Protein–RNA interactions for Protein: Q99727

TIMP4, Metalloproteinase inhibitor 4, humanhuman

Predictions only

Length 224 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TIMP4Q99727 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC17.58■□□□□ 0.4
TIMP4Q99727 FUZ-201ENST00000313777 1675 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
TIMP4Q99727 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
TIMP4Q99727 DUSP15-209ENST00000486996 1651 ntTSL 2 BASIC17.58■□□□□ 0.4
TIMP4Q99727 P2RY6-210ENST00000542092 1674 ntAPPRIS P1 TSL 2 BASIC17.58■□□□□ 0.4
TIMP4Q99727 WWOX-202ENST00000402655 1594 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
TIMP4Q99727 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
TIMP4Q99727 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
TIMP4Q99727 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
TIMP4Q99727 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
TIMP4Q99727 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC17.57■□□□□ 0.4
TIMP4Q99727 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
TIMP4Q99727 ABCB9-202ENST00000344275 2394 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
TIMP4Q99727 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC17.57■□□□□ 0.4
TIMP4Q99727 MMP23A-201ENST00000234610 1017 ntBASIC17.57■□□□□ 0.4
TIMP4Q99727 KIAA1522-201ENST00000294521 878 ntAPPRIS ALT2 TSL 2 BASIC17.57■□□□□ 0.4
TIMP4Q99727 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
TIMP4Q99727 AC108025.1-201ENST00000453678 1058 ntTSL 5 BASIC17.57■□□□□ 0.4
TIMP4Q99727 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
TIMP4Q99727 ANK1-211ENST00000522231 1060 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
TIMP4Q99727 ANK1-212ENST00000522543 1160 ntTSL 2 BASIC17.57■□□□□ 0.4
TIMP4Q99727 DEUP1-206ENST00000530273 410 ntTSL 3 BASIC17.57■□□□□ 0.4
TIMP4Q99727 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC17.57■□□□□ 0.4
TIMP4Q99727 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
TIMP4Q99727 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC17.57■□□□□ 0.4
TIMP4Q99727 AC133561.5-201ENST00000635547 218 ntBASIC17.57■□□□□ 0.4
TIMP4Q99727 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
TIMP4Q99727 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
TIMP4Q99727 ST3GAL4-205ENST00000449406 1669 ntTSL 5 BASIC17.57■□□□□ 0.4
TIMP4Q99727 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
TIMP4Q99727 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC17.57■□□□□ 0.4
TIMP4Q99727 SLC22A17-211ENST00000637426 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
TIMP4Q99727 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
TIMP4Q99727 EDN3-204ENST00000371028 2397 ntAPPRIS P4 TSL 5 BASIC17.57■□□□□ 0.4
TIMP4Q99727 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC17.57■□□□□ 0.4
TIMP4Q99727 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
TIMP4Q99727 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
TIMP4Q99727 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC17.56■□□□□ 0.4
TIMP4Q99727 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC17.56■□□□□ 0.4
TIMP4Q99727 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
TIMP4Q99727 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC17.56■□□□□ 0.4
TIMP4Q99727 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
TIMP4Q99727 DUT-201ENST00000331200 2147 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
TIMP4Q99727 ALDOA-212ENST00000564546 2104 ntAPPRIS P2 TSL 1 (best) BASIC17.56■□□□□ 0.4
TIMP4Q99727 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
TIMP4Q99727 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC17.56■□□□□ 0.4
TIMP4Q99727 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
TIMP4Q99727 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC17.56■□□□□ 0.4
TIMP4Q99727 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC17.56■□□□□ 0.4
TIMP4Q99727 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
TIMP4Q99727 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC17.56■□□□□ 0.4
TIMP4Q99727 ATG4B-226ENST00000625810 370 ntTSL 4 BASIC17.56■□□□□ 0.4
TIMP4Q99727 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
TIMP4Q99727 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC17.56■□□□□ 0.4
TIMP4Q99727 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC17.56■□□□□ 0.4
TIMP4Q99727 AC079598.2-202ENST00000546624 1451 ntBASIC17.56■□□□□ 0.4
TIMP4Q99727 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC17.55■□□□□ 0.4
TIMP4Q99727 KRT18-207ENST00000550600 1696 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
TIMP4Q99727 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
TIMP4Q99727 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC17.55■□□□□ 0.4
TIMP4Q99727 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
TIMP4Q99727 KRAS-201ENST00000256078 1119 ntAPPRIS P4 TSL 1 (best) BASIC17.55■□□□□ 0.4
TIMP4Q99727 PHYHD1-207ENST00000421063 1182 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
TIMP4Q99727 MUC1-211ENST00000438413 927 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
TIMP4Q99727 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
TIMP4Q99727 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC17.55■□□□□ 0.4
TIMP4Q99727 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
TIMP4Q99727 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
TIMP4Q99727 AC131212.4-201ENST00000623606 975 ntBASIC17.55■□□□□ 0.4
TIMP4Q99727 ABBA01031674.1-201ENST00000635145 728 ntBASIC17.55■□□□□ 0.4
TIMP4Q99727 SNAPC2-201ENST00000221573 1542 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
TIMP4Q99727 ADPGK-201ENST00000311669 2557 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
TIMP4Q99727 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
TIMP4Q99727 P2RX5-202ENST00000345901 2031 ntTSL 5 BASIC17.55■□□□□ 0.4
TIMP4Q99727 LINC01465-201ENST00000408887 1940 ntBASIC17.55■□□□□ 0.4
TIMP4Q99727 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC17.54■□□□□ 0.4
TIMP4Q99727 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
TIMP4Q99727 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
TIMP4Q99727 HCCS-201ENST00000321143 2277 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
TIMP4Q99727 ZNF326-202ENST00000361911 1538 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
TIMP4Q99727 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
TIMP4Q99727 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
TIMP4Q99727 AC004980.1-204ENST00000429707 299 ntBASIC17.54■□□□□ 0.4
TIMP4Q99727 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC17.54■□□□□ 0.4
TIMP4Q99727 AQP4-AS1-204ENST00000582605 525 ntTSL 4 BASIC17.54■□□□□ 0.4
TIMP4Q99727 KLHL26-205ENST00000599006 989 ntTSL 5 BASIC17.54■□□□□ 0.4
TIMP4Q99727 AP000525.1-201ENST00000608286 694 ntBASIC17.54■□□□□ 0.4
TIMP4Q99727 RASD1-201ENST00000225688 1746 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
TIMP4Q99727 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
TIMP4Q99727 FSCN1P1-201ENST00000568912 1481 ntBASIC17.54■□□□□ 0.4
TIMP4Q99727 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC17.54■□□□□ 0.4
TIMP4Q99727 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
TIMP4Q99727 GCGR-202ENST00000570996 1872 ntAPPRIS ALT2 TSL 2 BASIC17.54■□□□□ 0.4
TIMP4Q99727 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
TIMP4Q99727 KRT8P8-201ENST00000434750 1448 ntBASIC17.54■□□□□ 0.4
TIMP4Q99727 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
TIMP4Q99727 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC17.54■□□□□ 0.4
TIMP4Q99727 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
TIMP4Q99727 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
TIMP4Q99727 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC17.53■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 63.8 ms