Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC18.52■□□□□ 0.56
VPS4AQ9UN37 MAPK8IP3-202ENST00000356010 4456 ntTSL 5 BASIC18.52■□□□□ 0.56
VPS4AQ9UN37 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
VPS4AQ9UN37 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC18.52■□□□□ 0.56
VPS4AQ9UN37 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC18.52■□□□□ 0.56
VPS4AQ9UN37 CABP2-202ENST00000353903 789 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.56
VPS4AQ9UN37 METTL21A-207ENST00000442521 1003 ntAPPRIS P1 TSL 2 BASIC18.52■□□□□ 0.56
VPS4AQ9UN37 C5orf38-206ENST00000505778 509 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.56
VPS4AQ9UN37 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC18.52■□□□□ 0.56
VPS4AQ9UN37 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC18.52■□□□□ 0.56
VPS4AQ9UN37 RARRES2P10-201ENST00000564312 460 ntBASIC18.52■□□□□ 0.56
VPS4AQ9UN37 AL049597.2-201ENST00000565575 961 ntBASIC18.52■□□□□ 0.56
VPS4AQ9UN37 RMI2-205ENST00000576027 818 ntTSL 2 BASIC18.52■□□□□ 0.56
VPS4AQ9UN37 AC020922.2-201ENST00000596786 359 ntTSL 4 BASIC18.52■□□□□ 0.56
VPS4AQ9UN37 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC18.52■□□□□ 0.56
VPS4AQ9UN37 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC18.52■□□□□ 0.56
VPS4AQ9UN37 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
VPS4AQ9UN37 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.56
VPS4AQ9UN37 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC18.52■□□□□ 0.56
VPS4AQ9UN37 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC18.52■□□□□ 0.56
VPS4AQ9UN37 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC18.52■□□□□ 0.55
VPS4AQ9UN37 TNXA-203ENST00000507684 2038 ntBASIC18.52■□□□□ 0.55
VPS4AQ9UN37 NAT16-201ENST00000300303 2935 ntAPPRIS P2 TSL 2 BASIC18.52■□□□□ 0.55
VPS4AQ9UN37 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
VPS4AQ9UN37 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
VPS4AQ9UN37 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
VPS4AQ9UN37 PTGES2-AS1-201ENST00000443493 2100 ntBASIC18.52■□□□□ 0.55
VPS4AQ9UN37 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
VPS4AQ9UN37 ADAMTS8-201ENST00000257359 4010 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
VPS4AQ9UN37 FAM187A-202ENST00000412523 1748 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
VPS4AQ9UN37 EVX1-202ENST00000496902 2955 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
VPS4AQ9UN37 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
VPS4AQ9UN37 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
VPS4AQ9UN37 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
VPS4AQ9UN37 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC18.51■□□□□ 0.55
VPS4AQ9UN37 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC18.51■□□□□ 0.55
VPS4AQ9UN37 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
VPS4AQ9UN37 C17orf58-201ENST00000334461 1535 ntTSL 2 BASIC18.51■□□□□ 0.55
VPS4AQ9UN37 TTC34-201ENST00000401095 8814 ntAPPRIS ALT2 TSL 5 BASIC18.51■□□□□ 0.55
VPS4AQ9UN37 BSX-201ENST00000343035 830 ntAPPRIS P1 TSL 5 BASIC18.51■□□□□ 0.55
VPS4AQ9UN37 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC18.51■□□□□ 0.55
VPS4AQ9UN37 PENK-204ENST00000518770 863 ntTSL 2 BASIC18.51■□□□□ 0.55
VPS4AQ9UN37 CBLN3-202ENST00000555436 718 ntTSL 3 BASIC18.51■□□□□ 0.55
VPS4AQ9UN37 SEC23A-AS1-201ENST00000557350 500 ntTSL 3 BASIC18.51■□□□□ 0.55
VPS4AQ9UN37 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC18.51■□□□□ 0.55
VPS4AQ9UN37 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC18.51■□□□□ 0.55
VPS4AQ9UN37 NDUFV3-202ENST00000354250 1575 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
VPS4AQ9UN37 TCERG1L-201ENST00000368642 2618 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
VPS4AQ9UN37 AC116351.2-201ENST00000606540 1585 ntBASIC18.51■□□□□ 0.55
VPS4AQ9UN37 GOLPH3-201ENST00000265070 2721 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
VPS4AQ9UN37 FAM131C-201ENST00000375662 1695 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
VPS4AQ9UN37 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC18.5■□□□□ 0.55
VPS4AQ9UN37 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC18.5■□□□□ 0.55
VPS4AQ9UN37 CABP7-201ENST00000216144 3259 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
VPS4AQ9UN37 DMRT2-204ENST00000382251 2292 ntAPPRIS P1 TSL 5 BASIC18.5■□□□□ 0.55
VPS4AQ9UN37 C11orf86-201ENST00000308963 1187 ntAPPRIS P1 TSL 2 BASIC18.5■□□□□ 0.55
VPS4AQ9UN37 CLTA-202ENST00000345519 1073 ntAPPRIS ALT1 TSL 1 (best) BASIC18.5■□□□□ 0.55
VPS4AQ9UN37 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
VPS4AQ9UN37 PSMG1-202ENST00000380900 907 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
VPS4AQ9UN37 CALM3-202ENST00000391918 702 ntTSL 2 BASIC18.5■□□□□ 0.55
VPS4AQ9UN37 PDCD2-202ENST00000392090 936 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
VPS4AQ9UN37 NDUFA13-201ENST00000428459 576 ntTSL 2 BASIC18.5■□□□□ 0.55
VPS4AQ9UN37 AC008443.1-203ENST00000505151 886 ntTSL 2 BASIC18.5■□□□□ 0.55
VPS4AQ9UN37 TPD52L1-207ENST00000527711 999 ntTSL 2 BASIC18.5■□□□□ 0.55
VPS4AQ9UN37 FAU-207ENST00000529639 847 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
VPS4AQ9UN37 TMEM191C-212ENST00000536718 480 ntAPPRIS ALT2 TSL 5 BASIC18.5■□□□□ 0.55
VPS4AQ9UN37 MLF2-210ENST00000542154 838 ntAPPRIS P1 TSL 5 BASIC18.5■□□□□ 0.55
VPS4AQ9UN37 RN7SL850P-201ENST00000579959 291 ntBASIC18.5■□□□□ 0.55
VPS4AQ9UN37 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC18.5■□□□□ 0.55
VPS4AQ9UN37 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC18.5■□□□□ 0.55
VPS4AQ9UN37 KLF2-202ENST00000592003 564 ntTSL 3 BASIC18.5■□□□□ 0.55
VPS4AQ9UN37 TMEM191B-203ENST00000613597 366 ntAPPRIS ALT2 TSL 5 BASIC18.5■□□□□ 0.55
VPS4AQ9UN37 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
VPS4AQ9UN37 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC18.5■□□□□ 0.55
VPS4AQ9UN37 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC18.5■□□□□ 0.55
VPS4AQ9UN37 P2RY6-212ENST00000618468 2431 ntAPPRIS P1 TSL 3 BASIC18.5■□□□□ 0.55
VPS4AQ9UN37 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC18.5■□□□□ 0.55
VPS4AQ9UN37 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC18.5■□□□□ 0.55
VPS4AQ9UN37 UBE2QL1-201ENST00000399816 4317 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
VPS4AQ9UN37 RREB1-201ENST00000334984 5789 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
VPS4AQ9UN37 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
VPS4AQ9UN37 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
VPS4AQ9UN37 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
VPS4AQ9UN37 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC18.49■□□□□ 0.55
VPS4AQ9UN37 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC18.49■□□□□ 0.55
VPS4AQ9UN37 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC18.49■□□□□ 0.55
VPS4AQ9UN37 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
VPS4AQ9UN37 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC18.49■□□□□ 0.55
VPS4AQ9UN37 HCG11-201ENST00000411553 5696 ntBASIC18.49■□□□□ 0.55
VPS4AQ9UN37 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC18.49■□□□□ 0.55
VPS4AQ9UN37 RNF5-203ENST00000375094 1168 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
VPS4AQ9UN37 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC18.49■□□□□ 0.55
VPS4AQ9UN37 CHCHD10-201ENST00000401675 691 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
VPS4AQ9UN37 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC18.49■□□□□ 0.55
VPS4AQ9UN37 GOLGA2P7-203ENST00000557881 896 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
VPS4AQ9UN37 AC015712.2-203ENST00000560461 688 ntTSL 3 BASIC18.49■□□□□ 0.55
VPS4AQ9UN37 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC18.49■□□□□ 0.55
VPS4AQ9UN37 AC120498.8-201ENST00000614275 531 ntBASIC18.49■□□□□ 0.55
VPS4AQ9UN37 GOLGA2P10-205ENST00000618267 983 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
VPS4AQ9UN37 ST3GAL4-205ENST00000449406 1669 ntTSL 5 BASIC18.49■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 46.8 ms