Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 PLIN5-201ENST00000381848 2470 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
SIX2Q9NPC8 NIFKP9-201ENST00000419265 221 ntBASIC20.57■□□□□ 0.88
SIX2Q9NPC8 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC20.57■□□□□ 0.88
SIX2Q9NPC8 RPS2P4-201ENST00000476944 856 ntBASIC20.57■□□□□ 0.88
SIX2Q9NPC8 GLRB-205ENST00000512619 728 ntTSL 3 BASIC20.57■□□□□ 0.88
SIX2Q9NPC8 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC20.57■□□□□ 0.88
SIX2Q9NPC8 RPPH1-201ENST00000516869 333 ntBASIC20.57■□□□□ 0.88
SIX2Q9NPC8 TK2-204ENST00000525974 1178 ntTSL 2 BASIC20.57■□□□□ 0.88
SIX2Q9NPC8 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC20.57■□□□□ 0.88
SIX2Q9NPC8 UBE2E3-209ENST00000602710 1556 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
SIX2Q9NPC8 PRODH-215ENST00000610940 2405 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
SIX2Q9NPC8 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
SIX2Q9NPC8 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
SIX2Q9NPC8 AGTR1-201ENST00000349243 2356 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
SIX2Q9NPC8 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC20.57■□□□□ 0.88
SIX2Q9NPC8 EI24-201ENST00000278903 2455 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SIX2Q9NPC8 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
SIX2Q9NPC8 COBL-202ENST00000395540 2332 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
SIX2Q9NPC8 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
SIX2Q9NPC8 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC20.56■□□□□ 0.88
SIX2Q9NPC8 HTR7P1-201ENST00000538670 1336 ntBASIC20.56■□□□□ 0.88
SIX2Q9NPC8 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC20.56■□□□□ 0.88
SIX2Q9NPC8 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SIX2Q9NPC8 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SIX2Q9NPC8 METRN-204ENST00000568223 3325 ntAPPRIS P2 TSL 1 (best) BASIC20.56■□□□□ 0.88
SIX2Q9NPC8 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
SIX2Q9NPC8 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SIX2Q9NPC8 PTPRCAP-201ENST00000326294 1292 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SIX2Q9NPC8 INS-203ENST00000397262 639 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SIX2Q9NPC8 STK24-AS1-201ENST00000434547 1278 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
SIX2Q9NPC8 AC073111.3-201ENST00000478789 635 ntAPPRIS P1 TSL 3 BASIC20.56■□□□□ 0.88
SIX2Q9NPC8 LINC01301-204ENST00000530725 577 ntTSL 4 BASIC20.56■□□□□ 0.88
SIX2Q9NPC8 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC20.56■□□□□ 0.88
SIX2Q9NPC8 PARS2-201ENST00000371279 2347 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SIX2Q9NPC8 IFRD2-204ENST00000436390 2275 ntAPPRIS P1 TSL 2 BASIC20.56■□□□□ 0.88
SIX2Q9NPC8 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC20.56■□□□□ 0.88
SIX2Q9NPC8 TCP11-204ENST00000373979 1882 ntAPPRIS P3 TSL 5 BASIC20.56■□□□□ 0.88
SIX2Q9NPC8 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
SIX2Q9NPC8 PPP2R5A-201ENST00000261461 3128 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SIX2Q9NPC8 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
SIX2Q9NPC8 P2RX3-204ENST00000616487 1346 ntTSL 5 BASIC20.55■□□□□ 0.88
SIX2Q9NPC8 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
SIX2Q9NPC8 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC20.55■□□□□ 0.88
SIX2Q9NPC8 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
SIX2Q9NPC8 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
SIX2Q9NPC8 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC20.55■□□□□ 0.88
SIX2Q9NPC8 CMTM8-201ENST00000307526 1174 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
SIX2Q9NPC8 PTPA-216ENST00000432651 857 ntTSL 2 BASIC20.55■□□□□ 0.88
SIX2Q9NPC8 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC20.55■□□□□ 0.88
SIX2Q9NPC8 FDX2-207ENST00000494368 584 ntTSL 4 BASIC20.55■□□□□ 0.88
SIX2Q9NPC8 C14orf144-202ENST00000555282 854 ntTSL 3 BASIC20.55■□□□□ 0.88
SIX2Q9NPC8 AL353708.3-201ENST00000610272 989 ntBASIC20.55■□□□□ 0.88
SIX2Q9NPC8 KRTAP5-11-203ENST00000617152 558 ntAPPRIS ALT2 TSL 5 BASIC20.55■□□□□ 0.88
SIX2Q9NPC8 ABBA01031674.1-201ENST00000635145 728 ntBASIC20.55■□□□□ 0.88
SIX2Q9NPC8 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
SIX2Q9NPC8 PLIN2-201ENST00000276914 1972 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
SIX2Q9NPC8 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
SIX2Q9NPC8 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
SIX2Q9NPC8 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC20.55■□□□□ 0.88
SIX2Q9NPC8 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC20.55■□□□□ 0.88
SIX2Q9NPC8 KRT15-203ENST00000393976 2394 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
SIX2Q9NPC8 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SIX2Q9NPC8 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC20.54■□□□□ 0.88
SIX2Q9NPC8 COQ10B-201ENST00000263960 2239 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SIX2Q9NPC8 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC20.54■□□□□ 0.88
SIX2Q9NPC8 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
SIX2Q9NPC8 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SIX2Q9NPC8 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SIX2Q9NPC8 TMEM74-201ENST00000297459 1741 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SIX2Q9NPC8 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC20.54■□□□□ 0.88
SIX2Q9NPC8 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SIX2Q9NPC8 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SIX2Q9NPC8 TSPY20P-201ENST00000450910 630 ntBASIC20.54■□□□□ 0.88
SIX2Q9NPC8 NDUFA13-203ENST00000503283 825 ntTSL 2 BASIC20.54■□□□□ 0.88
SIX2Q9NPC8 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC20.54■□□□□ 0.88
SIX2Q9NPC8 RNF121-214ENST00000533380 870 ntTSL 3 BASIC20.54■□□□□ 0.88
SIX2Q9NPC8 DCTPP1-205ENST00000568973 878 ntTSL 2 BASIC20.54■□□□□ 0.88
SIX2Q9NPC8 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SIX2Q9NPC8 ENOPH1-201ENST00000273920 2025 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SIX2Q9NPC8 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC20.54■□□□□ 0.88
SIX2Q9NPC8 TSPAN4-204ENST00000397404 1462 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
SIX2Q9NPC8 PSRC1-202ENST00000369904 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
SIX2Q9NPC8 RAX2-201ENST00000555633 2414 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SIX2Q9NPC8 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC20.54■□□□□ 0.88
SIX2Q9NPC8 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC20.54■□□□□ 0.88
SIX2Q9NPC8 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SIX2Q9NPC8 SLC38A10-201ENST00000288439 2708 ntAPPRIS P3 TSL 1 (best) BASIC20.54■□□□□ 0.88
SIX2Q9NPC8 ADAP1-205ENST00000449296 2093 ntTSL 2 BASIC20.54■□□□□ 0.88
SIX2Q9NPC8 DCLK2-207ENST00000635524 2153 ntAPPRIS ALT2 TSL 5 BASIC20.53■□□□□ 0.88
SIX2Q9NPC8 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC20.53■□□□□ 0.88
SIX2Q9NPC8 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
SIX2Q9NPC8 KRT8P11-201ENST00000409686 1436 ntBASIC20.53■□□□□ 0.88
SIX2Q9NPC8 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
SIX2Q9NPC8 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC20.53■□□□□ 0.88
SIX2Q9NPC8 CYP2D7-203ENST00000433992 1740 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
SIX2Q9NPC8 CYP2D7-207ENST00000612115 1734 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
SIX2Q9NPC8 USP49-202ENST00000373010 2446 ntTSL 5 BASIC20.53■□□□□ 0.88
SIX2Q9NPC8 NT5C3B-203ENST00000435506 975 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
SIX2Q9NPC8 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
SIX2Q9NPC8 CNOT8-224ENST00000523698 862 ntTSL 2 BASIC20.53■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 22.9 ms