Protein–RNA interactions for Protein: Q96M19

LINC00477, Putative transmembrane protein encoded by LINC00477, humanhuman

Predictions only

Length 166 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00477Q96M19 OSR2-202ENST00000435298 1736 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
LINC00477Q96M19 NFKBIZ-201ENST00000326151 2058 ntTSL 2 BASIC14.35□□□□□ -0.11
LINC00477Q96M19 FAM198A-202ENST00000430121 3121 ntAPPRIS P2 TSL 5 BASIC14.35□□□□□ -0.11
LINC00477Q96M19 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC14.35□□□□□ -0.11
LINC00477Q96M19 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC14.35□□□□□ -0.11
LINC00477Q96M19 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
LINC00477Q96M19 USP39-202ENST00000409025 1946 ntTSL 5 BASIC14.35□□□□□ -0.11
LINC00477Q96M19 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
LINC00477Q96M19 ZNF286A-204ENST00000464847 5616 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
LINC00477Q96M19 OTOP2-201ENST00000331427 2147 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
LINC00477Q96M19 SYT15-202ENST00000374323 6428 ntTSL 2 BASIC14.35□□□□□ -0.11
LINC00477Q96M19 L2HGDH-203ENST00000421284 1958 ntAPPRIS P1 TSL 2 BASIC14.35□□□□□ -0.11
LINC00477Q96M19 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC14.35□□□□□ -0.11
LINC00477Q96M19 ADCY3-201ENST00000260600 5050 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
LINC00477Q96M19 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
LINC00477Q96M19 FIP1L1-203ENST00000358575 2180 ntAPPRIS P4 TSL 2 BASIC14.35□□□□□ -0.11
LINC00477Q96M19 RPS14-201ENST00000312037 711 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
LINC00477Q96M19 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC14.35□□□□□ -0.11
LINC00477Q96M19 CUEDC2-201ENST00000369937 1191 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
LINC00477Q96M19 HAGLROS-201ENST00000426615 1121 ntTSL 2 BASIC14.35□□□□□ -0.11
LINC00477Q96M19 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC14.35□□□□□ -0.11
LINC00477Q96M19 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC14.35□□□□□ -0.11
LINC00477Q96M19 PLEKHB1-216ENST00000543085 632 ntTSL 3 BASIC14.35□□□□□ -0.11
LINC00477Q96M19 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC14.35□□□□□ -0.11
LINC00477Q96M19 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
LINC00477Q96M19 MCF2L-208ENST00000397030 6580 ntTSL 2 BASIC14.35□□□□□ -0.11
LINC00477Q96M19 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC14.35□□□□□ -0.11
LINC00477Q96M19 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC14.35□□□□□ -0.11
LINC00477Q96M19 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
LINC00477Q96M19 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
LINC00477Q96M19 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC14.35□□□□□ -0.11
LINC00477Q96M19 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC14.35□□□□□ -0.11
LINC00477Q96M19 FAM189B-204ENST00000368368 2609 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
LINC00477Q96M19 AL049812.1-201ENST00000432563 2267 ntBASIC14.35□□□□□ -0.11
LINC00477Q96M19 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
LINC00477Q96M19 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
LINC00477Q96M19 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC14.35□□□□□ -0.11
LINC00477Q96M19 IL15-208ENST00000529613 1355 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
LINC00477Q96M19 MGLL-204ENST00000434178 4941 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
LINC00477Q96M19 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
LINC00477Q96M19 SLC12A4-201ENST00000316341 4765 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
LINC00477Q96M19 SNTB2-201ENST00000336278 9789 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
LINC00477Q96M19 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC14.34□□□□□ -0.11
LINC00477Q96M19 CCNO-201ENST00000282572 1433 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
LINC00477Q96M19 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
LINC00477Q96M19 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
LINC00477Q96M19 CDC42EP3-201ENST00000295324 5700 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
LINC00477Q96M19 COL27A1-201ENST00000356083 7790 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
LINC00477Q96M19 UTP18-201ENST00000225298 1894 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
LINC00477Q96M19 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
LINC00477Q96M19 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC14.34□□□□□ -0.11
LINC00477Q96M19 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
LINC00477Q96M19 PSPN-201ENST00000245810 471 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
LINC00477Q96M19 TMPO-201ENST00000261210 820 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
LINC00477Q96M19 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC14.34□□□□□ -0.11
LINC00477Q96M19 MRPS26-201ENST00000380325 1127 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
LINC00477Q96M19 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
LINC00477Q96M19 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC14.34□□□□□ -0.11
LINC00477Q96M19 AL807752.2-201ENST00000435463 301 ntTSL 3 BASIC14.34□□□□□ -0.11
LINC00477Q96M19 C17orf107-202ENST00000521575 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
LINC00477Q96M19 SEC23A-AS1-201ENST00000557350 500 ntTSL 3 BASIC14.34□□□□□ -0.11
LINC00477Q96M19 ANAPC11-223ENST00000612413 964 ntTSL 3 BASIC14.34□□□□□ -0.11
LINC00477Q96M19 PHC1-212ENST00000543824 4292 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
LINC00477Q96M19 VPS37A-201ENST00000324849 4906 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
LINC00477Q96M19 TBX18-202ENST00000369663 6245 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
LINC00477Q96M19 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
LINC00477Q96M19 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
LINC00477Q96M19 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
LINC00477Q96M19 TPST2-201ENST00000338754 5697 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
LINC00477Q96M19 IL10RB-201ENST00000290200 1963 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
LINC00477Q96M19 OR6D1P-202ENST00000641007 5290 ntBASIC14.34□□□□□ -0.11
LINC00477Q96M19 SLC27A3-204ENST00000368661 2410 ntAPPRIS P2 TSL 1 (best) BASIC14.34□□□□□ -0.11
LINC00477Q96M19 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC14.34□□□□□ -0.11
LINC00477Q96M19 C19orf84-202ENST00000574814 1318 ntAPPRIS P2 TSL 1 (best) BASIC14.34□□□□□ -0.11
LINC00477Q96M19 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
LINC00477Q96M19 NFATC4-220ENST00000555393 2235 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
LINC00477Q96M19 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
LINC00477Q96M19 KLHL31-201ENST00000370905 5743 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
LINC00477Q96M19 HMGXB3-206ENST00000613459 5567 ntAPPRIS ALT2 TSL 5 BASIC14.33□□□□□ -0.11
LINC00477Q96M19 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC14.33□□□□□ -0.11
LINC00477Q96M19 FGFR1-206ENST00000397091 5702 ntAPPRIS ALT1 TSL 1 (best) BASIC14.33□□□□□ -0.11
LINC00477Q96M19 RAX2-201ENST00000555633 2414 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
LINC00477Q96M19 RHBDL1-202ENST00000352681 1463 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
LINC00477Q96M19 AGER-207ENST00000375076 1492 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
LINC00477Q96M19 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
LINC00477Q96M19 FEM1AP3-201ENST00000403722 1741 ntBASIC14.33□□□□□ -0.12
LINC00477Q96M19 AGAP4-201ENST00000311652 2715 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
LINC00477Q96M19 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
LINC00477Q96M19 Z98044.1-201ENST00000632503 1764 ntBASIC14.33□□□□□ -0.12
LINC00477Q96M19 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
LINC00477Q96M19 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC14.33□□□□□ -0.12
LINC00477Q96M19 HAGH-201ENST00000397353 1257 ntAPPRIS ALT1 TSL 5 BASIC14.33□□□□□ -0.12
LINC00477Q96M19 AKAIN1-201ENST00000434239 575 ntAPPRIS P1 TSL 2 BASIC14.33□□□□□ -0.12
LINC00477Q96M19 AC026427.1-201ENST00000508993 555 ntTSL 3 BASIC14.33□□□□□ -0.12
LINC00477Q96M19 ABCC3-217ENST00000515707 656 ntTSL 3 BASIC14.33□□□□□ -0.12
LINC00477Q96M19 AC069185.1-201ENST00000531395 811 ntTSL 3 BASIC14.33□□□□□ -0.12
LINC00477Q96M19 AL138781.1-201ENST00000566567 1274 ntBASIC14.33□□□□□ -0.12
LINC00477Q96M19 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC14.33□□□□□ -0.12
LINC00477Q96M19 WT1-AS_3.1-201ENST00000613262 234 ntBASIC14.33□□□□□ -0.12
LINC00477Q96M19 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC14.33□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 36.7 ms