z6J0 S1PR4-201ENST00000246115 1565 ntAPPRIS P1 BASIC29.01■■■□□ 2.23
SH3RF1Q7Z6J0 MPP6-203ENST00000409761 1703 ntTSL 5 BASIC29■■■□□ 2.23
Retrieved 100 of 98,524 protein–RNA pairs in 10.9 ms