Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 GAL3ST3-203ENST00000527878 1599 ntAPPRIS P1 TSL 1 (best) BASIC31.96■■■□□ 2.71
BRCA1P38398 AC129492.7-201ENST00000622992 756 ntBASIC31.95■■■□□ 2.71
BRCA1P38398 TPRA1-201ENST00000296210 1725 ntTSL 1 (best) BASIC31.95■■■□□ 2.71
BRCA1P38398 C19orf12-207ENST00000592153 1504 ntTSL 1 (best) BASIC31.95■■■□□ 2.7
BRCA1P38398 HSD11B1L-202ENST00000339423 1660 ntAPPRIS P3 TSL 1 (best) BASIC31.94■■■□□ 2.7
BRCA1P38398 TUBB6-201ENST00000317702 2064 ntAPPRIS P1 TSL 1 (best) BASIC31.93■■■□□ 2.7
BRCA1P38398 OPRD1-202ENST00000621425 1217 ntTSL 1 (best) BASIC31.93■■■□□ 2.7
BRCA1P38398 MARCKSL1-201ENST00000329421 1699 ntAPPRIS P1 TSL 1 (best) BASIC31.93■■■□□ 2.7
BRCA1P38398 PROSER2-202ENST00000379200 1232 ntAPPRIS ALT2 BASIC31.93■■■□□ 2.7
BRCA1P38398 KRTAP5-5-201ENST00000399676 933 ntAPPRIS P1 BASIC31.92■■■□□ 2.7
BRCA1P38398 EPB41L4A-AS2-201ENST00000623705 1396 ntBASIC31.91■■■□□ 2.7
BRCA1P38398 AC090241.2-201ENST00000602329 432 ntTSL 4 BASIC31.91■■■□□ 2.7
BRCA1P38398 CMPK2-203ENST00000458098 1224 ntTSL 1 (best) BASIC31.9■■■□□ 2.7
BRCA1P38398 GPR137-202ENST00000377702 1478 ntTSL 1 (best) BASIC31.89■■■□□ 2.7
BRCA1P38398 ECEL1P2-201ENST00000461596 1295 ntBASIC31.89■■■□□ 2.7
BRCA1P38398 MAPK8IP1P1-201ENST00000574657 1439 ntBASIC31.89■■■□□ 2.7
BRCA1P38398 ANAPC13-201ENST00000354910 1209 ntAPPRIS P1 TSL 1 (best) BASIC31.89■■■□□ 2.69
BRCA1P38398 TAZ-201ENST00000369776 1596 ntTSL 1 (best) BASIC31.88■■■□□ 2.69
BRCA1P38398 AC110285.7-201ENST00000624417 1536 ntBASIC31.88■■■□□ 2.69
BRCA1P38398 MIF-201ENST00000215754 939 ntAPPRIS P1 TSL 1 (best) BASIC31.87■■■□□ 2.69
BRCA1P38398 RAB32-201ENST00000367495 1217 ntAPPRIS P1 TSL 1 (best) BASIC31.87■■■□□ 2.69
BRCA1P38398 RSPO4-202ENST00000400634 722 ntTSL 1 (best) BASIC31.87■■■□□ 2.69
BRCA1P38398 ATXN3-252ENST00000620536 1044 ntTSL 5 BASIC31.87■■■□□ 2.69
BRCA1P38398 ATXN3-253ENST00000621269 936 ntTSL 5 BASIC31.87■■■□□ 2.69
BRCA1P38398 ZNF688-203ENST00000563276 1492 ntTSL 2 BASIC31.87■■■□□ 2.69
BRCA1P38398 MSX1-201ENST00000382723 1939 ntAPPRIS P1 TSL 1 (best) BASIC31.87■■■□□ 2.69
BRCA1P38398 IZUMO4-202ENST00000395301 1021 ntAPPRIS ALT2 TSL 1 (best) BASIC31.86■■■□□ 2.69
BRCA1P38398 AL592293.1-201ENST00000502889 1188 ntBASIC31.86■■■□□ 2.69
BRCA1P38398 ERFE-207ENST00000546354 1065 ntAPPRIS P2 TSL 1 (best) BASIC31.86■■■□□ 2.69
BRCA1P38398 GRK6-206ENST00000507633 1660 ntTSL 5 BASIC31.86■■■□□ 2.69
BRCA1P38398 SPATA33-209ENST00000579310 1490 ntAPPRIS ALT2 TSL 2 BASIC31.86■■■□□ 2.69
BRCA1P38398 SAMD1-202ENST00000533683 2164 ntAPPRIS P5 TSL 1 (best) BASIC31.86■■■□□ 2.69
BRCA1P38398 HSPB6-202ENST00000587965 711 ntTSL 2 BASIC31.85■■■□□ 2.69
BRCA1P38398 MED25-210ENST00000612854 801 ntTSL 5 BASIC31.85■■■□□ 2.69
BRCA1P38398 MED25-213ENST00000620467 1293 ntTSL 1 (best) BASIC31.85■■■□□ 2.69
BRCA1P38398 MED25-214ENST00000622402 642 ntTSL 5 BASIC31.85■■■□□ 2.69
BRCA1P38398 DCDC2C-201ENST00000399143 1476 ntAPPRIS P1 TSL 5 BASIC31.85■■■□□ 2.69
BRCA1P38398 C16orf59-202ENST00000483320 1709 ntAPPRIS ALT2 TSL 2 BASIC31.85■■■□□ 2.69
BRCA1P38398 CAPNS1-204ENST00000587718 1558 ntAPPRIS ALT2 TSL 1 (best) BASIC31.85■■■□□ 2.69
BRCA1P38398 KCTD15-206ENST00000588881 1211 ntAPPRIS P1 TSL 2 BASIC31.84■■■□□ 2.69
BRCA1P38398 MAPK3-203ENST00000395199 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC31.84■■■□□ 2.69
BRCA1P38398 OXLD1-201ENST00000374741 620 ntAPPRIS P1 TSL 1 (best) BASIC31.83■■■□□ 2.69
BRCA1P38398 AC011448.1-201ENST00000555938 1100 ntAPPRIS P1 TSL 2 BASIC31.82■■■□□ 2.69
BRCA1P38398 AC007029.1-201ENST00000604183 313 ntBASIC31.82■■■□□ 2.69
BRCA1P38398 OVOL2-201ENST00000278780 1555 ntAPPRIS P1 TSL 1 (best) BASIC31.82■■■□□ 2.68
BRCA1P38398 C17orf49-201ENST00000439424 850 ntAPPRIS P3 TSL 1 (best) BASIC31.82■■■□□ 2.68
BRCA1P38398 MLST8-203ENST00000397124 1691 ntAPPRIS P3 TSL 5 BASIC31.81■■■□□ 2.68
BRCA1P38398 MTURN-203ENST00000409688 843 ntTSL 2 BASIC31.81■■■□□ 2.68
BRCA1P38398 AC127502.1-201ENST00000399971 1502 ntBASIC31.8■■■□□ 2.68
BRCA1P38398 IGFBP3-202ENST00000381083 1050 ntAPPRIS ALT1 TSL 5 BASIC31.8■■■□□ 2.68
BRCA1P38398 PTRH1-208ENST00000543175 814 ntAPPRIS P1 TSL 1 (best) BASIC31.8■■■□□ 2.68
BRCA1P38398 WBP1-201ENST00000233615 1294 ntAPPRIS P2 TSL 1 (best) BASIC31.79■■■□□ 2.68
BRCA1P38398 ADAMTS13-203ENST00000371910 1074 ntTSL 1 (best) BASIC31.78■■■□□ 2.68
BRCA1P38398 TBX2-AS1-203ENST00000590421 861 ntTSL 2 BASIC31.78■■■□□ 2.68
BRCA1P38398 MIR1-1HG-202ENST00000624914 1220 ntTSL 1 (best) BASIC31.78■■■□□ 2.68
BRCA1P38398 CARS2-201ENST00000257347 1879 ntAPPRIS P1 TSL 1 (best) BASIC31.78■■■□□ 2.68
BRCA1P38398 C9orf147-202ENST00000457681 561 ntTSL 2 BASIC31.78■■■□□ 2.68
BRCA1P38398 C1QTNF8-201ENST00000328449 1627 ntAPPRIS P1 TSL 5 BASIC31.77■■■□□ 2.68
BRCA1P38398 STK25-202ENST00000401869 2251 ntAPPRIS P1 TSL 1 (best) BASIC31.77■■■□□ 2.68
BRCA1P38398 FAM120C-203ENST00000477084 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC31.76■■■□□ 2.68
BRCA1P38398 FAHD1-204ENST00000615972 757 ntTSL 5 BASIC31.76■■■□□ 2.68
BRCA1P38398 NKX2-1-204ENST00000522719 1417 ntAPPRIS P1 TSL 1 (best) BASIC31.76■■■□□ 2.67
BRCA1P38398 EIF5A-211ENST00000576930 1439 ntAPPRIS P1 TSL 5 BASIC31.76■■■□□ 2.67
BRCA1P38398 AC009299.2-201ENST00000482477 511 ntBASIC31.76■■■□□ 2.67
BRCA1P38398 NIT1-201ENST00000368007 1749 ntTSL 2 BASIC31.75■■■□□ 2.67
BRCA1P38398 PTPA-210ENST00000414510 1153 ntTSL 1 (best) BASIC31.75■■■□□ 2.67
BRCA1P38398 FAM222B-205ENST00000577682 549 ntTSL 4 BASIC31.75■■■□□ 2.67
BRCA1P38398 AC009831.1-201ENST00000580420 1582 ntBASIC31.75■■■□□ 2.67
BRCA1P38398 TRIOBP-205ENST00000407319 2125 ntAPPRIS P3 TSL 1 (best) BASIC31.74■■■□□ 2.67
BRCA1P38398 PSMG3-202ENST00000288607 1391 ntAPPRIS P1 TSL 1 (best) BASIC31.73■■■□□ 2.67
BRCA1P38398 RASGRP2-204ENST00000377487 642 ntTSL 2 BASIC31.73■■■□□ 2.67
BRCA1P38398 FLVCR1-AS1-203ENST00000426161 892 ntTSL 1 (best) BASIC31.73■■■□□ 2.67
BRCA1P38398 C14orf80-203ENST00000354560 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC31.72■■■□□ 2.67
BRCA1P38398 PAOX-206ENST00000480071 1324 ntTSL 1 (best) BASIC31.72■■■□□ 2.67
BRCA1P38398 FAM78B-201ENST00000338353 1597 ntAPPRIS P1 TSL 1 (best) BASIC31.72■■■□□ 2.67
BRCA1P38398 ZDHHC3-203ENST00000342790 1336 ntTSL 5 BASIC31.72■■■□□ 2.67
BRCA1P38398 MSRB2-201ENST00000376510 1803 ntAPPRIS P1 TSL 1 (best) BASIC31.72■■■□□ 2.67
BRCA1P38398 S100A6-201ENST00000368719 665 ntAPPRIS P1 TSL 1 (best) BASIC31.71■■■□□ 2.67
BRCA1P38398 TIE1-210ENST00000538015 1140 ntTSL 1 (best) BASIC31.71■■■□□ 2.67
BRCA1P38398 CRELD2-203ENST00000404488 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC31.71■■■□□ 2.67
BRCA1P38398 BCL7B-201ENST00000223368 1975 ntAPPRIS P1 TSL 1 (best) BASIC31.7■■■□□ 2.67
BRCA1P38398 CLEC11A-201ENST00000250340 1419 ntAPPRIS P1 TSL 1 (best) BASIC31.7■■■□□ 2.66
BRCA1P38398 NKIRAS2-208ENST00000462043 585 ntTSL 4 BASIC31.69■■■□□ 2.66
BRCA1P38398 ABHD17B-202ENST00000377041 1312 ntAPPRIS P4 TSL 1 (best) BASIC31.69■■■□□ 2.66
BRCA1P38398 LY6H-201ENST00000342752 951 ntAPPRIS ALT2 TSL 1 (best) BASIC31.69■■■□□ 2.66
BRCA1P38398 LY6H-202ENST00000414417 1056 ntAPPRIS ALT2 TSL 1 (best) BASIC31.69■■■□□ 2.66
BRCA1P38398 LY6H-203ENST00000430474 925 ntAPPRIS P3 TSL 3 BASIC31.69■■■□□ 2.66
BRCA1P38398 C7orf50-202ENST00000397098 2131 ntAPPRIS P2 TSL 1 (best) BASIC31.68■■■□□ 2.66
BRCA1P38398 VIPR2-204ENST00000421760 717 ntTSL 3 BASIC31.68■■■□□ 2.66
BRCA1P38398 ARL6IP4-208ENST00000439686 796 ntAPPRIS ALT2 TSL 3 BASIC31.68■■■□□ 2.66
BRCA1P38398 AC093390.2-201ENST00000638628 1007 ntTSL 5 BASIC31.68■■■□□ 2.66
BRCA1P38398 ZNF470-206ENST00000601902 1640 ntTSL 1 (best) BASIC31.68■■■□□ 2.66
BRCA1P38398 CHST12-204ENST00000618655 2131 ntAPPRIS P1 TSL 1 (best) BASIC31.67■■■□□ 2.66
BRCA1P38398 SH3GLB2-201ENST00000372554 1985 ntTSL 1 (best) BASIC31.66■■■□□ 2.66
BRCA1P38398 HOXB3-210ENST00000489475 1845 ntTSL 2 BASIC31.66■■■□□ 2.66
BRCA1P38398 GATA6-202ENST00000581694 2057 ntAPPRIS P1 TSL 1 (best) BASIC31.65■■■□□ 2.66
BRCA1P38398 YIF1A-201ENST00000359461 943 ntTSL 2 BASIC31.65■■■□□ 2.66
BRCA1P38398 YIF1A-203ENST00000376901 1124 ntAPPRIS P1 TSL 1 (best) BASIC31.65■■■□□ 2.66
BRCA1P38398 UBE2D2-205ENST00000505548 1113 ntTSL 1 (best) BASIC31.65■■■□□ 2.66
BRCA1P38398 AC133552.2-201ENST00000619106 1032 ntBASIC31.65■■■□□ 2.66
Retrieved 100 of 98,524 protein–RNA pairs in 16.6 ms