Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 FAM86EP-206ENST00000510506 987 ntBASIC19.73■□□□□ 0.75
TDP1Q9NUW8 CD320-202ENST00000537716 1119 ntTSL 2 BASIC19.73■□□□□ 0.75
TDP1Q9NUW8 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC19.73■□□□□ 0.75
TDP1Q9NUW8 FAM104A-205ENST00000581110 512 ntTSL 2 BASIC19.73■□□□□ 0.75
TDP1Q9NUW8 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
TDP1Q9NUW8 SPATA6L-207ENST00000475086 1444 ntAPPRIS P1 TSL 2 BASIC19.73■□□□□ 0.75
TDP1Q9NUW8 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
TDP1Q9NUW8 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
TDP1Q9NUW8 ART1-201ENST00000250693 1312 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
TDP1Q9NUW8 SCFD2-204ENST00000611795 1320 ntTSL 5 BASIC19.73■□□□□ 0.75
TDP1Q9NUW8 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
TDP1Q9NUW8 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
TDP1Q9NUW8 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
TDP1Q9NUW8 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
TDP1Q9NUW8 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC19.72■□□□□ 0.75
TDP1Q9NUW8 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
TDP1Q9NUW8 GUCA1B-201ENST00000230361 1113 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
TDP1Q9NUW8 NPM3-201ENST00000370110 877 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
TDP1Q9NUW8 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
TDP1Q9NUW8 NT5C2-211ENST00000470299 249 ntTSL 5 BASIC19.72■□□□□ 0.75
TDP1Q9NUW8 MIR4674-201ENST00000582457 87 ntBASIC19.72■□□□□ 0.75
TDP1Q9NUW8 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC19.72■□□□□ 0.75
TDP1Q9NUW8 ZNF575-205ENST00000601282 1086 ntAPPRIS P1 TSL 2 BASIC19.72■□□□□ 0.75
TDP1Q9NUW8 SPINK2-207ENST00000631082 392 ntTSL 5 BASIC19.72■□□□□ 0.75
TDP1Q9NUW8 DISC1-212ENST00000535983 2505 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
TDP1Q9NUW8 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC19.72■□□□□ 0.75
TDP1Q9NUW8 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC19.72■□□□□ 0.75
TDP1Q9NUW8 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC19.72■□□□□ 0.75
TDP1Q9NUW8 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
TDP1Q9NUW8 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
TDP1Q9NUW8 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC19.72■□□□□ 0.75
TDP1Q9NUW8 ABCC5-204ENST00000392579 1848 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
TDP1Q9NUW8 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC19.71■□□□□ 0.75
TDP1Q9NUW8 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
TDP1Q9NUW8 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC19.71■□□□□ 0.75
TDP1Q9NUW8 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
TDP1Q9NUW8 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
TDP1Q9NUW8 FKBP8-206ENST00000596558 1756 ntAPPRIS ALT1 TSL 2 BASIC19.71■□□□□ 0.75
TDP1Q9NUW8 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC19.71■□□□□ 0.75
TDP1Q9NUW8 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC19.71■□□□□ 0.75
TDP1Q9NUW8 NDUFA1-201ENST00000371437 766 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
TDP1Q9NUW8 PCED1CP-201ENST00000419887 785 ntBASIC19.71■□□□□ 0.75
TDP1Q9NUW8 ST6GALNAC4P1-201ENST00000435385 499 ntBASIC19.71■□□□□ 0.75
TDP1Q9NUW8 KRT18P38-201ENST00000449496 1282 ntBASIC19.71■□□□□ 0.75
TDP1Q9NUW8 MAP3K13-213ENST00000454237 526 ntTSL 3 BASIC19.71■□□□□ 0.75
TDP1Q9NUW8 SNX5-210ENST00000481323 562 ntTSL 3 BASIC19.71■□□□□ 0.75
TDP1Q9NUW8 FAM53C-211ENST00000513056 923 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
TDP1Q9NUW8 TMEM218-206ENST00000527766 812 ntAPPRIS P1 TSL 3 BASIC19.71■□□□□ 0.75
TDP1Q9NUW8 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
TDP1Q9NUW8 AP000777.3-201ENST00000538705 491 ntTSL 3 BASIC19.71■□□□□ 0.75
TDP1Q9NUW8 CENPS-CORT-205ENST00000602787 571 ntAPPRIS P1 TSL 3 BASIC19.71■□□□□ 0.75
TDP1Q9NUW8 AC027682.6-202ENST00000621378 795 ntTSL 2 BASIC19.71■□□□□ 0.75
TDP1Q9NUW8 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
TDP1Q9NUW8 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
TDP1Q9NUW8 SLC1A5-203ENST00000542575 2882 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
TDP1Q9NUW8 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
TDP1Q9NUW8 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC19.71■□□□□ 0.75
TDP1Q9NUW8 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC19.71■□□□□ 0.75
TDP1Q9NUW8 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC19.71■□□□□ 0.75
TDP1Q9NUW8 LSR-214ENST00000621372 2274 ntAPPRIS P4 TSL 1 (best) BASIC19.71■□□□□ 0.75
TDP1Q9NUW8 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC19.71■□□□□ 0.74
TDP1Q9NUW8 CRELD2-201ENST00000328268 1357 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
TDP1Q9NUW8 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
TDP1Q9NUW8 LMNB1-202ENST00000395354 1572 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
TDP1Q9NUW8 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC19.7■□□□□ 0.74
TDP1Q9NUW8 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC19.7■□□□□ 0.74
TDP1Q9NUW8 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC19.7■□□□□ 0.74
TDP1Q9NUW8 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
TDP1Q9NUW8 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC19.7■□□□□ 0.74
TDP1Q9NUW8 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC19.7■□□□□ 0.74
TDP1Q9NUW8 ISCA1-202ENST00000326094 1264 ntTSL 3 BASIC19.7■□□□□ 0.74
TDP1Q9NUW8 KRTAP5-10-201ENST00000398531 1176 ntAPPRIS P1 BASIC19.7■□□□□ 0.74
TDP1Q9NUW8 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
TDP1Q9NUW8 EEF1D-243ENST00000532400 419 ntTSL 3 BASIC19.7■□□□□ 0.74
TDP1Q9NUW8 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC19.7■□□□□ 0.74
TDP1Q9NUW8 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
TDP1Q9NUW8 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC19.7■□□□□ 0.74
TDP1Q9NUW8 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC19.7■□□□□ 0.74
TDP1Q9NUW8 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
TDP1Q9NUW8 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC19.7■□□□□ 0.74
TDP1Q9NUW8 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
TDP1Q9NUW8 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
TDP1Q9NUW8 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC19.7■□□□□ 0.74
TDP1Q9NUW8 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
TDP1Q9NUW8 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC19.69■□□□□ 0.74
TDP1Q9NUW8 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
TDP1Q9NUW8 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
TDP1Q9NUW8 KRT18-207ENST00000550600 1696 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
TDP1Q9NUW8 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
TDP1Q9NUW8 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC19.69■□□□□ 0.74
TDP1Q9NUW8 D2HGDH-201ENST00000321264 2617 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
TDP1Q9NUW8 TSPAN14-202ENST00000341863 1037 ntTSL 5 BASIC19.69■□□□□ 0.74
TDP1Q9NUW8 GPX4-201ENST00000354171 919 ntAPPRIS P2 TSL 1 (best) BASIC19.69■□□□□ 0.74
TDP1Q9NUW8 MADCAM1-203ENST00000382683 603 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
TDP1Q9NUW8 COPS8-203ENST00000409334 794 ntTSL 5 BASIC19.69■□□□□ 0.74
TDP1Q9NUW8 EHMT1-211ENST00000482340 691 ntTSL 5 BASIC19.69■□□□□ 0.74
TDP1Q9NUW8 KRTCAP3-207ENST00000543753 956 ntAPPRIS P1 TSL 5 BASIC19.69■□□□□ 0.74
TDP1Q9NUW8 C17orf49-208ENST00000552402 760 ntTSL 2 BASIC19.69■□□□□ 0.74
TDP1Q9NUW8 GCSHP2-201ENST00000560971 527 ntBASIC19.69■□□□□ 0.74
TDP1Q9NUW8 BCL2L12-208ENST00000600947 633 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 38.6 ms