Protein–RNA interactions for Protein: P58872

RHBDL3, Rhomboid-related protein 3, humanhuman

Predictions only

Length 404 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RHBDL3P58872 CIB2-201ENST00000258930 1598 ntAPPRIS P1 TSL 1 (best) BASIC30.56■■■□□ 2.48
RHBDL3P58872 C14orf80-203ENST00000354560 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC30.56■■■□□ 2.48
RHBDL3P58872 ST7-208ENST00000393451 2110 ntAPPRIS P1 TSL 1 (best) BASIC30.56■■■□□ 2.48
RHBDL3P58872 AC078883.1-202ENST00000450443 1397 ntTSL 3 BASIC30.55■■■□□ 2.48
RHBDL3P58872 TAF10-201ENST00000299424 1215 ntAPPRIS P1 TSL 1 (best) BASIC30.55■■■□□ 2.48
RHBDL3P58872 MDFIC-203ENST00000423503 474 ntTSL 1 (best) BASIC30.55■■■□□ 2.48
RHBDL3P58872 CEP120-209ENST00000515110 606 ntTSL 3 BASIC30.55■■■□□ 2.48
RHBDL3P58872 LACTBL1-202ENST00000618559 1500 ntAPPRIS ALT2 TSL 5 BASIC30.55■■■□□ 2.48
RHBDL3P58872 ATF4-201ENST00000337304 2019 ntAPPRIS P1 TSL 1 (best) BASIC30.54■■■□□ 2.48
RHBDL3P58872 RNF126P1-201ENST00000567452 1320 ntBASIC30.54■■■□□ 2.48
RHBDL3P58872 SSBP3-202ENST00000357475 1533 ntTSL 1 (best) BASIC30.54■■■□□ 2.48
RHBDL3P58872 HOXB3-212ENST00000498678 2196 ntAPPRIS P1 TSL 2 BASIC30.54■■■□□ 2.48
RHBDL3P58872 TMEM114-202ENST00000568335 899 ntTSL 3 BASIC30.54■■■□□ 2.48
RHBDL3P58872 COPZ2-210ENST00000621465 895 ntAPPRIS P1 TSL 1 (best) BASIC30.54■■■□□ 2.48
RHBDL3P58872 AP004833.2-201ENST00000532228 1454 ntBASIC30.54■■■□□ 2.48
RHBDL3P58872 CCDC88C-205ENST00000553403 1651 ntTSL 1 (best) BASIC30.54■■■□□ 2.48
RHBDL3P58872 RPUSD1-208ENST00000567114 1835 ntTSL 2 BASIC30.54■■■□□ 2.48
RHBDL3P58872 TAZ-201ENST00000369776 1596 ntTSL 1 (best) BASIC30.54■■■□□ 2.48
RHBDL3P58872 TMEM150A-202ENST00000334462 1518 ntAPPRIS P1 TSL 1 (best) BASIC30.53■■■□□ 2.48
RHBDL3P58872 RPARP-AS1-205ENST00000596045 431 ntTSL 3 BASIC30.53■■■□□ 2.48
RHBDL3P58872 TSR3-201ENST00000007390 1243 ntAPPRIS P1 TSL 1 (best) BASIC30.53■■■□□ 2.48
RHBDL3P58872 AC027237.3-202ENST00000558617 1778 ntTSL 2 BASIC30.53■■■□□ 2.48
RHBDL3P58872 KLHL21-203ENST00000463043 667 ntTSL 5 BASIC30.52■■■□□ 2.48
RHBDL3P58872 TXNL4A-208ENST00000588162 752 ntTSL 2 BASIC30.52■■■□□ 2.48
RHBDL3P58872 FGF18-201ENST00000274625 1986 ntAPPRIS P1 TSL 1 (best) BASIC30.52■■■□□ 2.48
RHBDL3P58872 NEUROG2-201ENST00000313341 2287 ntAPPRIS P1 TSL 1 (best) BASIC30.52■■■□□ 2.48
RHBDL3P58872 SP8-201ENST00000361443 1714 ntAPPRIS P3 TSL 1 (best) BASIC30.51■■■□□ 2.47
RHBDL3P58872 TXNRD2-204ENST00000400521 2115 ntAPPRIS P2 TSL 1 (best) BASIC30.51■■■□□ 2.47
RHBDL3P58872 HOXD-AS2-201ENST00000426965 927 ntTSL 1 (best) BASIC30.51■■■□□ 2.47
RHBDL3P58872 AC022413.1-201ENST00000624602 984 ntBASIC30.51■■■□□ 2.47
RHBDL3P58872 RBPMS-209ENST00000520161 842 ntTSL 2 BASIC30.5■■■□□ 2.47
RHBDL3P58872 LSM6-202ENST00000502781 1352 ntAPPRIS P1 TSL 1 (best) BASIC30.5■■■□□ 2.47
RHBDL3P58872 ATOH7-201ENST00000373673 1480 ntAPPRIS P1 BASIC30.5■■■□□ 2.47
RHBDL3P58872 AMN-201ENST00000299155 1907 ntAPPRIS P2 TSL 1 (best) BASIC30.49■■■□□ 2.47
RHBDL3P58872 C1orf122-201ENST00000373042 973 ntAPPRIS P3 TSL 1 (best) BASIC30.49■■■□□ 2.47
RHBDL3P58872 AC018755.3-201ENST00000598755 664 ntTSL 2 BASIC30.49■■■□□ 2.47
RHBDL3P58872 AGO3-204ENST00000397828 1035 ntTSL 2 BASIC30.48■■■□□ 2.47
RHBDL3P58872 MIR219A2-201ENST00000608502 1504 ntBASIC30.47■■■□□ 2.47
RHBDL3P58872 CDC34-201ENST00000215574 1471 ntAPPRIS P1 TSL 1 (best) BASIC30.47■■■□□ 2.47
RHBDL3P58872 G6PC3-201ENST00000269097 1533 ntAPPRIS P1 TSL 1 (best) BASIC30.47■■■□□ 2.47
RHBDL3P58872 SSTR4-201ENST00000255008 1427 ntAPPRIS P1 BASIC30.47■■■□□ 2.47
RHBDL3P58872 DNPEP-201ENST00000273075 2425 ntAPPRIS P3 TSL 1 (best) BASIC30.46■■■□□ 2.47
RHBDL3P58872 EPB41L4A-AS2-201ENST00000623705 1396 ntBASIC30.45■■■□□ 2.47
RHBDL3P58872 LDLRAD4-218ENST00000592991 1640 ntTSL 1 (best) BASIC30.45■■■□□ 2.47
RHBDL3P58872 AC100797.4-201ENST00000631653 1827 ntBASIC30.45■■■□□ 2.46
RHBDL3P58872 SPATA33-209ENST00000579310 1490 ntAPPRIS ALT2 TSL 2 BASIC30.43■■■□□ 2.46
RHBDL3P58872 PHF20L1-207ENST00000395379 1998 ntTSL 5 BASIC30.43■■■□□ 2.46
RHBDL3P58872 RPRML-201ENST00000322329 1093 ntAPPRIS P1 BASIC30.42■■■□□ 2.46
RHBDL3P58872 ABHD17AP5-201ENST00000580133 923 ntBASIC30.42■■■□□ 2.46
RHBDL3P58872 AQP1-203ENST00000409899 1009 ntTSL 1 (best) BASIC30.41■■■□□ 2.46
RHBDL3P58872 AC060814.1-201ENST00000554326 538 ntBASIC30.41■■■□□ 2.46
RHBDL3P58872 MPP6-203ENST00000409761 1703 ntTSL 5 BASIC30.41■■■□□ 2.46
RHBDL3P58872 CRELD2-203ENST00000404488 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC30.41■■■□□ 2.46
RHBDL3P58872 CTSZ-201ENST00000217131 1495 ntAPPRIS P1 TSL 1 (best) BASIC30.4■■■□□ 2.46
RHBDL3P58872 ELOC-207ENST00000522337 816 ntAPPRIS P1 TSL 2 BASIC30.4■■■□□ 2.46
RHBDL3P58872 FOXE3-201ENST00000335071 1981 ntAPPRIS P1 BASIC30.4■■■□□ 2.46
RHBDL3P58872 ST7-205ENST00000393446 2114 ntTSL 5 BASIC30.4■■■□□ 2.46
RHBDL3P58872 TTC39C-209ENST00000584250 1048 ntTSL 1 (best) BASIC30.39■■■□□ 2.46
RHBDL3P58872 MDFIC-208ENST00000614186 1068 ntTSL 1 (best) BASIC30.39■■■□□ 2.46
RHBDL3P58872 FKBP1A-205ENST00000439640 1583 ntTSL 3 BASIC30.39■■■□□ 2.46
RHBDL3P58872 SLC15A4-201ENST00000266771 2779 ntAPPRIS P1 TSL 1 (best) BASIC30.39■■■□□ 2.46
RHBDL3P58872 PMS1-220ENST00000618056 1468 ntTSL 5 BASIC30.38■■■□□ 2.45
RHBDL3P58872 AL139393.2-201ENST00000608721 2025 ntBASIC30.37■■■□□ 2.45
RHBDL3P58872 MAPK3-205ENST00000395202 1008 ntTSL 1 (best) BASIC30.37■■■□□ 2.45
RHBDL3P58872 RAD51-210ENST00000557850 1397 ntTSL 2 BASIC30.37■■■□□ 2.45
RHBDL3P58872 GAL3ST3-203ENST00000527878 1599 ntAPPRIS P1 TSL 1 (best) BASIC30.37■■■□□ 2.45
RHBDL3P58872 PPP1CC-208ENST00000551676 1581 ntTSL 2 BASIC30.36■■■□□ 2.45
RHBDL3P58872 KCTD15-206ENST00000588881 1211 ntAPPRIS P1 TSL 2 BASIC30.35■■■□□ 2.45
RHBDL3P58872 SEPT3-203ENST00000396426 2586 ntAPPRIS P4 TSL 1 (best) BASIC30.34■■■□□ 2.45
RHBDL3P58872 SNX15-202ENST00000377244 1939 ntAPPRIS P1 TSL 1 (best) BASIC30.34■■■□□ 2.45
RHBDL3P58872 NRXN1-228ENST00000628364 2444 ntTSL 5 BASIC30.33■■■□□ 2.45
RHBDL3P58872 ARMC10-211ENST00000541300 2266 ntTSL 1 (best) BASIC30.33■■■□□ 2.45
RHBDL3P58872 GADD45A-205ENST00000617962 1142 ntTSL 1 (best) BASIC30.33■■■□□ 2.45
RHBDL3P58872 FOXQ1-201ENST00000296839 2309 ntAPPRIS P1 BASIC30.32■■■□□ 2.44
RHBDL3P58872 HES4-202ENST00000428771 1040 ntTSL 2 BASIC30.32■■■□□ 2.44
RHBDL3P58872 CMPK2-203ENST00000458098 1224 ntTSL 1 (best) BASIC30.32■■■□□ 2.44
RHBDL3P58872 MED25-210ENST00000612854 801 ntTSL 5 BASIC30.32■■■□□ 2.44
RHBDL3P58872 MED25-213ENST00000620467 1293 ntTSL 1 (best) BASIC30.32■■■□□ 2.44
RHBDL3P58872 MED25-214ENST00000622402 642 ntTSL 5 BASIC30.32■■■□□ 2.44
RHBDL3P58872 FHL2-202ENST00000344213 1769 ntTSL 1 (best) BASIC30.32■■■□□ 2.44
RHBDL3P58872 EFNA3-201ENST00000368408 1782 ntAPPRIS P1 TSL 1 (best) BASIC30.31■■■□□ 2.44
RHBDL3P58872 MAP4K3-211ENST00000484274 407 ntTSL 2 BASIC30.31■■■□□ 2.44
RHBDL3P58872 DCBLD1-201ENST00000296955 1979 ntAPPRIS P2 TSL 1 (best) BASIC30.31■■■□□ 2.44
RHBDL3P58872 MYCL-202ENST00000372816 1688 ntAPPRIS P3 TSL 2 BASIC30.3■■■□□ 2.44
RHBDL3P58872 IL17D-201ENST00000304920 1861 ntAPPRIS P1 TSL 1 (best) BASIC30.29■■■□□ 2.44
RHBDL3P58872 ZFAND2B-208ENST00000409594 2021 ntTSL 2 BASIC30.29■■■□□ 2.44
RHBDL3P58872 NPW-202ENST00000566435 991 ntAPPRIS ALT2 TSL 1 (best) BASIC30.29■■■□□ 2.44
RHBDL3P58872 AGAP3-216ENST00000479901 1881 ntTSL 5 BASIC30.29■■■□□ 2.44
RHBDL3P58872 PGM5P2-201ENST00000613141 1980 ntTSL 1 (best) BASIC30.28■■■□□ 2.44
RHBDL3P58872 CGREF1-203ENST00000402394 1906 ntAPPRIS P2 TSL 2 BASIC30.28■■■□□ 2.44
RHBDL3P58872 PXMP2-201ENST00000317479 957 ntAPPRIS P1 TSL 1 (best) BASIC30.28■■■□□ 2.44
RHBDL3P58872 C16orf95-206ENST00000618367 974 ntAPPRIS ALT2 TSL 2 BASIC30.28■■■□□ 2.44
RHBDL3P58872 NRBF2-202ENST00000435510 1816 ntTSL 2 BASIC30.28■■■□□ 2.44
RHBDL3P58872 ABCB10P1-201ENST00000614297 2181 ntBASIC30.28■■■□□ 2.44
RHBDL3P58872 AC092296.2-201ENST00000589470 999 ntBASIC30.27■■■□□ 2.44
RHBDL3P58872 TBX2-AS1-202ENST00000589814 539 ntTSL 3 BASIC30.25■■■□□ 2.43
RHBDL3P58872 PHOX2A-201ENST00000298231 1699 ntAPPRIS P1 TSL 1 (best) BASIC30.25■■■□□ 2.43
RHBDL3P58872 ABCB10P3-201ENST00000561950 2166 ntBASIC30.25■■■□□ 2.43
RHBDL3P58872 SOD3-201ENST00000382120 1526 ntAPPRIS P1 TSL 1 (best) BASIC30.24■■■□□ 2.43
RHBDL3P58872 ST7-202ENST00000323984 2142 ntTSL 5 BASIC30.23■■■□□ 2.43
Retrieved 100 of 98,524 protein–RNA pairs in 80 ms