Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 AL451085.2-201ENST00000605085 799 ntBASIC31.69■■■□□ 2.66
CCDC88AQ3V6T2 KCNK3-202ENST00000620977 1956 ntTSL 1 (best) BASIC31.68■■■□□ 2.66
CCDC88AQ3V6T2 STUB1-205ENST00000565677 1560 ntTSL 1 (best) BASIC31.67■■■□□ 2.66
CCDC88AQ3V6T2 KLF16-204ENST00000617223 1133 ntAPPRIS P1 TSL 1 (best) BASIC31.67■■■□□ 2.66
CCDC88AQ3V6T2 TPRA1-201ENST00000296210 1725 ntTSL 1 (best) BASIC31.66■■■□□ 2.66
CCDC88AQ3V6T2 UBP1-201ENST00000283628 2074 ntAPPRIS P3 TSL 2 BASIC31.66■■■□□ 2.66
CCDC88AQ3V6T2 GNAS-AS1_1.1-201ENST00000621898 103 ntBASIC31.66■■■□□ 2.66
CCDC88AQ3V6T2 G6PC3-201ENST00000269097 1533 ntAPPRIS P1 TSL 1 (best) BASIC31.66■■■□□ 2.66
CCDC88AQ3V6T2 LACTBL1-202ENST00000618559 1500 ntAPPRIS ALT2 TSL 5 BASIC31.66■■■□□ 2.66
CCDC88AQ3V6T2 LAGE3-201ENST00000357360 949 ntAPPRIS P1 TSL 1 (best) BASIC31.65■■■□□ 2.66
CCDC88AQ3V6T2 COQ2-202ENST00000311469 1641 ntAPPRIS P2 TSL 1 (best) BASIC31.65■■■□□ 2.66
CCDC88AQ3V6T2 MAPK12-201ENST00000215659 1918 ntAPPRIS P1 TSL 1 (best) BASIC31.65■■■□□ 2.66
CCDC88AQ3V6T2 GSX2-202ENST00000503800 1181 ntTSL 5 BASIC31.65■■■□□ 2.66
CCDC88AQ3V6T2 PPP1R14A-201ENST00000301242 777 ntAPPRIS P1 TSL 1 (best) BASIC31.63■■■□□ 2.65
CCDC88AQ3V6T2 LRRC61-202ENST00000359623 1877 ntAPPRIS P1 TSL 2 BASIC31.63■■■□□ 2.65
CCDC88AQ3V6T2 SSTR5-201ENST00000293897 1362 ntAPPRIS P1 BASIC31.63■■■□□ 2.65
CCDC88AQ3V6T2 LOR-201ENST00000368742 1230 ntAPPRIS P1 TSL 1 (best) BASIC31.63■■■□□ 2.65
CCDC88AQ3V6T2 MCCD1-201ENST00000376191 955 ntAPPRIS P1 TSL 1 (best) BASIC31.63■■■□□ 2.65
CCDC88AQ3V6T2 KLHL35-204ENST00000539798 1936 ntAPPRIS P1 TSL 1 (best) BASIC31.62■■■□□ 2.65
CCDC88AQ3V6T2 AQP1-203ENST00000409899 1009 ntTSL 1 (best) BASIC31.62■■■□□ 2.65
CCDC88AQ3V6T2 CHPT1-205ENST00000549872 2001 ntAPPRIS ALT2 TSL 5 BASIC31.62■■■□□ 2.65
CCDC88AQ3V6T2 MAP4K3-211ENST00000484274 407 ntTSL 2 BASIC31.61■■■□□ 2.65
CCDC88AQ3V6T2 HES4-204ENST00000484667 667 ntTSL 3 BASIC31.61■■■□□ 2.65
CCDC88AQ3V6T2 MOB2-207ENST00000614710 705 ntTSL 5 BASIC31.61■■■□□ 2.65
CCDC88AQ3V6T2 AL592295.1-201ENST00000400984 884 ntBASIC31.6■■■□□ 2.65
CCDC88AQ3V6T2 AL121899.1-202ENST00000411839 536 ntTSL 5 BASIC31.6■■■□□ 2.65
CCDC88AQ3V6T2 TNFRSF12A-201ENST00000326577 1033 ntAPPRIS P1 TSL 1 (best) BASIC31.59■■■□□ 2.65
CCDC88AQ3V6T2 SERP2-201ENST00000379179 784 ntAPPRIS P1 TSL 1 (best) BASIC31.59■■■□□ 2.65
CCDC88AQ3V6T2 IFI30-201ENST00000407280 1134 ntAPPRIS P1 TSL 1 (best) BASIC31.59■■■□□ 2.65
CCDC88AQ3V6T2 LYSMD2-202ENST00000454181 1228 ntTSL 1 (best) BASIC31.59■■■□□ 2.65
CCDC88AQ3V6T2 HAUS7-201ENST00000370210 1593 ntAPPRIS ALT2 TSL 2 BASIC31.59■■■□□ 2.65
CCDC88AQ3V6T2 SOD3-201ENST00000382120 1526 ntAPPRIS P1 TSL 1 (best) BASIC31.59■■■□□ 2.65
CCDC88AQ3V6T2 ATP11B-209ENST00000493826 963 ntTSL 1 (best) BASIC31.59■■■□□ 2.65
CCDC88AQ3V6T2 TOMM40-201ENST00000252487 1707 ntAPPRIS P2 TSL 1 (best) BASIC31.58■■■□□ 2.65
CCDC88AQ3V6T2 TOMM40-202ENST00000405636 1709 ntAPPRIS P2 TSL 1 (best) BASIC31.58■■■□□ 2.65
CCDC88AQ3V6T2 GNG10-201ENST00000374293 1491 ntAPPRIS P1 TSL 1 (best) BASIC31.58■■■□□ 2.65
CCDC88AQ3V6T2 FOXD3-201ENST00000371116 2086 ntAPPRIS P1 BASIC31.58■■■□□ 2.65
CCDC88AQ3V6T2 PEX7-203ENST00000541292 945 ntTSL 5 BASIC31.57■■■□□ 2.64
CCDC88AQ3V6T2 SLC9A3-AS1-207ENST00000607286 1357 ntTSL 5 BASIC31.57■■■□□ 2.64
CCDC88AQ3V6T2 MAPK9-202ENST00000347470 1509 ntTSL 5 BASIC31.57■■■□□ 2.64
CCDC88AQ3V6T2 HSD11B1L-202ENST00000339423 1660 ntAPPRIS P3 TSL 1 (best) BASIC31.56■■■□□ 2.64
CCDC88AQ3V6T2 RAB26-201ENST00000210187 1675 ntAPPRIS P1 TSL 1 (best) BASIC31.56■■■□□ 2.64
CCDC88AQ3V6T2 HOMER3-202ENST00000392351 1557 ntAPPRIS P3 TSL 1 (best) BASIC31.56■■■□□ 2.64
CCDC88AQ3V6T2 KRTAP5-5-201ENST00000399676 933 ntAPPRIS P1 BASIC31.56■■■□□ 2.64
CCDC88AQ3V6T2 HOXD8-201ENST00000313173 1917 ntAPPRIS P3 TSL 2 BASIC31.55■■■□□ 2.64
CCDC88AQ3V6T2 AL135925.1-201ENST00000605920 1701 ntBASIC31.55■■■□□ 2.64
CCDC88AQ3V6T2 PYY2-202ENST00000441253 1076 ntTSL 1 (best) BASIC31.55■■■□□ 2.64
CCDC88AQ3V6T2 AC016910.1-201ENST00000422799 1046 ntTSL 1 (best) BASIC31.55■■■□□ 2.64
CCDC88AQ3V6T2 PSMG4-207ENST00000451246 824 ntTSL 3 BASIC31.55■■■□□ 2.64
CCDC88AQ3V6T2 SH3GL3-202ENST00000427482 1806 ntAPPRIS P1 TSL 1 (best) BASIC31.54■■■□□ 2.64
CCDC88AQ3V6T2 FSD1L-204ENST00000469022 1836 ntTSL 1 (best) BASIC31.54■■■□□ 2.64
CCDC88AQ3V6T2 PGM5-201ENST00000396392 1782 ntTSL 1 (best) BASIC31.54■■■□□ 2.64
CCDC88AQ3V6T2 MIR219A2-201ENST00000608502 1504 ntBASIC31.54■■■□□ 2.64
CCDC88AQ3V6T2 TRIR-205ENST00000592273 783 ntTSL 3 BASIC31.53■■■□□ 2.64
CCDC88AQ3V6T2 TRIOBP-205ENST00000407319 2125 ntAPPRIS P3 TSL 1 (best) BASIC31.53■■■□□ 2.64
CCDC88AQ3V6T2 AC064853.2-201ENST00000641246 144 ntAPPRIS P1 BASIC31.52■■■□□ 2.64
CCDC88AQ3V6T2 ANGPTL6-201ENST00000253109 1900 ntAPPRIS P1 TSL 1 (best) BASIC31.52■■■□□ 2.64
CCDC88AQ3V6T2 AL157400.5-201ENST00000507624 621 ntBASIC31.52■■■□□ 2.64
CCDC88AQ3V6T2 HSPE1-201ENST00000233893 950 ntAPPRIS P1 TSL 1 (best) BASIC31.51■■■□□ 2.63
CCDC88AQ3V6T2 TXNL4A-208ENST00000588162 752 ntTSL 2 BASIC31.51■■■□□ 2.63
CCDC88AQ3V6T2 NRG3-203ENST00000404547 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC31.51■■■□□ 2.63
CCDC88AQ3V6T2 EPB41L4A-AS2-201ENST00000623705 1396 ntBASIC31.51■■■□□ 2.63
CCDC88AQ3V6T2 MAFA-201ENST00000333480 2347 ntAPPRIS P1 BASIC31.51■■■□□ 2.63
CCDC88AQ3V6T2 UBE2I-213ENST00000566587 1098 ntAPPRIS P1 TSL 2 BASIC31.5■■■□□ 2.63
CCDC88AQ3V6T2 GAL3ST3-203ENST00000527878 1599 ntAPPRIS P1 TSL 1 (best) BASIC31.5■■■□□ 2.63
CCDC88AQ3V6T2 MTURN-203ENST00000409688 843 ntTSL 2 BASIC31.5■■■□□ 2.63
CCDC88AQ3V6T2 RPS2-210ENST00000530225 765 ntTSL 2 BASIC31.5■■■□□ 2.63
CCDC88AQ3V6T2 CDC34-201ENST00000215574 1471 ntAPPRIS P1 TSL 1 (best) BASIC31.49■■■□□ 2.63
CCDC88AQ3V6T2 MAPK3-203ENST00000395199 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC31.49■■■□□ 2.63
CCDC88AQ3V6T2 AC129492.7-201ENST00000622992 756 ntBASIC31.49■■■□□ 2.63
CCDC88AQ3V6T2 MKNK2-202ENST00000309340 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC31.49■■■□□ 2.63
CCDC88AQ3V6T2 IZUMO4-202ENST00000395301 1021 ntAPPRIS ALT2 TSL 1 (best) BASIC31.48■■■□□ 2.63
CCDC88AQ3V6T2 LYPD6B-204ENST00000409876 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC31.48■■■□□ 2.63
CCDC88AQ3V6T2 AL035685.1-201ENST00000636663 812 ntBASIC31.48■■■□□ 2.63
CCDC88AQ3V6T2 GRK6-206ENST00000507633 1660 ntTSL 5 BASIC31.48■■■□□ 2.63
CCDC88AQ3V6T2 MIF-201ENST00000215754 939 ntAPPRIS P1 TSL 1 (best) BASIC31.48■■■□□ 2.63
CCDC88AQ3V6T2 CMPK2-203ENST00000458098 1224 ntTSL 1 (best) BASIC31.47■■■□□ 2.63
CCDC88AQ3V6T2 SHC2-201ENST00000264554 2494 ntAPPRIS P1 TSL 1 (best) BASIC31.47■■■□□ 2.63
CCDC88AQ3V6T2 MAPK8IP1P1-201ENST00000574657 1439 ntBASIC31.46■■■□□ 2.63
CCDC88AQ3V6T2 AC148477.1-201ENST00000537720 476 ntTSL 3 BASIC31.46■■■□□ 2.63
CCDC88AQ3V6T2 C19orf12-207ENST00000592153 1504 ntTSL 1 (best) BASIC31.45■■■□□ 2.62
CCDC88AQ3V6T2 TAZ-201ENST00000369776 1596 ntTSL 1 (best) BASIC31.44■■■□□ 2.62
CCDC88AQ3V6T2 RSPO4-202ENST00000400634 722 ntTSL 1 (best) BASIC31.44■■■□□ 2.62
CCDC88AQ3V6T2 AL592293.1-201ENST00000502889 1188 ntBASIC31.44■■■□□ 2.62
CCDC88AQ3V6T2 DCDC2C-201ENST00000399143 1476 ntAPPRIS P1 TSL 5 BASIC31.44■■■□□ 2.62
CCDC88AQ3V6T2 GPR137-202ENST00000377702 1478 ntTSL 1 (best) BASIC31.42■■■□□ 2.62
CCDC88AQ3V6T2 RAB32-201ENST00000367495 1217 ntAPPRIS P1 TSL 1 (best) BASIC31.42■■■□□ 2.62
CCDC88AQ3V6T2 OVOL2-201ENST00000278780 1555 ntAPPRIS P1 TSL 1 (best) BASIC31.42■■■□□ 2.62
CCDC88AQ3V6T2 MARCKSL1-201ENST00000329421 1699 ntAPPRIS P1 TSL 1 (best) BASIC31.41■■■□□ 2.62
CCDC88AQ3V6T2 AC110285.7-201ENST00000624417 1536 ntBASIC31.41■■■□□ 2.62
CCDC88AQ3V6T2 AC090241.2-201ENST00000602329 432 ntTSL 4 BASIC31.41■■■□□ 2.62
CCDC88AQ3V6T2 OPRD1-202ENST00000621425 1217 ntTSL 1 (best) BASIC31.41■■■□□ 2.62
CCDC88AQ3V6T2 MBOAT7-202ENST00000338624 2076 ntTSL 2 BASIC31.41■■■□□ 2.62
CCDC88AQ3V6T2 SPATA33-209ENST00000579310 1490 ntAPPRIS ALT2 TSL 2 BASIC31.41■■■□□ 2.62
CCDC88AQ3V6T2 GXYLT1-201ENST00000280876 1937 ntAPPRIS ALT2 TSL 1 (best) BASIC31.41■■■□□ 2.62
CCDC88AQ3V6T2 ANAPC13-201ENST00000354910 1209 ntAPPRIS P1 TSL 1 (best) BASIC31.4■■■□□ 2.62
CCDC88AQ3V6T2 LSM6-202ENST00000502781 1352 ntAPPRIS P1 TSL 1 (best) BASIC31.39■■■□□ 2.62
CCDC88AQ3V6T2 PROSER2-202ENST00000379200 1232 ntAPPRIS ALT2 BASIC31.39■■■□□ 2.62
CCDC88AQ3V6T2 ATXN3-252ENST00000620536 1044 ntTSL 5 BASIC31.39■■■□□ 2.62
CCDC88AQ3V6T2 ATXN3-253ENST00000621269 936 ntTSL 5 BASIC31.39■■■□□ 2.62
Retrieved 100 of 98,524 protein–RNA pairs in 49.8 ms