Protein–RNA interactions for Protein: A6NFN3

RBFOX3, RNA binding protein fox-1 homolog 3, humanhuman

Predictions only

Length 312 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RBFOX3A6NFN3 TMEM185A-208ENST00000611119 2662 ntTSL 2 BASIC20.08■□□□□ 0.8
RBFOX3A6NFN3 GDF1-201ENST00000247005 2517 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
RBFOX3A6NFN3 CERS1-204ENST00000623882 2517 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
RBFOX3A6NFN3 CHMP4B-201ENST00000217402 1646 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
RBFOX3A6NFN3 XKR6-201ENST00000297303 1550 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
RBFOX3A6NFN3 AARD-201ENST00000378279 2299 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
RBFOX3A6NFN3 SLC22A23-201ENST00000380298 1574 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
RBFOX3A6NFN3 PABPN1-202ENST00000397276 2768 ntAPPRIS ALT1 TSL 1 (best) BASIC20.06■□□□□ 0.8
RBFOX3A6NFN3 ANO1-202ENST00000355303 4790 ntAPPRIS P2 TSL 1 (best) BASIC20.06■□□□□ 0.8
RBFOX3A6NFN3 RTN2-208ENST00000590526 2357 ntTSL 5 BASIC20.06■□□□□ 0.8
RBFOX3A6NFN3 PELI3-203ENST00000524466 1671 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
RBFOX3A6NFN3 GTPBP3-203ENST00000361619 1894 ntTSL 2 BASIC20.05■□□□□ 0.8
RBFOX3A6NFN3 PPM1B-202ENST00000345249 1713 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
RBFOX3A6NFN3 HAS1-205ENST00000601714 2086 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
RBFOX3A6NFN3 IRX4-202ENST00000505790 2538 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
RBFOX3A6NFN3 AC006455.5-202ENST00000615248 2284 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
RBFOX3A6NFN3 MYPOP-201ENST00000322217 1890 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
RBFOX3A6NFN3 SYT7-203ENST00000539008 2061 ntTSL 5 BASIC20.03■□□□□ 0.8
RBFOX3A6NFN3 KAT8-206ENST00000543774 1846 ntAPPRIS P1 TSL 5 BASIC20.03■□□□□ 0.8
RBFOX3A6NFN3 ARL2-SNX15-201ENST00000301886 2392 ntAPPRIS P1 TSL 2 BASIC20.03■□□□□ 0.8
RBFOX3A6NFN3 ZNF639-209ENST00000496856 2033 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
RBFOX3A6NFN3 PCYT2-202ENST00000538721 1765 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
RBFOX3A6NFN3 BTBD2-201ENST00000255608 2649 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
RBFOX3A6NFN3 NPTXR-202ENST00000640136 1503 ntAPPRIS P2 TSL 1 (best) BASIC20.02■□□□□ 0.8
RBFOX3A6NFN3 NFKBIE-201ENST00000275015 2581 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
RBFOX3A6NFN3 DYRK1B-201ENST00000323039 2535 ntAPPRIS P3 TSL 1 (best) BASIC20.02■□□□□ 0.8
RBFOX3A6NFN3 HDAC3-201ENST00000305264 1959 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
RBFOX3A6NFN3 MXRA7-202ENST00000375036 1950 ntAPPRIS ALT2 TSL 2 BASIC20.02■□□□□ 0.8
RBFOX3A6NFN3 CCDC136-206ENST00000464832 1720 ntAPPRIS ALT2 TSL 5 BASIC20.02■□□□□ 0.79
RBFOX3A6NFN3 KCNC3-201ENST00000376959 5447 ntAPPRIS ALT2 TSL 5 BASIC20.01■□□□□ 0.79
RBFOX3A6NFN3 ZDHHC14-204ENST00000414563 3134 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
RBFOX3A6NFN3 SATB1-AS1-216ENST00000598149 1119 ntTSL 2 BASIC20.01■□□□□ 0.79
RBFOX3A6NFN3 UNCX-201ENST00000316333 2048 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
RBFOX3A6NFN3 GAL3ST1-204ENST00000402369 1712 ntAPPRIS P1 TSL 3 BASIC20.01■□□□□ 0.79
RBFOX3A6NFN3 PCYT2-206ENST00000571105 1628 ntTSL 5 BASIC20.01■□□□□ 0.79
RBFOX3A6NFN3 COPS6-201ENST00000303904 1432 ntAPPRIS P2 TSL 1 (best) BASIC20.01■□□□□ 0.79
RBFOX3A6NFN3 NRG1-210ENST00000520407 1955 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
RBFOX3A6NFN3 FHL2-202ENST00000344213 1769 ntTSL 1 (best) BASIC20■□□□□ 0.79
RBFOX3A6NFN3 HNRNPAB-205ENST00000506259 1674 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
RBFOX3A6NFN3 CDK9-201ENST00000373264 2463 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
RBFOX3A6NFN3 UBE2J2-202ENST00000349431 1733 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
RBFOX3A6NFN3 GATA4-209ENST00000622443 1982 ntTSL 5 BASIC20■□□□□ 0.79
RBFOX3A6NFN3 APLP1-201ENST00000221891 2495 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
RBFOX3A6NFN3 TSEN34-204ENST00000429671 1912 ntTSL 2 BASIC20■□□□□ 0.79
RBFOX3A6NFN3 NECTIN2-202ENST00000252485 2112 ntAPPRIS P3 TSL 1 (best) BASIC19.99■□□□□ 0.79
RBFOX3A6NFN3 AL360182.2-201ENST00000451656 470 ntTSL 3 BASIC19.99■□□□□ 0.79
RBFOX3A6NFN3 HABP4-202ENST00000375251 2304 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
RBFOX3A6NFN3 GBX2-201ENST00000306318 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
RBFOX3A6NFN3 C11orf95-202ENST00000433688 5716 ntAPPRIS P1 TSL 5 BASIC19.99■□□□□ 0.79
RBFOX3A6NFN3 EPM2A-209ENST00000638262 2679 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
RBFOX3A6NFN3 RARA-202ENST00000394081 2285 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
RBFOX3A6NFN3 USP25-203ENST00000351097 2158 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
RBFOX3A6NFN3 ST7-201ENST00000265437 2899 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
RBFOX3A6NFN3 CCDC61-204ENST00000595358 1817 ntAPPRIS P2 TSL 5 BASIC19.97■□□□□ 0.79
RBFOX3A6NFN3 ABHD17C-201ENST00000258884 2368 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
RBFOX3A6NFN3 TNFRSF25-204ENST00000356876 1625 ntAPPRIS ALT2 TSL 1 (best) BASIC19.96■□□□□ 0.79
RBFOX3A6NFN3 RARA-203ENST00000394086 2008 ntTSL 2 BASIC19.96■□□□□ 0.79
RBFOX3A6NFN3 PWWP2B-201ENST00000305233 2651 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
RBFOX3A6NFN3 AP004833.2-201ENST00000532228 1454 ntBASIC19.95■□□□□ 0.78
RBFOX3A6NFN3 KREMEN2-204ENST00000572045 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC19.95■□□□□ 0.78
RBFOX3A6NFN3 GNB1-210ENST00000615252 3048 ntTSL 5 BASIC19.95■□□□□ 0.78
RBFOX3A6NFN3 NOP53-201ENST00000246802 1528 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
RBFOX3A6NFN3 CADPS-203ENST00000383710 5471 ntAPPRIS ALT2 TSL 1 (best) BASIC19.95■□□□□ 0.78
RBFOX3A6NFN3 RALY-201ENST00000246194 1789 ntAPPRIS P4 TSL 1 (best) BASIC19.95■□□□□ 0.78
RBFOX3A6NFN3 TRIM54-201ENST00000296098 2027 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
RBFOX3A6NFN3 PRR5-ARHGAP8-202ENST00000361473 2013 ntTSL 5 BASIC19.95■□□□□ 0.78
RBFOX3A6NFN3 CTBP2-211ENST00000494626 2014 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
RBFOX3A6NFN3 DLX2-202ENST00000466293 1852 ntTSL 2 BASIC19.94■□□□□ 0.78
RBFOX3A6NFN3 LINC01578-203ENST00000554669 578 ntTSL 5 BASIC19.94■□□□□ 0.78
RBFOX3A6NFN3 BIN1-205ENST00000351659 2365 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
RBFOX3A6NFN3 CPLX1-201ENST00000304062 2181 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
RBFOX3A6NFN3 MPP6-203ENST00000409761 1703 ntTSL 5 BASIC19.93■□□□□ 0.78
RBFOX3A6NFN3 DSG2-201ENST00000261590 5831 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
RBFOX3A6NFN3 CGREF1-204ENST00000402550 1575 ntTSL 2 BASIC19.93■□□□□ 0.78
RBFOX3A6NFN3 PHF20L1-207ENST00000395379 1998 ntTSL 5 BASIC19.93■□□□□ 0.78
RBFOX3A6NFN3 ZC3H14-202ENST00000302216 2560 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
RBFOX3A6NFN3 TNFRSF25-205ENST00000377782 1632 ntAPPRIS P4 TSL 1 (best) BASIC19.92■□□□□ 0.78
RBFOX3A6NFN3 RABL6-202ENST00000357466 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
RBFOX3A6NFN3 PLPP2-203ENST00000434325 1383 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
RBFOX3A6NFN3 FAM89B-201ENST00000316409 1409 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
RBFOX3A6NFN3 SRR-201ENST00000344595 2728 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
RBFOX3A6NFN3 HMCES-202ENST00000389735 1763 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
RBFOX3A6NFN3 SPIRE2-205ENST00000563972 1823 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
RBFOX3A6NFN3 THRA-202ENST00000394121 2260 ntTSL 2 BASIC19.91■□□□□ 0.78
RBFOX3A6NFN3 AC010864.1-201ENST00000609407 1511 ntBASIC19.91■□□□□ 0.78
RBFOX3A6NFN3 ACSF2-203ENST00000502667 2098 ntTSL 2 BASIC19.9■□□□□ 0.78
RBFOX3A6NFN3 BIN1-203ENST00000346226 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
RBFOX3A6NFN3 IRAK1-205ENST00000429936 2127 ntTSL 5 BASIC19.9■□□□□ 0.78
RBFOX3A6NFN3 EGR4-201ENST00000436467 2377 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
RBFOX3A6NFN3 SLCO3A1-201ENST00000318445 5115 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
RBFOX3A6NFN3 GRIN2D-201ENST00000263269 5093 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
RBFOX3A6NFN3 NRARP-201ENST00000356628 1770 ntAPPRIS P1 BASIC19.89■□□□□ 0.77
RBFOX3A6NFN3 RSG1-201ENST00000375599 1545 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
RBFOX3A6NFN3 CUEDC1-202ENST00000407144 2190 ntAPPRIS P1 TSL 5 BASIC19.89■□□□□ 0.77
RBFOX3A6NFN3 DHFR-203ENST00000505337 1719 ntAPPRIS P1 TSL 2 BASIC19.89■□□□□ 0.77
RBFOX3A6NFN3 AEBP2-204ENST00000398864 5099 ntAPPRIS P4 TSL 1 (best) BASIC19.89■□□□□ 0.77
RBFOX3A6NFN3 ANKRD54-201ENST00000215941 2184 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
RBFOX3A6NFN3 CDPF1-201ENST00000314567 1875 ntAPPRIS P2 TSL 1 (best) BASIC19.88■□□□□ 0.77
RBFOX3A6NFN3 DNPEP-201ENST00000273075 2425 ntAPPRIS P3 TSL 1 (best) BASIC19.88■□□□□ 0.77
RBFOX3A6NFN3 IGFBP3-201ENST00000275521 2262 ntAPPRIS P3 TSL 1 (best) BASIC19.88■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 50.5 ms