Protein–RNA interactions for Protein: P00558

PGK1, Phosphoglycerate kinase 1, humanhuman

Predictions only

Length 417 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PGK1P00558 GFER-205ENST00000569451 517 ntTSL 5 BASIC28.72■■■□□ 2.19
PGK1P00558 AC092296.2-201ENST00000589470 999 ntBASIC28.72■■■□□ 2.19
PGK1P00558 OVOL2-201ENST00000278780 1555 ntAPPRIS P1 TSL 1 (best) BASIC28.71■■■□□ 2.19
PGK1P00558 GAL3ST3-203ENST00000527878 1599 ntAPPRIS P1 TSL 1 (best) BASIC28.71■■■□□ 2.19
PGK1P00558 NKX2-1-204ENST00000522719 1417 ntAPPRIS P1 TSL 1 (best) BASIC28.71■■■□□ 2.19
PGK1P00558 MORF4L1-203ENST00000426013 1880 ntAPPRIS P1 TSL 1 (best) BASIC28.7■■■□□ 2.19
PGK1P00558 ENDOG-201ENST00000372642 1172 ntAPPRIS P1 TSL 1 (best) BASIC28.7■■■□□ 2.18
PGK1P00558 PEX7-203ENST00000541292 945 ntTSL 5 BASIC28.7■■■□□ 2.18
PGK1P00558 CAPNS1-216ENST00000628306 1389 ntTSL 5 BASIC28.7■■■□□ 2.18
PGK1P00558 GPR137-202ENST00000377702 1478 ntTSL 1 (best) BASIC28.7■■■□□ 2.18
PGK1P00558 AC004987.1-201ENST00000428627 508 ntBASIC28.69■■■□□ 2.18
PGK1P00558 IFNGR2-201ENST00000290219 2221 ntAPPRIS P3 TSL 1 (best) BASIC28.69■■■□□ 2.18
PGK1P00558 ZMYND19-201ENST00000298585 1375 ntAPPRIS P1 TSL 1 (best) BASIC28.68■■■□□ 2.18
PGK1P00558 TSPY13P-201ENST00000338964 914 ntBASIC28.68■■■□□ 2.18
PGK1P00558 LINC01770-201ENST00000417917 634 ntTSL 2 BASIC28.68■■■□□ 2.18
PGK1P00558 FOXO6-202ENST00000641094 1476 ntAPPRIS P1 BASIC28.67■■■□□ 2.18
PGK1P00558 COL13A1-212ENST00000520133 1833 ntTSL 5 BASIC28.67■■■□□ 2.18
PGK1P00558 MCCD1-201ENST00000376191 955 ntAPPRIS P1 TSL 1 (best) BASIC28.67■■■□□ 2.18
PGK1P00558 CCDC37-AS1-202ENST00000506660 986 ntTSL 1 (best) BASIC28.67■■■□□ 2.18
PGK1P00558 G6PC3-201ENST00000269097 1533 ntAPPRIS P1 TSL 1 (best) BASIC28.67■■■□□ 2.18
PGK1P00558 RASL10A-202ENST00000401450 1720 ntTSL 2 BASIC28.66■■■□□ 2.18
PGK1P00558 TXNL4A-208ENST00000588162 752 ntTSL 2 BASIC28.66■■■□□ 2.18
PGK1P00558 TAZ-201ENST00000369776 1596 ntTSL 1 (best) BASIC28.66■■■□□ 2.18
PGK1P00558 CRELD2-203ENST00000404488 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC28.66■■■□□ 2.18
PGK1P00558 PRRX2-201ENST00000372469 1311 ntAPPRIS P1 TSL 1 (best) BASIC28.66■■■□□ 2.18
PGK1P00558 ATP5G2P3-201ENST00000429083 425 ntBASIC28.65■■■□□ 2.18
PGK1P00558 CMPK2-203ENST00000458098 1224 ntTSL 1 (best) BASIC28.65■■■□□ 2.18
PGK1P00558 GNG10-201ENST00000374293 1491 ntAPPRIS P1 TSL 1 (best) BASIC28.65■■■□□ 2.18
PGK1P00558 MKNK2-202ENST00000309340 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC28.64■■■□□ 2.18
PGK1P00558 MZT2B-201ENST00000281871 933 ntAPPRIS P3 TSL 1 (best) BASIC28.64■■■□□ 2.18
PGK1P00558 MZT2A-201ENST00000309451 624 ntAPPRIS P1 TSL 1 (best) BASIC28.64■■■□□ 2.18
PGK1P00558 IZUMO4-202ENST00000395301 1021 ntAPPRIS ALT2 TSL 1 (best) BASIC28.64■■■□□ 2.18
PGK1P00558 SAP25-204ENST00000622764 1031 ntAPPRIS ALT2 TSL 5 BASIC28.64■■■□□ 2.18
PGK1P00558 MKRN1-202ENST00000443720 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC28.64■■■□□ 2.18
PGK1P00558 MAP4K3-211ENST00000484274 407 ntTSL 2 BASIC28.63■■■□□ 2.17
PGK1P00558 SOD3-201ENST00000382120 1526 ntAPPRIS P1 TSL 1 (best) BASIC28.63■■■□□ 2.17
PGK1P00558 SLC9A3-AS1-207ENST00000607286 1357 ntTSL 5 BASIC28.62■■■□□ 2.17
PGK1P00558 C14orf80-203ENST00000354560 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC28.62■■■□□ 2.17
PGK1P00558 ECEL1P2-201ENST00000461596 1295 ntBASIC28.62■■■□□ 2.17
PGK1P00558 RAB4B-203ENST00000594800 1173 ntAPPRIS P1 TSL 5 BASIC28.62■■■□□ 2.17
PGK1P00558 FADS3-201ENST00000278829 1779 ntAPPRIS P1 TSL 1 (best) BASIC28.62■■■□□ 2.17
PGK1P00558 SLC16A11-201ENST00000308009 1803 ntAPPRIS P2 TSL 1 (best) BASIC28.62■■■□□ 2.17
PGK1P00558 KLHL35-204ENST00000539798 1936 ntAPPRIS P1 TSL 1 (best) BASIC28.61■■■□□ 2.17
PGK1P00558 SPATA33-209ENST00000579310 1490 ntAPPRIS ALT2 TSL 2 BASIC28.6■■■□□ 2.17
PGK1P00558 GUK1-208ENST00000366728 842 ntTSL 2 BASIC28.6■■■□□ 2.17
PGK1P00558 OPRD1-202ENST00000621425 1217 ntTSL 1 (best) BASIC28.6■■■□□ 2.17
PGK1P00558 SLC35D2-201ENST00000253270 1613 ntAPPRIS P1 TSL 1 (best) BASIC28.6■■■□□ 2.17
PGK1P00558 RUNX2-205ENST00000465038 1770 ntAPPRIS P4 TSL 5 BASIC28.6■■■□□ 2.17
PGK1P00558 FCGRT-217ENST00000599988 660 ntTSL 5 BASIC28.59■■■□□ 2.17
PGK1P00558 MED25-210ENST00000612854 801 ntTSL 5 BASIC28.59■■■□□ 2.17
PGK1P00558 MED25-213ENST00000620467 1293 ntTSL 1 (best) BASIC28.59■■■□□ 2.17
PGK1P00558 MED25-214ENST00000622402 642 ntTSL 5 BASIC28.59■■■□□ 2.17
PGK1P00558 C1orf232-201ENST00000634842 643 ntAPPRIS P5 TSL 5 BASIC28.59■■■□□ 2.17
PGK1P00558 INPP4A-203ENST00000409463 1565 ntTSL 1 (best) BASIC28.58■■■□□ 2.17
PGK1P00558 MAFA-201ENST00000333480 2347 ntAPPRIS P1 BASIC28.58■■■□□ 2.17
PGK1P00558 DSG2-202ENST00000585206 1081 ntTSL 2 BASIC28.57■■■□□ 2.16
PGK1P00558 MEST-211ENST00000437945 1455 ntTSL 5 BASIC28.57■■■□□ 2.16
PGK1P00558 SLC16A8-201ENST00000320521 1878 ntAPPRIS P1 TSL 1 (best) BASIC28.57■■■□□ 2.16
PGK1P00558 SSBP3-202ENST00000357475 1533 ntTSL 1 (best) BASIC28.56■■■□□ 2.16
PGK1P00558 ARL6IP4-208ENST00000439686 796 ntAPPRIS ALT2 TSL 3 BASIC28.56■■■□□ 2.16
PGK1P00558 PSMG4-207ENST00000451246 824 ntTSL 3 BASIC28.56■■■□□ 2.16
PGK1P00558 RARRES2P1-201ENST00000474487 481 ntBASIC28.56■■■□□ 2.16
PGK1P00558 MAZ-205ENST00000562337 1574 ntTSL 3 BASIC28.56■■■□□ 2.16
PGK1P00558 C19orf12-207ENST00000592153 1504 ntTSL 1 (best) BASIC28.56■■■□□ 2.16
PGK1P00558 EID2-201ENST00000390658 1629 ntAPPRIS P1 BASIC28.55■■■□□ 2.16
PGK1P00558 PPP1R14A-201ENST00000301242 777 ntAPPRIS P1 TSL 1 (best) BASIC28.55■■■□□ 2.16
PGK1P00558 MOB2-207ENST00000614710 705 ntTSL 5 BASIC28.55■■■□□ 2.16
PGK1P00558 GNAS-AS1_1.1-201ENST00000621898 103 ntBASIC28.55■■■□□ 2.16
PGK1P00558 EFNA1-202ENST00000368407 1926 ntAPPRIS P1 TSL 1 (best) BASIC28.55■■■□□ 2.16
PGK1P00558 RASSF8-202ENST00000381352 2320 ntTSL 1 (best) BASIC28.54■■■□□ 2.16
PGK1P00558 WDR86-204ENST00000477459 1428 ntTSL 2 BASIC28.54■■■□□ 2.16
PGK1P00558 AC092647.5-201ENST00000426595 1732 ntAPPRIS P1 TSL 5 BASIC28.54■■■□□ 2.16
PGK1P00558 ATPAF1-202ENST00000371937 1827 ntAPPRIS P1 TSL 1 (best) BASIC28.53■■■□□ 2.16
PGK1P00558 C20orf24-201ENST00000342422 896 ntTSL 2 BASIC28.53■■■□□ 2.16
PGK1P00558 C20orf24-202ENST00000344795 1114 ntAPPRIS P1 TSL 1 (best) BASIC28.53■■■□□ 2.16
PGK1P00558 HOMER3-207ENST00000594794 903 ntTSL 5 BASIC28.53■■■□□ 2.16
PGK1P00558 MIR1-1HG-202ENST00000624914 1220 ntTSL 1 (best) BASIC28.53■■■□□ 2.16
PGK1P00558 TMEM150A-202ENST00000334462 1518 ntAPPRIS P1 TSL 1 (best) BASIC28.53■■■□□ 2.16
PGK1P00558 AC107214.1-201ENST00000457303 559 ntTSL 1 (best) BASIC28.52■■■□□ 2.16
PGK1P00558 AC126177.7-201ENST00000547904 679 ntBASIC28.52■■■□□ 2.16
PGK1P00558 KLF16-204ENST00000617223 1133 ntAPPRIS P1 TSL 1 (best) BASIC28.52■■■□□ 2.16
PGK1P00558 ZBTB7A-202ENST00000601588 2083 ntAPPRIS P1 TSL 1 (best) BASIC28.52■■■□□ 2.16
PGK1P00558 FEZ1-201ENST00000278919 1748 ntAPPRIS P1 TSL 1 (best) BASIC28.52■■■□□ 2.16
PGK1P00558 ZDHHC3-203ENST00000342790 1336 ntTSL 5 BASIC28.5■■■□□ 2.15
PGK1P00558 OXLD1-201ENST00000374741 620 ntAPPRIS P1 TSL 1 (best) BASIC28.5■■■□□ 2.15
PGK1P00558 KMT2E-AS1-201ENST00000453677 736 ntTSL 3 BASIC28.5■■■□□ 2.15
PGK1P00558 AL157400.5-201ENST00000507624 621 ntBASIC28.5■■■□□ 2.15
PGK1P00558 FAM222B-205ENST00000577682 549 ntTSL 4 BASIC28.5■■■□□ 2.15
PGK1P00558 IFI30-201ENST00000407280 1134 ntAPPRIS P1 TSL 1 (best) BASIC28.49■■■□□ 2.15
PGK1P00558 ZNF787-203ENST00000610935 1925 ntAPPRIS P1 TSL 1 (best) BASIC28.49■■■□□ 2.15
PGK1P00558 ITPKA-201ENST00000260386 1824 ntAPPRIS P1 TSL 1 (best) BASIC28.48■■■□□ 2.15
PGK1P00558 LOR-201ENST00000368742 1230 ntAPPRIS P1 TSL 1 (best) BASIC28.48■■■□□ 2.15
PGK1P00558 TUSC1-201ENST00000358022 2052 ntAPPRIS P1 BASIC28.47■■■□□ 2.15
PGK1P00558 CIB2-201ENST00000258930 1598 ntAPPRIS P1 TSL 1 (best) BASIC28.47■■■□□ 2.15
PGK1P00558 FAM78B-201ENST00000338353 1597 ntAPPRIS P1 TSL 1 (best) BASIC28.47■■■□□ 2.15
PGK1P00558 RPUSD1-208ENST00000567114 1835 ntTSL 2 BASIC28.47■■■□□ 2.15
PGK1P00558 HOXD8-201ENST00000313173 1917 ntAPPRIS P3 TSL 2 BASIC28.47■■■□□ 2.15
PGK1P00558 EMX1-201ENST00000258106 2188 ntAPPRIS P1 TSL 1 (best) BASIC28.47■■■□□ 2.15
PGK1P00558 TNFRSF12A-201ENST00000326577 1033 ntAPPRIS P1 TSL 1 (best) BASIC28.46■■■□□ 2.15
PGK1P00558 LYPD6B-204ENST00000409876 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC28.46■■■□□ 2.15
Retrieved 100 of 98,524 protein–RNA pairs in 7.5 ms