Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 AQP1-203ENST00000409899 1009 ntTSL 1 (best) BASIC36.08■■■■□ 3.37
MSH6P52701 AL121899.1-202ENST00000411839 536 ntTSL 5 BASIC36.08■■■■□ 3.37
MSH6P52701 MAP4K3-211ENST00000484274 407 ntTSL 2 BASIC36.08■■■■□ 3.37
MSH6P52701 STK25-202ENST00000401869 2251 ntAPPRIS P1 TSL 1 (best) BASIC36.07■■■■□ 3.36
MSH6P52701 MIF-201ENST00000215754 939 ntAPPRIS P1 TSL 1 (best) BASIC36.06■■■■□ 3.36
MSH6P52701 ZNF688-203ENST00000563276 1492 ntTSL 2 BASIC36.06■■■■□ 3.36
MSH6P52701 RPS2-210ENST00000530225 765 ntTSL 2 BASIC36.05■■■■□ 3.36
MSH6P52701 ANAPC13-201ENST00000354910 1209 ntAPPRIS P1 TSL 1 (best) BASIC36.04■■■■□ 3.36
MSH6P52701 GKAP1-203ENST00000376371 1778 ntAPPRIS P1 TSL 1 (best) BASIC36.04■■■■□ 3.36
MSH6P52701 CAPNS1-204ENST00000587718 1558 ntAPPRIS ALT2 TSL 1 (best) BASIC36.04■■■■□ 3.36
MSH6P52701 FAHD1-204ENST00000615972 757 ntTSL 5 BASIC36.03■■■■□ 3.36
MSH6P52701 IZUMO4-202ENST00000395301 1021 ntAPPRIS ALT2 TSL 1 (best) BASIC36.02■■■■□ 3.36
MSH6P52701 SAMD1-202ENST00000533683 2164 ntAPPRIS P5 TSL 1 (best) BASIC36.02■■■■□ 3.36
MSH6P52701 MSX1-201ENST00000382723 1939 ntAPPRIS P1 TSL 1 (best) BASIC36.02■■■■□ 3.36
MSH6P52701 AL161658.1-201ENST00000623641 1967 ntBASIC36.02■■■■□ 3.36
MSH6P52701 ARL8A-204ENST00000614750 1727 ntTSL 3 BASIC36.02■■■■□ 3.36
MSH6P52701 ADAMTS13-203ENST00000371910 1074 ntTSL 1 (best) BASIC36.02■■■■□ 3.36
MSH6P52701 DUX4L18-201ENST00000553347 1267 ntBASIC36.02■■■■□ 3.36
MSH6P52701 PELI3-203ENST00000524466 1671 ntTSL 1 (best) BASIC36.01■■■■□ 3.36
MSH6P52701 C16orf59-202ENST00000483320 1709 ntAPPRIS ALT2 TSL 2 BASIC36.01■■■■□ 3.36
MSH6P52701 TUBB6-201ENST00000317702 2064 ntAPPRIS P1 TSL 1 (best) BASIC36.01■■■■□ 3.36
MSH6P52701 CMPK2-203ENST00000458098 1224 ntTSL 1 (best) BASIC36■■■■□ 3.35
MSH6P52701 TBX2-AS1-203ENST00000590421 861 ntTSL 2 BASIC36■■■■□ 3.35
MSH6P52701 EIF5A-211ENST00000576930 1439 ntAPPRIS P1 TSL 5 BASIC35.99■■■■□ 3.35
MSH6P52701 AC011448.1-201ENST00000555938 1100 ntAPPRIS P1 TSL 2 BASIC35.99■■■■□ 3.35
MSH6P52701 MARCKSL1-201ENST00000329421 1699 ntAPPRIS P1 TSL 1 (best) BASIC35.98■■■■□ 3.35
MSH6P52701 UCK1-201ENST00000372208 2063 ntTSL 1 (best) BASIC35.98■■■■□ 3.35
MSH6P52701 HOMER3-202ENST00000392351 1557 ntAPPRIS P3 TSL 1 (best) BASIC35.98■■■■□ 3.35
MSH6P52701 ARL6IP4-208ENST00000439686 796 ntAPPRIS ALT2 TSL 3 BASIC35.98■■■■□ 3.35
MSH6P52701 SOD3-201ENST00000382120 1526 ntAPPRIS P1 TSL 1 (best) BASIC35.97■■■■□ 3.35
MSH6P52701 MOB2-207ENST00000614710 705 ntTSL 5 BASIC35.97■■■■□ 3.35
MSH6P52701 HSD11B1L-202ENST00000339423 1660 ntAPPRIS P3 TSL 1 (best) BASIC35.96■■■■□ 3.35
MSH6P52701 AC127502.1-201ENST00000399971 1502 ntBASIC35.96■■■■□ 3.35
MSH6P52701 RSPO4-202ENST00000400634 722 ntTSL 1 (best) BASIC35.95■■■■□ 3.35
MSH6P52701 AL592293.1-201ENST00000502889 1188 ntBASIC35.95■■■■□ 3.35
MSH6P52701 AL157400.5-201ENST00000507624 621 ntBASIC35.95■■■■□ 3.35
MSH6P52701 ERFE-207ENST00000546354 1065 ntAPPRIS P2 TSL 1 (best) BASIC35.95■■■■□ 3.35
MSH6P52701 TOMM40-201ENST00000252487 1707 ntAPPRIS P2 TSL 1 (best) BASIC35.94■■■■□ 3.34
MSH6P52701 TOMM40-202ENST00000405636 1709 ntAPPRIS P2 TSL 1 (best) BASIC35.94■■■■□ 3.34
MSH6P52701 AC126177.7-201ENST00000547904 679 ntBASIC35.94■■■■□ 3.34
MSH6P52701 AC007029.1-201ENST00000604183 313 ntBASIC35.93■■■■□ 3.34
MSH6P52701 ZDHHC3-203ENST00000342790 1336 ntTSL 5 BASIC35.92■■■■□ 3.34
MSH6P52701 MAPK3-203ENST00000395199 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC35.92■■■■□ 3.34
MSH6P52701 AC090241.2-201ENST00000602329 432 ntTSL 4 BASIC35.92■■■■□ 3.34
MSH6P52701 FMR1-219ENST00000621453 1864 ntTSL 1 (best) BASIC35.92■■■■□ 3.34
MSH6P52701 CHST12-204ENST00000618655 2131 ntAPPRIS P1 TSL 1 (best) BASIC35.92■■■■□ 3.34
MSH6P52701 G6PC3-201ENST00000269097 1533 ntAPPRIS P1 TSL 1 (best) BASIC35.92■■■■□ 3.34
MSH6P52701 HSPB6-202ENST00000587965 711 ntTSL 2 BASIC35.91■■■■□ 3.34
MSH6P52701 MIR1-1HG-202ENST00000624914 1220 ntTSL 1 (best) BASIC35.91■■■■□ 3.34
MSH6P52701 PI4KAP1-202ENST00000611748 1906 ntTSL 1 (best) BASIC35.91■■■■□ 3.34
MSH6P52701 LY6H-201ENST00000342752 951 ntAPPRIS ALT2 TSL 1 (best) BASIC35.9■■■■□ 3.34
MSH6P52701 LY6H-202ENST00000414417 1056 ntAPPRIS ALT2 TSL 1 (best) BASIC35.9■■■■□ 3.34
MSH6P52701 LY6H-203ENST00000430474 925 ntAPPRIS P3 TSL 3 BASIC35.9■■■■□ 3.34
MSH6P52701 IGFBP3-202ENST00000381083 1050 ntAPPRIS ALT1 TSL 5 BASIC35.89■■■■□ 3.34
MSH6P52701 AC055876.1-201ENST00000430589 895 ntTSL 2 BASIC35.89■■■■□ 3.34
MSH6P52701 AC009831.1-201ENST00000580420 1582 ntBASIC35.88■■■■□ 3.33
MSH6P52701 NIT1-201ENST00000368007 1749 ntTSL 2 BASIC35.88■■■■□ 3.33
MSH6P52701 MAPK8IP1P1-201ENST00000574657 1439 ntBASIC35.87■■■■□ 3.33
MSH6P52701 PSMG3-202ENST00000288607 1391 ntAPPRIS P1 TSL 1 (best) BASIC35.87■■■■□ 3.33
MSH6P52701 SH3GLB2-201ENST00000372554 1985 ntTSL 1 (best) BASIC35.87■■■■□ 3.33
MSH6P52701 MED25-210ENST00000612854 801 ntTSL 5 BASIC35.87■■■■□ 3.33
MSH6P52701 MED25-213ENST00000620467 1293 ntTSL 1 (best) BASIC35.87■■■■□ 3.33
MSH6P52701 MED25-214ENST00000622402 642 ntTSL 5 BASIC35.87■■■■□ 3.33
MSH6P52701 CRELD2-203ENST00000404488 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC35.87■■■■□ 3.33
MSH6P52701 MLST8-203ENST00000397124 1691 ntAPPRIS P3 TSL 5 BASIC35.85■■■■□ 3.33
MSH6P52701 FLVCR1-AS1-203ENST00000426161 892 ntTSL 1 (best) BASIC35.85■■■■□ 3.33
MSH6P52701 DCDC2C-201ENST00000399143 1476 ntAPPRIS P1 TSL 5 BASIC35.84■■■■□ 3.33
MSH6P52701 RASGRP2-204ENST00000377487 642 ntTSL 2 BASIC35.84■■■■□ 3.33
MSH6P52701 TIE1-210ENST00000538015 1140 ntTSL 1 (best) BASIC35.84■■■■□ 3.33
MSH6P52701 AC064853.2-201ENST00000641246 144 ntAPPRIS P1 BASIC35.84■■■■□ 3.33
MSH6P52701 HSPE1-201ENST00000233893 950 ntAPPRIS P1 TSL 1 (best) BASIC35.83■■■■□ 3.33
MSH6P52701 PEX7-203ENST00000541292 945 ntTSL 5 BASIC35.83■■■■□ 3.33
MSH6P52701 NPC2-207ENST00000555619 1035 ntAPPRIS P2 TSL 1 (best) BASIC35.83■■■■□ 3.33
MSH6P52701 AC133552.2-201ENST00000619106 1032 ntBASIC35.83■■■■□ 3.33
MSH6P52701 UBE2D2-205ENST00000505548 1113 ntTSL 1 (best) BASIC35.82■■■■□ 3.32
MSH6P52701 AC131212.1-201ENST00000613771 668 ntBASIC35.82■■■■□ 3.32
MSH6P52701 PAOX-206ENST00000480071 1324 ntTSL 1 (best) BASIC35.82■■■■□ 3.32
MSH6P52701 TAZ-201ENST00000369776 1596 ntTSL 1 (best) BASIC35.81■■■■□ 3.32
MSH6P52701 C7orf50-202ENST00000397098 2131 ntAPPRIS P2 TSL 1 (best) BASIC35.81■■■■□ 3.32
MSH6P52701 C16orf52-207ENST00000569656 1257 ntTSL 5 BASIC35.81■■■■□ 3.32
MSH6P52701 PNMT-201ENST00000269582 1253 ntAPPRIS P1 TSL 1 (best) BASIC35.8■■■■□ 3.32
MSH6P52701 WDR86-204ENST00000477459 1428 ntTSL 2 BASIC35.8■■■■□ 3.32
MSH6P52701 FAM78B-201ENST00000338353 1597 ntAPPRIS P1 TSL 1 (best) BASIC35.8■■■■□ 3.32
MSH6P52701 VIPR2-204ENST00000421760 717 ntTSL 3 BASIC35.79■■■■□ 3.32
MSH6P52701 C9orf147-202ENST00000457681 561 ntTSL 2 BASIC35.79■■■■□ 3.32
MSH6P52701 REST-210ENST00000638187 1334 ntTSL 5 BASIC35.79■■■■□ 3.32
MSH6P52701 GRK6-206ENST00000507633 1660 ntTSL 5 BASIC35.79■■■■□ 3.32
MSH6P52701 FAM120C-203ENST00000477084 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC35.78■■■■□ 3.32
MSH6P52701 AC009299.2-201ENST00000482477 511 ntBASIC35.78■■■■□ 3.32
MSH6P52701 TMEM238-201ENST00000444469 1000 ntAPPRIS P1 TSL 1 (best) BASIC35.77■■■■□ 3.32
MSH6P52701 PTRH1-208ENST00000543175 814 ntAPPRIS P1 TSL 1 (best) BASIC35.77■■■■□ 3.32
MSH6P52701 SPATA33-209ENST00000579310 1490 ntAPPRIS ALT2 TSL 2 BASIC35.77■■■■□ 3.32
MSH6P52701 C14orf80-203ENST00000354560 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC35.77■■■■□ 3.32
MSH6P52701 AC093390.2-201ENST00000638628 1007 ntTSL 5 BASIC35.76■■■■□ 3.32
MSH6P52701 ZNF470-206ENST00000601902 1640 ntTSL 1 (best) BASIC35.76■■■■□ 3.32
MSH6P52701 LTC4S-205ENST00000486713 496 ntTSL 2 BASIC35.76■■■■□ 3.31
MSH6P52701 MSRB2-201ENST00000376510 1803 ntAPPRIS P1 TSL 1 (best) BASIC35.75■■■■□ 3.31
MSH6P52701 TMEM151B-201ENST00000438774 1140 ntAPPRIS ALT2 TSL 3 BASIC35.75■■■■□ 3.31
MSH6P52701 WBP1-201ENST00000233615 1294 ntAPPRIS P2 TSL 1 (best) BASIC35.74■■■■□ 3.31
MSH6P52701 PTPA-210ENST00000414510 1153 ntTSL 1 (best) BASIC35.73■■■■□ 3.31
Retrieved 100 of 98,524 protein–RNA pairs in 112.8 ms