Protein–RNA interactions for Protein: P40938

RFC3, Replication factor C subunit 3, humanhuman

Predictions only

Length 356 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC3P40938 ATF4-201ENST00000337304 2019 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
RFC3P40938 HOMER3-202ENST00000392351 1557 ntAPPRIS P3 TSL 1 (best) BASIC23.23■■□□□ 1.31
RFC3P40938 HOXB3-212ENST00000498678 2196 ntAPPRIS P1 TSL 2 BASIC23.23■■□□□ 1.31
RFC3P40938 SP8-201ENST00000361443 1714 ntAPPRIS P3 TSL 1 (best) BASIC23.23■■□□□ 1.31
RFC3P40938 HSD17B12-202ENST00000395700 994 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
RFC3P40938 CEP120-209ENST00000515110 606 ntTSL 3 BASIC23.23■■□□□ 1.31
RFC3P40938 LINC01896-206ENST00000575722 1256 ntTSL 2 BASIC23.23■■□□□ 1.31
RFC3P40938 CCDC88C-205ENST00000553403 1651 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
RFC3P40938 NRXN1-228ENST00000628364 2444 ntTSL 5 BASIC23.22■■□□□ 1.31
RFC3P40938 ITPKA-201ENST00000260386 1824 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
RFC3P40938 RPUSD1-208ENST00000567114 1835 ntTSL 2 BASIC23.22■■□□□ 1.31
RFC3P40938 U2AF1-203ENST00000398137 1019 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
RFC3P40938 GPX1-201ENST00000419349 1106 ntBASIC23.22■■□□□ 1.31
RFC3P40938 AC008813.1-201ENST00000536597 885 ntBASIC23.22■■□□□ 1.31
RFC3P40938 UBALD1-203ENST00000587649 707 ntTSL 3 BASIC23.22■■□□□ 1.31
RFC3P40938 U2AF1L5-212ENST00000639996 1019 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
RFC3P40938 CIB2-201ENST00000258930 1598 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
RFC3P40938 TNFRSF25-204ENST00000356876 1625 ntAPPRIS ALT2 TSL 1 (best) BASIC23.22■■□□□ 1.31
RFC3P40938 SIRT3-201ENST00000382743 2543 ntAPPRIS P2 TSL 1 (best) BASIC23.21■■□□□ 1.31
RFC3P40938 PDF-201ENST00000288022 1158 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
RFC3P40938 COPZ2-210ENST00000621465 895 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
RFC3P40938 DCDC2C-201ENST00000399143 1476 ntAPPRIS P1 TSL 5 BASIC23.21■■□□□ 1.31
RFC3P40938 MEST-211ENST00000437945 1455 ntTSL 5 BASIC23.21■■□□□ 1.31
RFC3P40938 AMN-201ENST00000299155 1907 ntAPPRIS P2 TSL 1 (best) BASIC23.21■■□□□ 1.31
RFC3P40938 AC027237.3-202ENST00000558617 1778 ntTSL 2 BASIC23.2■■□□□ 1.3
RFC3P40938 RDX-210ENST00000530301 1549 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
RFC3P40938 LINC01918-201ENST00000436841 797 ntTSL 2 BASIC23.2■■□□□ 1.3
RFC3P40938 C16orf74-204ENST00000602719 1002 ntAPPRIS ALT2 TSL 3 BASIC23.2■■□□□ 1.3
RFC3P40938 FGF18-201ENST00000274625 1986 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
RFC3P40938 C9orf50-201ENST00000372478 1620 ntAPPRIS P2 TSL 2 BASIC23.19■■□□□ 1.3
RFC3P40938 BLOC1S3-202ENST00000587722 732 ntAPPRIS P1 BASIC23.18■■□□□ 1.3
RFC3P40938 RPARP-AS1-205ENST00000596045 431 ntTSL 3 BASIC23.18■■□□□ 1.3
RFC3P40938 LDLRAD4-218ENST00000592991 1640 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
RFC3P40938 LACTBL1-202ENST00000618559 1500 ntAPPRIS ALT2 TSL 5 BASIC23.18■■□□□ 1.3
RFC3P40938 AC100797.4-201ENST00000631653 1827 ntBASIC23.17■■□□□ 1.3
RFC3P40938 ZFAND2B-208ENST00000409594 2021 ntTSL 2 BASIC23.17■■□□□ 1.3
RFC3P40938 CHST11-203ENST00000547956 936 ntTSL 2 BASIC23.17■■□□□ 1.3
RFC3P40938 IGFBP2-201ENST00000233809 1439 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
RFC3P40938 KIF13A-207ENST00000502704 1330 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
RFC3P40938 SSBP3-202ENST00000357475 1533 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
RFC3P40938 FOXE3-201ENST00000335071 1981 ntAPPRIS P1 BASIC23.16■■□□□ 1.3
RFC3P40938 TMEM150A-202ENST00000334462 1518 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
RFC3P40938 BAX-202ENST00000345358 793 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
RFC3P40938 AC068134.2-201ENST00000437095 576 ntTSL 3 BASIC23.15■■□□□ 1.3
RFC3P40938 FEZ1-201ENST00000278919 1748 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
RFC3P40938 GLTP-201ENST00000318348 2356 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.3
RFC3P40938 TAF10-201ENST00000299424 1215 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
RFC3P40938 PEX7-203ENST00000541292 945 ntTSL 5 BASIC23.14■■□□□ 1.29
RFC3P40938 TXNL4A-208ENST00000588162 752 ntTSL 2 BASIC23.14■■□□□ 1.29
RFC3P40938 AC022413.1-201ENST00000624602 984 ntBASIC23.14■■□□□ 1.29
RFC3P40938 ATOH7-201ENST00000373673 1480 ntAPPRIS P1 BASIC23.13■■□□□ 1.29
RFC3P40938 PHF20L1-207ENST00000395379 1998 ntTSL 5 BASIC23.13■■□□□ 1.29
RFC3P40938 AGO3-204ENST00000397828 1035 ntTSL 2 BASIC23.13■■□□□ 1.29
RFC3P40938 RCC1L-202ENST00000614461 2419 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
RFC3P40938 TAZ-201ENST00000369776 1596 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
RFC3P40938 AC078883.1-202ENST00000450443 1397 ntTSL 3 BASIC23.13■■□□□ 1.29
RFC3P40938 DCBLD1-201ENST00000296955 1979 ntAPPRIS P2 TSL 1 (best) BASIC23.12■■□□□ 1.29
RFC3P40938 RARRES2P2-201ENST00000394842 485 ntBASIC23.12■■□□□ 1.29
RFC3P40938 MDFIC-203ENST00000423503 474 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
RFC3P40938 FOXQ1-201ENST00000296839 2309 ntAPPRIS P1 BASIC23.11■■□□□ 1.29
RFC3P40938 AL139393.2-201ENST00000608721 2025 ntBASIC23.11■■□□□ 1.29
RFC3P40938 MAP3K8-203ENST00000375322 932 ntTSL 2 BASIC23.11■■□□□ 1.29
RFC3P40938 RBPMS-209ENST00000520161 842 ntTSL 2 BASIC23.11■■□□□ 1.29
RFC3P40938 CGREF1-203ENST00000402394 1906 ntAPPRIS P2 TSL 2 BASIC23.1■■□□□ 1.29
RFC3P40938 PI4KAP2-202ENST00000450651 2294 ntTSL 5 BASIC23.1■■□□□ 1.29
RFC3P40938 G6PC3-201ENST00000269097 1533 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
RFC3P40938 LSM7-201ENST00000252622 529 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
RFC3P40938 AC007383.2-202ENST00000435627 482 ntTSL 2 BASIC23.1■■□□□ 1.29
RFC3P40938 RPS2-210ENST00000530225 765 ntTSL 2 BASIC23.1■■□□□ 1.29
RFC3P40938 C14orf80-203ENST00000354560 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC23.1■■□□□ 1.29
RFC3P40938 MIR219A2-201ENST00000608502 1504 ntBASIC23.09■■□□□ 1.29
RFC3P40938 LZTS2-201ENST00000370220 5741 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
RFC3P40938 C1orf122-201ENST00000373042 973 ntAPPRIS P3 TSL 1 (best) BASIC23.09■■□□□ 1.29
RFC3P40938 BCL3-201ENST00000164227 2038 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
RFC3P40938 AP004833.2-201ENST00000532228 1454 ntBASIC23.09■■□□□ 1.29
RFC3P40938 EMC10-202ENST00000376918 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC23.08■■□□□ 1.29
RFC3P40938 RPRML-201ENST00000322329 1093 ntAPPRIS P1 BASIC23.08■■□□□ 1.29
RFC3P40938 TMEM114-202ENST00000568335 899 ntTSL 3 BASIC23.08■■□□□ 1.29
RFC3P40938 CDC34-201ENST00000215574 1471 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
RFC3P40938 AGAP3-216ENST00000479901 1881 ntTSL 5 BASIC23.08■■□□□ 1.29
RFC3P40938 FKBP1A-205ENST00000439640 1583 ntTSL 3 BASIC23.07■■□□□ 1.28
RFC3P40938 AC148477.6-201ENST00000623746 465 ntBASIC23.07■■□□□ 1.28
RFC3P40938 SNX15-202ENST00000377244 1939 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
RFC3P40938 ANKS1B-203ENST00000341752 2115 ntTSL 2 BASIC23.06■■□□□ 1.28
RFC3P40938 CUL4A-202ENST00000375440 2364 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
RFC3P40938 ABCB10P3-201ENST00000561950 2166 ntBASIC23.06■■□□□ 1.28
RFC3P40938 EPB41L4A-AS2-201ENST00000623705 1396 ntBASIC23.06■■□□□ 1.28
RFC3P40938 HOXD-AS2-201ENST00000426965 927 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
RFC3P40938 PGM5P2-201ENST00000613141 1980 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
RFC3P40938 RNF126P1-201ENST00000567452 1320 ntBASIC23.06■■□□□ 1.28
RFC3P40938 MPP6-203ENST00000409761 1703 ntTSL 5 BASIC23.05■■□□□ 1.28
RFC3P40938 KLHL21-203ENST00000463043 667 ntTSL 5 BASIC23.05■■□□□ 1.28
RFC3P40938 PLEKHF2-202ENST00000519516 1144 ntAPPRIS P1 TSL 3 BASIC23.05■■□□□ 1.28
RFC3P40938 MXI1-201ENST00000239007 2424 ntAPPRIS ALT1 TSL 1 (best) BASIC23.04■■□□□ 1.28
RFC3P40938 PURG-201ENST00000339382 2693 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
RFC3P40938 TSR3-201ENST00000007390 1243 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
RFC3P40938 FGFRL1-205ENST00000510644 2304 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
RFC3P40938 SPATA33-209ENST00000579310 1490 ntAPPRIS ALT2 TSL 2 BASIC23.04■■□□□ 1.28
RFC3P40938 ST6GALNAC6-203ENST00000373142 2448 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
RFC3P40938 F8A3-201ENST00000622749 1759 ntAPPRIS P1 BASIC23.01■■□□□ 1.27
Retrieved 100 of 98,524 protein–RNA pairs in 99.6 ms