Protein–RNA interactions for Protein: Q9BRP4

PAAF1, Proteasomal ATPase-associated factor 1, humanhuman

Predictions only

Length 392 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PAAF1Q9BRP4 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
PAAF1Q9BRP4 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC20.46■□□□□ 0.87
PAAF1Q9BRP4 C21orf91-202ENST00000400558 1090 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
PAAF1Q9BRP4 AC104596.1-202ENST00000507486 759 ntTSL 3 BASIC20.46■□□□□ 0.87
PAAF1Q9BRP4 C12orf76-204ENST00000547573 607 ntTSL 3 BASIC20.46■□□□□ 0.87
PAAF1Q9BRP4 NT5C-210ENST00000582160 860 ntTSL 2 BASIC20.46■□□□□ 0.87
PAAF1Q9BRP4 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
PAAF1Q9BRP4 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC20.46■□□□□ 0.87
PAAF1Q9BRP4 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
PAAF1Q9BRP4 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC20.46■□□□□ 0.87
PAAF1Q9BRP4 PPP1R7-207ENST00000407025 1592 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
PAAF1Q9BRP4 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
PAAF1Q9BRP4 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC20.46■□□□□ 0.87
PAAF1Q9BRP4 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC20.45■□□□□ 0.87
PAAF1Q9BRP4 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
PAAF1Q9BRP4 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
PAAF1Q9BRP4 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
PAAF1Q9BRP4 CADPS-203ENST00000383710 5471 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
PAAF1Q9BRP4 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
PAAF1Q9BRP4 ANKRD20A18P-201ENST00000359341 492 ntBASIC20.45■□□□□ 0.86
PAAF1Q9BRP4 TMA7-201ENST00000438607 561 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
PAAF1Q9BRP4 RBPMS-AS1-202ENST00000519753 1031 ntTSL 5 BASIC20.45■□□□□ 0.86
PAAF1Q9BRP4 DCTN5-208ENST00000568589 772 ntTSL 2 BASIC20.45■□□□□ 0.86
PAAF1Q9BRP4 TMEM151B-202ENST00000451188 4895 ntAPPRIS P2 TSL 5 BASIC20.45■□□□□ 0.86
PAAF1Q9BRP4 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC20.45■□□□□ 0.86
PAAF1Q9BRP4 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC20.45■□□□□ 0.86
PAAF1Q9BRP4 OR13J1-201ENST00000377981 1339 ntAPPRIS P1 BASIC20.45■□□□□ 0.86
PAAF1Q9BRP4 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
PAAF1Q9BRP4 VLDLR-AS1-205ENST00000599229 1346 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
PAAF1Q9BRP4 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
PAAF1Q9BRP4 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC20.45■□□□□ 0.86
PAAF1Q9BRP4 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
PAAF1Q9BRP4 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC20.45■□□□□ 0.86
PAAF1Q9BRP4 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC20.45■□□□□ 0.86
PAAF1Q9BRP4 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
PAAF1Q9BRP4 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
PAAF1Q9BRP4 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
PAAF1Q9BRP4 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC20.44■□□□□ 0.86
PAAF1Q9BRP4 KHDC1-201ENST00000257765 1134 ntAPPRIS P3 TSL 1 (best) BASIC20.44■□□□□ 0.86
PAAF1Q9BRP4 ISCU-202ENST00000392807 1069 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
PAAF1Q9BRP4 PLCB1-204ENST00000404098 1260 ntTSL 3 BASIC20.44■□□□□ 0.86
PAAF1Q9BRP4 AL031133.1-201ENST00000406807 723 ntBASIC20.44■□□□□ 0.86
PAAF1Q9BRP4 ISCU-203ENST00000431221 799 ntTSL 2 BASIC20.44■□□□□ 0.86
PAAF1Q9BRP4 SAPCD2P2-201ENST00000431719 1174 ntBASIC20.44■□□□□ 0.86
PAAF1Q9BRP4 C17orf62-221ENST00000581196 668 ntTSL 4 BASIC20.44■□□□□ 0.86
PAAF1Q9BRP4 KHDC1-207ENST00000610435 1101 ntAPPRIS P3 TSL 5 BASIC20.44■□□□□ 0.86
PAAF1Q9BRP4 OBP2B-205ENST00000618116 961 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
PAAF1Q9BRP4 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC20.44■□□□□ 0.86
PAAF1Q9BRP4 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
PAAF1Q9BRP4 KRT18-207ENST00000550600 1696 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
PAAF1Q9BRP4 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC20.44■□□□□ 0.86
PAAF1Q9BRP4 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC20.44■□□□□ 0.86
PAAF1Q9BRP4 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC20.44■□□□□ 0.86
PAAF1Q9BRP4 OTOP2-201ENST00000331427 2147 ntAPPRIS P1 TSL 5 BASIC20.44■□□□□ 0.86
PAAF1Q9BRP4 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
PAAF1Q9BRP4 AL158211.5-201ENST00000623583 2518 ntBASIC20.44■□□□□ 0.86
PAAF1Q9BRP4 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC20.43■□□□□ 0.86
PAAF1Q9BRP4 CD151-201ENST00000322008 1548 ntAPPRIS P2 TSL 1 (best) BASIC20.43■□□□□ 0.86
PAAF1Q9BRP4 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
PAAF1Q9BRP4 MFSD10-205ENST00000507555 1573 ntTSL 5 BASIC20.43■□□□□ 0.86
PAAF1Q9BRP4 AFG3L1P-217ENST00000557444 2447 ntBASIC20.43■□□□□ 0.86
PAAF1Q9BRP4 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC20.43■□□□□ 0.86
PAAF1Q9BRP4 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
PAAF1Q9BRP4 GGCT-202ENST00000275428 1173 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
PAAF1Q9BRP4 COPE-203ENST00000351079 907 ntTSL 2 BASIC20.43■□□□□ 0.86
PAAF1Q9BRP4 UBE2C-204ENST00000356455 850 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
PAAF1Q9BRP4 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
PAAF1Q9BRP4 SSSCA1-206ENST00000531405 879 ntTSL 2 BASIC20.43■□□□□ 0.86
PAAF1Q9BRP4 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC20.43■□□□□ 0.86
PAAF1Q9BRP4 ETFA-216ENST00000560726 942 ntTSL 3 BASIC20.43■□□□□ 0.86
PAAF1Q9BRP4 CMTM3-210ENST00000565666 769 ntTSL 3 BASIC20.43■□□□□ 0.86
PAAF1Q9BRP4 BVES-AS1-203ENST00000580511 853 ntTSL 5 BASIC20.43■□□□□ 0.86
PAAF1Q9BRP4 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC20.43■□□□□ 0.86
PAAF1Q9BRP4 NDUFB9-206ENST00000522532 1319 ntTSL 2 BASIC20.43■□□□□ 0.86
PAAF1Q9BRP4 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC20.43■□□□□ 0.86
PAAF1Q9BRP4 MED25-212ENST00000618715 1467 ntTSL 5 BASIC20.43■□□□□ 0.86
PAAF1Q9BRP4 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC20.43■□□□□ 0.86
PAAF1Q9BRP4 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
PAAF1Q9BRP4 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
PAAF1Q9BRP4 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC20.43■□□□□ 0.86
PAAF1Q9BRP4 MAF-202ENST00000393350 6384 ntAPPRIS ALT2 BASIC20.42■□□□□ 0.86
PAAF1Q9BRP4 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC20.42■□□□□ 0.86
PAAF1Q9BRP4 Z82202.1-201ENST00000623446 1880 ntBASIC20.42■□□□□ 0.86
PAAF1Q9BRP4 AZU1-201ENST00000233997 908 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
PAAF1Q9BRP4 PBXIP1-201ENST00000368460 1175 ntAPPRIS ALT2 TSL 3 BASIC20.42■□□□□ 0.86
PAAF1Q9BRP4 TSPY21P-201ENST00000433481 731 ntBASIC20.42■□□□□ 0.86
PAAF1Q9BRP4 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC20.42■□□□□ 0.86
PAAF1Q9BRP4 AC009947.2-201ENST00000444014 672 ntBASIC20.42■□□□□ 0.86
PAAF1Q9BRP4 AL359075.1-203ENST00000462729 1002 ntBASIC20.42■□□□□ 0.86
PAAF1Q9BRP4 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC20.42■□□□□ 0.86
PAAF1Q9BRP4 REEP1-207ENST00000535845 1196 ntTSL 2 BASIC20.42■□□□□ 0.86
PAAF1Q9BRP4 AL512604.3-201ENST00000569583 964 ntBASIC20.42■□□□□ 0.86
PAAF1Q9BRP4 EEF2KMT-206ENST00000587133 873 ntAPPRIS ALT2 TSL 3 BASIC20.42■□□□□ 0.86
PAAF1Q9BRP4 JOSD2-204ENST00000598418 996 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
PAAF1Q9BRP4 C10orf142-201ENST00000619243 1110 ntAPPRIS P2 TSL 2 BASIC20.42■□□□□ 0.86
PAAF1Q9BRP4 AL358472.4-201ENST00000633140 710 ntBASIC20.42■□□□□ 0.86
PAAF1Q9BRP4 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC20.42■□□□□ 0.86
PAAF1Q9BRP4 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
PAAF1Q9BRP4 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
PAAF1Q9BRP4 GAS2L1P1-201ENST00000420145 1480 ntBASIC20.42■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 30 ms